Wall clock time and date at job start Wed Apr 1 2020 00:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47541 * 2 1 4 4 S 1.81408 * 109.47037 * 119.99925 * 2 1 3 5 5 O 1.42098 * 110.53873 * 308.37365 * 4 2 1 6 6 O 1.42099 * 110.53957 * 171.62422 * 4 2 1 7 7 N 1.65599 * 104.45079 * 60.00071 * 4 2 1 8 8 N 1.40099 * 120.00175 * 59.99701 * 7 4 2 9 9 C 1.29740 * 119.99953 * 180.02562 * 8 7 4 10 10 C 1.47504 * 119.99948 * 179.97438 * 9 8 7 11 11 C 1.39722 * 120.12663 * 359.97438 * 10 9 8 12 12 C 1.37946 * 119.95312 * 180.02562 * 11 10 9 13 13 C 1.38298 * 120.21372 * 359.73940 * 12 11 10 14 14 C 1.38839 * 120.25992 * 0.51397 * 13 12 11 15 15 O 1.35900 * 119.97830 * 179.76179 * 14 13 12 16 16 C 1.42898 * 117.00172 * 359.72335 * 15 14 13 17 17 C 1.52997 * 109.47319 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00362 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99850 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47052 * 89.99717 * 22 20 18 24 24 H 1.48495 * 109.47307 * 209.99656 * 22 20 18 25 25 H 1.48500 * 109.47143 * 330.00164 * 22 20 18 26 26 C 1.38463 * 120.04277 * 359.48902 * 14 13 12 27 27 H 1.08999 * 109.47230 * 300.00472 * 1 2 3 28 28 H 1.09005 * 109.47254 * 60.00139 * 1 2 3 29 29 H 1.09004 * 109.47181 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47230 * 239.99528 * 2 1 3 31 31 H 1.08994 * 109.47151 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46732 * 300.00180 * 3 2 1 33 33 H 1.08999 * 109.47243 * 59.99537 * 3 2 1 34 34 H 0.96998 * 119.99545 * 240.00521 * 7 4 2 35 35 H 1.07999 * 120.00180 * 0.02562 * 9 8 7 36 36 H 1.07999 * 120.02839 * 359.97438 * 11 10 9 37 37 H 1.07999 * 119.89423 * 180.02562 * 12 11 10 38 38 H 1.08004 * 119.87350 * 180.27214 * 13 12 11 39 39 H 1.09002 * 109.47259 * 300.00149 * 16 15 14 40 40 H 1.09001 * 109.47074 * 60.00171 * 16 15 14 41 41 H 1.09002 * 109.47153 * 300.00307 * 17 16 15 42 42 H 1.08998 * 109.47533 * 59.99936 * 17 16 15 43 43 H 0.96994 * 119.99814 * 180.02562 * 21 20 18 44 44 H 1.07997 * 120.10987 * 180.23187 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8552 1.4812 5 8 1.5220 -0.3244 2.6483 6 8 3.5420 -1.0386 1.4114 7 7 1.5164 -2.3863 1.3557 8 7 1.8456 -3.1865 0.2539 9 6 1.3609 -4.3859 0.1554 10 6 1.7070 -5.2283 -1.0050 11 6 2.5562 -4.7370 -1.9998 12 6 2.8772 -5.5276 -3.0837 13 6 2.3652 -6.8082 -3.1868 14 6 1.5164 -7.3035 -2.2061 15 8 1.0127 -8.5609 -2.3157 16 6 1.3939 -9.3143 -3.4686 17 6 0.7345 -10.6939 -3.4174 18 6 1.1370 -11.4886 -4.6328 19 1 1.7975 -11.0534 -5.3682 20 6 0.6629 -12.7717 -4.8057 21 7 1.0145 -13.4655 -5.8662 22 14 -0.4779 -13.5254 -3.5327 23 1 -1.8871 -13.2224 -3.8899 24 1 -0.2807 -14.9968 -3.5007 25 1 -0.1727 -12.9558 -2.1957 26 6 1.1871 -6.5191 -1.1136 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 0.9263 -2.7290 2.0450 35 1 0.7032 -4.7673 0.9225 36 1 2.9605 -3.7386 -1.9207 37 1 3.5340 -5.1471 -3.8518 38 1 2.6236 -7.4241 -4.0356 39 1 1.0713 -8.7901 -4.3682 40 1 2.4776 -9.4304 -3.4848 41 1 1.0575 -11.2178 -2.5178 42 1 -0.3492 -10.5783 -3.4009 43 1 0.6807 -14.3680 -5.9879 44 1 0.5299 -6.9046 -0.3483 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726738156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:06 Heat of formation + Delta-G solvation = -61.941293 kcal Electronic energy + Delta-G solvation = -25794.555815 eV Core-core repulsion = 21839.994262 eV Total energy + Delta-G solvation = -3954.561553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.97324 -38.05600 -37.60872 -36.79443 -36.44974 -35.55505 -33.42772 -32.69808 -31.25369 -30.11702 -29.09139 -27.91247 -25.51365 -23.87952 -23.18438 -22.54596 -21.24180 -20.24705 -19.78451 -18.50577 -18.02571 -17.38527 -17.16955 -16.70056 -15.91763 -15.82572 -15.55110 -15.26790 -15.14205 -14.73691 -14.16065 -13.96617 -13.87543 -13.71696 -13.60783 -13.21301 -12.97419 -12.93745 -12.75290 -12.59017 -12.55278 -12.43790 -12.06098 -11.98758 -11.85619 -11.72104 -11.64499 -11.04606 -10.95372 -10.85646 -10.73097 -10.25735 -10.18124 -10.00460 -9.86967 -9.39911 -8.67660 -8.64112 -8.04058 -6.17918 -4.19285 -0.32429 0.57498 1.47472 1.85177 2.16974 3.15400 3.24761 3.32522 3.37031 3.50257 3.67137 3.82383 3.90252 4.02178 4.30963 4.34724 4.38278 4.51613 4.84293 4.86798 4.96833 4.99750 5.08435 5.13685 5.16130 5.21253 5.27563 5.36511 5.39991 5.44234 5.47945 5.71669 5.84162 5.84930 5.90782 6.29918 6.32267 6.40703 6.48609 6.69644 7.01068 7.16813 7.32373 7.56682 7.78702 8.33612 8.82542 9.42123 10.94498 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029876 B = 0.001692 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.993129 B =16542.697556 C =16875.870637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.582 4.582 3 C -0.145 4.145 4 S 2.631 3.369 5 O -0.951 6.951 6 O -0.940 6.940 7 N -0.968 5.968 8 N -0.236 5.236 9 C 0.141 3.859 10 C -0.032 4.032 11 C -0.127 4.127 12 C -0.085 4.085 13 C -0.189 4.189 14 C 0.140 3.860 15 O -0.318 6.318 16 C 0.072 3.928 17 C -0.009 4.009 18 C -0.528 4.528 19 H 0.075 0.925 20 C 0.072 3.928 21 N -0.897 5.897 22 Si 0.881 3.119 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.263 1.263 26 C -0.128 4.128 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.145 0.855 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.401 0.599 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.024 0.976 43 H 0.266 0.734 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.697 28.433 12.363 31.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.693 4.693 3 C -0.204 4.204 4 S 2.723 3.277 5 O -0.940 6.940 6 O -0.930 6.930 7 N -0.809 5.809 8 N -0.044 5.044 9 C -0.071 4.071 10 C -0.034 4.034 11 C -0.148 4.148 12 C -0.103 4.103 13 C -0.209 4.209 14 C 0.093 3.907 15 O -0.232 6.232 16 C -0.002 4.002 17 C -0.046 4.046 18 C -0.566 4.566 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.535 5.535 22 Si 0.708 3.292 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.188 1.188 26 C -0.150 4.150 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.163 0.837 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.236 0.764 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.153 0.847 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.076 0.924 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.361 29.365 12.734 32.010 hybrid contribution -1.605 -1.261 0.470 2.095 sum -1.244 28.104 13.204 31.077 Atomic orbital electron populations 1.21603 0.89795 1.03617 1.04665 1.30189 1.07280 1.09578 1.22229 1.21670 1.02107 0.91721 1.04887 1.04841 0.74497 0.72225 0.76123 1.93633 1.78527 1.77139 1.44684 1.93614 1.29069 1.83425 1.86856 1.57556 1.63715 1.31117 1.28558 1.74475 1.18117 1.06894 1.04875 1.24443 0.95353 0.90739 0.96609 1.17968 0.99480 0.92547 0.93453 1.21184 0.99000 1.00571 0.94001 1.20911 0.98570 0.93232 0.97592 1.21622 1.00878 0.97761 1.00650 1.18928 0.92495 0.85582 0.93675 1.86132 1.67843 1.22551 1.46637 1.23119 0.99689 0.92956 0.84465 1.19586 0.96511 0.89787 0.98755 1.20829 1.31069 0.98859 1.05867 0.90725 1.24937 0.95925 0.96759 0.95389 1.69889 1.44725 1.11240 1.27601 0.86756 0.81378 0.78403 0.82704 1.20066 1.21167 1.18752 1.20393 1.03516 0.92658 0.98396 0.90756 0.90137 0.91301 0.83735 0.90737 0.89618 0.90929 0.76368 0.85499 0.85153 0.85480 0.84698 0.92380 0.92343 0.95373 0.95812 0.92409 0.84715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 9.06 37.15 0.34 -0.34 16 2 C -0.58 -3.39 3.57 -26.73 -0.10 -3.49 16 3 C -0.15 -0.70 9.20 37.16 0.34 -0.36 16 4 S 2.63 22.97 5.06 -107.50 -0.54 22.42 16 5 O -0.95 -10.06 17.96 -57.54 -1.03 -11.09 16 6 O -0.94 -11.81 18.09 -57.54 -1.04 -12.85 16 7 N -0.97 -7.63 6.31 60.35 0.38 -7.25 16 8 N -0.24 -2.16 10.56 32.16 0.34 -1.82 16 9 C 0.14 1.20 10.75 -14.66 -0.16 1.05 16 10 C -0.03 -0.34 5.87 -105.07 -0.62 -0.95 16 11 C -0.13 -1.36 9.57 -39.13 -0.37 -1.73 16 12 C -0.08 -0.94 10.02 -39.67 -0.40 -1.34 16 13 C -0.19 -2.51 9.03 -39.34 -0.36 -2.87 16 14 C 0.14 2.05 6.68 -39.28 -0.26 1.79 16 15 O -0.32 -5.61 10.13 -19.43 -0.20 -5.81 16 16 C 0.07 1.37 4.68 37.16 0.17 1.54 16 17 C -0.01 -0.21 4.41 -27.89 -0.12 -0.33 16 18 C -0.53 -14.41 9.66 -34.44 -0.33 -14.74 16 19 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 20 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 21 N -0.90 -26.67 13.96 55.43 0.77 -25.90 16 22 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 26 C -0.13 -1.54 9.73 -39.00 -0.38 -1.92 16 27 H 0.07 0.34 8.11 -51.93 -0.42 -0.08 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.32 7.91 -51.93 -0.41 -0.09 16 30 H 0.14 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.40 2.25 8.75 -176.24 -1.54 0.71 16 35 H 0.13 0.72 8.02 -52.49 -0.42 0.30 16 36 H 0.13 1.23 7.55 -52.49 -0.40 0.84 16 37 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.14 1.78 6.28 -52.48 -0.33 1.45 16 39 H 0.06 1.06 7.67 -51.93 -0.40 0.66 16 40 H 0.06 1.07 7.64 -51.93 -0.40 0.68 16 41 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 42 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 43 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 387.83 15.07 5.84 5.84 Total: -1.00 -34.63 387.83 -10.11 -44.74 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -7.63 Total: -2.85 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -2.34 Total: -21.76 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 1.49 Total: -34.97 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -2.27 Total: -29.75 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Atomic # 16 Polarization: 22.97 SS G_CDS: -0.54 Total: 22.42 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.63 -10.11 -44.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726738156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.200 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds