Wall clock time and date at job start Tue Mar 31 2020 23:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46847 * 2 1 4 4 O 1.42898 * 109.47197 * 119.99719 * 2 1 3 5 5 C 1.35668 * 117.00180 * 90.00300 * 4 2 1 6 6 C 1.38918 * 119.69092 * 180.02562 * 5 4 2 7 7 C 1.38373 * 119.11813 * 179.97438 * 6 5 4 8 8 C 1.38827 * 118.48570 * 0.02562 * 7 6 5 9 9 S 1.76200 * 120.35987 * 179.97438 * 8 7 6 10 10 O 1.42106 * 106.39891 * 336.45466 * 9 8 7 11 11 O 1.42101 * 106.40092 * 203.53634 * 9 8 7 12 12 N 1.65596 * 107.21982 * 89.99254 * 9 8 7 13 13 C 1.46506 * 119.99779 * 65.31700 * 12 9 8 14 14 C 1.52998 * 109.47231 * 165.49663 * 13 12 9 15 15 C 1.50708 * 115.55017 * 56.73306 * 14 13 12 16 16 H 1.08000 * 119.99687 * 265.78617 * 15 14 13 17 17 C 1.37870 * 119.99918 * 85.78407 * 15 14 13 18 18 N 1.31515 * 119.99863 * 184.14591 * 17 15 14 19 19 Si 1.86803 * 120.00348 * 4.14654 * 17 15 14 20 20 H 1.48498 * 109.47081 * 93.88335 * 19 17 15 21 21 H 1.48497 * 109.47138 * 213.88629 * 19 17 15 22 22 H 1.48504 * 109.46943 * 333.88333 * 19 17 15 23 23 C 1.53005 * 117.49793 * 271.06358 * 14 13 12 24 24 C 1.52998 * 117.50115 * 202.40238 * 14 13 12 25 25 C 1.38052 * 119.28675 * 0.24909 * 8 7 6 26 26 N 1.31965 * 120.83169 * 359.45227 * 25 8 7 27 27 H 1.08998 * 109.47584 * 299.99752 * 1 2 3 28 28 H 1.08996 * 109.47061 * 60.00783 * 1 2 3 29 29 H 1.09003 * 109.46393 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47584 * 240.00248 * 2 1 3 31 31 H 1.08994 * 109.46838 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46791 * 299.99904 * 3 2 1 33 33 H 1.08998 * 109.46826 * 59.99784 * 3 2 1 34 34 H 1.08005 * 120.44158 * 359.97438 * 6 5 4 35 35 H 1.08001 * 120.76394 * 180.02562 * 7 6 5 36 36 H 0.96997 * 120.00585 * 245.31258 * 12 9 8 37 37 H 1.09009 * 109.46866 * 285.49588 * 13 12 9 38 38 H 1.08997 * 109.47165 * 45.49452 * 13 12 9 39 39 H 0.96996 * 119.99997 * 179.97438 * 18 17 15 40 40 H 1.08992 * 117.49459 * 0.02562 * 23 14 13 41 41 H 1.09004 * 117.49654 * 145.01922 * 23 14 13 42 42 H 1.08993 * 117.50078 * 214.97919 * 24 14 13 43 43 H 1.09006 * 117.49741 * 359.97438 * 24 14 13 44 44 H 1.07998 * 119.58443 * 179.73353 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2118 -2.0108 1.0654 6 6 2.6738 -2.7214 2.1660 7 6 2.8787 -4.0849 2.0495 8 6 2.6133 -4.6925 0.8298 9 16 2.8575 -6.4256 0.6264 10 8 3.8049 -6.8156 1.6111 11 8 3.0480 -6.6434 -0.7649 12 7 1.4340 -7.1715 1.0259 13 6 0.2371 -6.9503 0.2104 14 6 -0.8176 -8.0031 0.5566 15 6 -1.2220 -8.0656 2.0071 16 1 -0.7355 -8.7623 2.6737 17 6 -2.2128 -7.2334 2.4830 18 7 -2.5093 -7.2298 3.7643 19 14 -3.1341 -6.1109 1.3080 20 1 -4.3770 -6.7840 0.8525 21 1 -3.4826 -4.8457 2.0029 22 1 -2.2752 -5.8107 0.1344 23 6 -0.7869 -9.3178 -0.2255 24 6 -1.8947 -8.2951 -0.4901 25 6 2.1614 -3.9233 -0.2237 26 7 1.9701 -2.6255 -0.0804 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 2.8705 -2.2163 3.1002 35 1 3.2369 -4.6634 2.8882 36 1 1.3925 -7.7548 1.7997 37 1 -0.1617 -5.9562 0.4126 38 1 0.4969 -7.0298 -0.8452 39 1 -3.2061 -6.6440 4.0992 40 1 -0.0150 -9.4328 -0.9863 41 1 -1.0594 -10.2279 0.3090 42 1 -2.8955 -8.5327 -0.1297 43 1 -1.8520 -7.7367 -1.4253 44 1 1.9575 -4.3903 -1.1760 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601408290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:38 Heat of formation + Delta-G solvation = -76.483825 kcal Electronic energy + Delta-G solvation = -28023.311029 eV Core-core repulsion = 24068.118865 eV Total energy + Delta-G solvation = -3955.192164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.90347 -39.46414 -39.06388 -38.28930 -36.95768 -34.94025 -34.41627 -34.17757 -33.80924 -31.56869 -28.24610 -28.09324 -26.67776 -25.39393 -24.98813 -23.26023 -22.31841 -21.10802 -20.48462 -19.78430 -18.88829 -18.59111 -18.12817 -18.06852 -17.02613 -16.88652 -16.72692 -15.96140 -15.81220 -15.58712 -15.27034 -15.09055 -14.81867 -14.73840 -14.44438 -14.30298 -14.26240 -14.11630 -13.41191 -13.29715 -13.26284 -13.20520 -13.13990 -13.00715 -12.95460 -12.75830 -12.38020 -12.08382 -12.04204 -11.91554 -11.88545 -11.39782 -11.27883 -11.03346 -10.89727 -10.70786 -10.33767 -10.10025 -10.00535 -8.25935 -6.32208 -0.67666 -0.39920 -0.01660 1.35488 1.40765 1.50170 1.76635 1.99294 2.35980 2.38882 2.74678 3.00113 3.09350 3.19472 3.31090 3.71236 3.78070 3.86281 3.93445 3.96089 4.04586 4.18849 4.38194 4.40660 4.45973 4.51151 4.52508 4.63217 4.64195 4.67259 4.75641 4.78589 4.83325 4.93802 5.08613 5.12822 5.18477 5.19553 5.23434 5.50565 5.55016 5.73987 5.97835 6.17517 6.35872 6.44714 6.77370 7.38160 8.88552 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010222 B = 0.004422 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.484487 B = 6329.757968 C = 7815.268719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.069 3.931 3 C -0.144 4.144 4 O -0.302 6.302 5 C 0.358 3.642 6 C -0.213 4.213 7 C 0.052 3.948 8 C -0.776 4.776 9 S 2.726 3.274 10 O -0.983 6.983 11 O -0.975 6.975 12 N -1.096 6.096 13 C 0.153 3.847 14 C -0.033 4.033 15 C -0.477 4.477 16 H 0.042 0.958 17 C 0.028 3.972 18 N -0.945 5.945 19 Si 0.923 3.077 20 H -0.275 1.275 21 H -0.308 1.308 22 H -0.221 1.221 23 C -0.163 4.163 24 C -0.192 4.192 25 C 0.236 3.764 26 N -0.559 5.559 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.174 0.826 35 H 0.174 0.826 36 H 0.424 0.576 37 H 0.051 0.949 38 H 0.087 0.913 39 H 0.262 0.738 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.106 0.894 44 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.911 14.201 -9.622 19.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.013 3.987 3 C -0.201 4.201 4 O -0.208 6.208 5 C 0.179 3.821 6 C -0.234 4.234 7 C 0.026 3.974 8 C -0.866 4.866 9 S 2.815 3.185 10 O -0.973 6.973 11 O -0.965 6.965 12 N -0.858 5.858 13 C 0.027 3.973 14 C -0.036 4.036 15 C -0.515 4.515 16 H 0.060 0.940 17 C -0.170 4.170 18 N -0.584 5.584 19 Si 0.748 3.252 20 H -0.201 1.201 21 H -0.236 1.236 22 H -0.144 1.144 23 C -0.200 4.200 24 C -0.230 4.230 25 C 0.077 3.923 26 N -0.284 5.284 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.191 0.809 35 H 0.191 0.809 36 H 0.261 0.739 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.071 0.929 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.124 0.876 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 9.307 14.741 -10.396 20.297 hybrid contribution -1.130 0.190 1.325 1.751 sum 8.177 14.931 -9.071 19.290 Atomic orbital electron populations 1.22234 0.94289 1.02067 1.03979 1.22738 0.95003 0.94094 0.86817 1.21919 1.02011 0.91823 1.04342 1.86338 1.78911 1.15230 1.40326 1.20377 0.86612 0.85195 0.89873 1.21448 1.07490 0.94318 1.00165 1.21456 0.86350 0.94161 0.95394 1.31746 1.23164 1.28163 1.03482 1.00774 0.71956 0.72850 0.72946 1.93539 1.59810 1.82251 1.61731 1.93535 1.85103 1.84898 1.32959 1.55145 1.26111 1.61801 1.42697 1.20992 0.84526 0.98313 0.93508 1.19436 0.96714 0.95637 0.91777 1.20361 1.18886 1.19899 0.92324 0.93952 1.25693 0.97630 0.97876 0.95823 1.70037 1.32722 1.40588 1.15101 0.86141 0.80211 0.77740 0.81074 1.20122 1.23555 1.14366 1.22929 1.00874 0.93483 1.02721 1.23069 0.94594 1.04950 1.00417 1.22558 0.84541 0.87529 0.97709 1.67409 1.23360 1.12555 1.25048 0.91671 0.88651 0.94119 0.89538 0.91699 0.88157 0.91266 0.80873 0.80908 0.73931 0.93055 0.89520 0.92859 0.87744 0.90279 0.90690 0.87577 0.79096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.53 71.98 0.69 -2.44 16 2 C 0.07 1.32 3.11 30.60 0.10 1.41 16 3 C -0.14 -1.85 9.56 71.98 0.69 -1.17 16 4 O -0.30 -7.25 9.76 -89.84 -0.88 -8.12 16 5 C 0.36 9.55 7.45 84.79 0.63 10.18 16 6 C -0.21 -5.24 10.04 22.46 0.23 -5.01 16 7 C 0.05 1.35 9.64 22.44 0.22 1.57 16 8 C -0.78 -21.72 5.97 22.37 0.13 -21.58 16 9 S 2.73 82.50 5.75 -56.49 -0.32 82.17 16 10 O -0.98 -33.48 17.36 -128.00 -2.22 -35.70 16 11 O -0.97 -31.54 16.76 -128.00 -2.15 -33.68 16 12 N -1.10 -36.52 5.92 -187.48 -1.11 -37.63 16 13 C 0.15 5.34 5.84 86.38 0.50 5.84 16 14 C -0.03 -1.34 0.98 -52.92 -0.05 -1.40 16 15 C -0.48 -24.37 8.67 25.60 0.22 -24.15 16 16 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 17 C 0.03 1.50 5.47 84.65 0.46 1.96 16 18 N -0.94 -56.01 13.96 21.44 0.30 -55.71 16 19 Si 0.92 41.49 24.94 68.60 1.71 43.20 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.31 -14.38 7.11 99.48 0.71 -13.67 16 22 H -0.22 -8.65 5.58 99.48 0.55 -8.10 16 23 C -0.16 -5.72 9.94 30.62 0.30 -5.42 16 24 C -0.19 -6.94 7.34 30.62 0.22 -6.72 16 25 C 0.24 6.36 10.68 84.63 0.90 7.26 16 26 N -0.56 -15.35 8.65 -308.96 -2.67 -18.03 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 1.76 6.98 -2.39 -0.02 1.74 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.17 3.88 7.71 -2.91 -0.02 3.86 16 36 H 0.42 14.92 8.06 -96.75 -0.78 14.14 16 37 H 0.05 1.81 6.87 -2.38 -0.02 1.80 16 38 H 0.09 2.56 7.72 -2.39 -0.02 2.54 16 39 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 40 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 41 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 42 H 0.07 2.92 7.06 -2.39 -0.02 2.90 16 43 H 0.11 3.20 8.14 -2.38 -0.02 3.18 16 44 H 0.19 4.33 7.61 -2.91 -0.02 4.31 16 Total: -1.00 -68.33 376.82 -2.01 -70.34 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: 0.08 Total: 32.82 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 5.25 Total: -39.66 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -3.48 Total: -111.36 kcal Atomic # 8 Polarization: -72.27 SS G_CDS: -5.24 Total: -77.51 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.71 Total: 43.20 kcal Atomic # 16 Polarization: 82.50 SS G_CDS: -0.32 Total: 82.17 kcal Total: -68.33 -2.01 -70.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601408290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.140 kcal (2) G-P(sol) polarization free energy of solvation -68.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds