Wall clock time and date at job start Tue Mar 31 2020 22:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47362 * 2 1 4 4 N 1.46499 * 109.47061 * 120.00343 * 2 1 3 5 5 C 1.46499 * 119.99858 * 300.00034 * 4 2 1 6 6 S 1.65601 * 120.00063 * 119.99493 * 4 2 1 7 7 O 1.42095 * 106.40509 * 336.46297 * 6 4 2 8 8 O 1.42108 * 106.40014 * 203.53661 * 6 4 2 9 9 N 1.65605 * 107.21440 * 90.00520 * 6 4 2 10 10 C 1.34771 * 120.00029 * 64.99624 * 9 6 4 11 11 O 1.21275 * 120.00380 * 0.02562 * 10 9 6 12 12 C 1.50704 * 119.99694 * 180.02562 * 10 9 6 13 13 C 1.50699 * 109.47125 * 180.02562 * 12 10 9 14 14 C 1.37640 * 120.12931 * 264.99856 * 13 12 10 15 15 C 1.38608 * 120.24877 * 179.97438 * 14 13 12 16 16 C 1.38654 * 120.50357 * 0.02562 * 15 14 13 17 17 C 1.37601 * 120.24831 * 0.02629 * 16 15 14 18 18 C 1.40696 * 120.12760 * 84.73009 * 13 12 10 19 19 C 1.41398 * 120.24431 * 359.97438 * 18 13 12 20 20 H 1.08003 * 120.00339 * 333.91158 * 19 18 13 21 21 C 1.39952 * 119.99773 * 153.90103 * 19 18 13 22 22 N 1.30816 * 119.99844 * 343.71763 * 21 19 18 23 23 Si 1.86796 * 119.99737 * 163.71668 * 21 19 18 24 24 H 1.48500 * 109.47359 * 90.00328 * 23 21 19 25 25 H 1.48502 * 109.46856 * 210.00291 * 23 21 19 26 26 H 1.48498 * 109.47103 * 330.00065 * 23 21 19 27 27 H 1.08999 * 109.47579 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47296 * 300.00301 * 1 2 3 29 29 H 1.09004 * 109.47016 * 60.00052 * 1 2 3 30 30 H 1.09005 * 109.46847 * 239.99942 * 2 1 3 31 31 H 1.09000 * 109.47323 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47452 * 299.99747 * 3 2 1 33 33 H 1.09005 * 109.47187 * 60.00150 * 3 2 1 34 34 H 1.08997 * 109.47138 * 269.99832 * 5 4 2 35 35 H 1.09004 * 109.47260 * 29.99534 * 5 4 2 36 36 H 1.09005 * 109.47493 * 149.99919 * 5 4 2 37 37 H 0.97002 * 119.99200 * 244.99861 * 9 6 4 38 38 H 1.09002 * 109.46965 * 300.00231 * 12 10 9 39 39 H 1.08999 * 109.47412 * 60.00125 * 12 10 9 40 40 H 1.08007 * 119.87242 * 0.02562 * 14 13 12 41 41 H 1.08002 * 119.74457 * 180.02562 * 15 14 13 42 42 H 1.07998 * 119.87498 * 179.97438 * 16 15 14 43 43 H 1.08001 * 120.12872 * 179.97438 * 17 16 15 44 44 H 0.97004 * 120.00045 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6644 -0.1902 2.5267 6 16 2.9703 -2.0372 1.0441 7 8 2.6903 -2.5841 -0.2371 8 8 2.8227 -2.7713 2.2519 9 7 4.5437 -1.5225 0.9993 10 6 5.0882 -0.9250 2.0776 11 8 4.4262 -0.7645 3.0810 12 6 6.5199 -0.4561 2.0365 13 6 6.8810 0.1718 3.3580 14 6 6.7848 1.5347 3.5245 15 6 7.1158 2.1148 4.7391 16 6 7.5473 1.3316 5.7988 17 6 7.6520 -0.0328 5.6546 18 6 7.3123 -0.6334 4.4281 19 6 7.4090 -2.0353 4.2706 20 1 6.7920 -2.5408 3.5424 21 6 8.3044 -2.7677 5.0582 22 7 9.2647 -2.1535 5.6999 23 14 8.1283 -4.6225 5.1931 24 1 8.9239 -5.2745 4.1221 25 1 8.6222 -5.0714 6.5197 26 1 6.6987 -4.9960 5.0448 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 2.4157 0.5272 2.8568 35 1 0.6904 0.2973 2.4843 36 1 1.6237 -1.0228 3.2291 37 1 5.0733 -1.6511 0.1968 38 1 7.1753 -1.3063 1.8474 39 1 6.6389 0.2786 1.2402 40 1 6.4494 2.1544 2.7059 41 1 7.0370 3.1850 4.8609 42 1 7.8029 1.7943 6.7405 43 1 7.9887 -0.6410 6.4812 44 1 9.8852 -2.6611 6.2461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761104360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:21 Heat of formation + Delta-G solvation = -122.072930 kcal Electronic energy + Delta-G solvation = -28755.378717 eV Core-core repulsion = 24798.209661 eV Total energy + Delta-G solvation = -3957.169056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.14441 -39.19614 -38.67641 -38.35936 -37.19353 -35.50273 -35.42957 -33.40393 -32.59058 -31.33170 -28.70259 -28.03829 -27.45029 -26.90889 -23.33689 -22.79168 -22.24994 -21.26988 -20.44045 -19.39193 -19.10418 -18.86408 -18.18877 -17.28495 -17.05670 -16.42801 -16.26823 -15.71132 -15.67410 -15.31042 -15.26817 -15.09662 -14.96099 -14.37418 -14.01657 -13.86618 -13.79896 -13.63835 -13.45876 -13.38193 -13.37389 -13.02123 -12.90592 -12.84620 -12.78092 -12.74927 -12.50913 -12.42451 -12.20641 -12.14541 -11.91931 -11.63517 -11.31004 -11.25756 -11.13988 -11.01945 -10.18473 -9.20451 -9.16107 -8.60794 -6.29921 -0.76673 0.98607 1.12207 1.23274 1.34747 1.44898 1.53070 1.64721 2.18873 2.25890 2.78031 3.11208 3.50709 3.66175 3.89604 4.07096 4.14568 4.16138 4.33196 4.38858 4.42393 4.61939 4.63407 4.69545 4.73736 4.77063 4.82415 4.83015 4.97037 5.02528 5.07190 5.13735 5.20230 5.38632 5.38885 5.41322 5.54856 5.56106 5.76768 5.85014 6.05861 6.17813 6.24856 6.42608 6.67725 6.76428 6.99052 7.12166 8.35056 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013565 B = 0.004265 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.614088 B = 6563.522103 C = 7946.634741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.127 3.873 3 C -0.160 4.160 4 N -0.988 5.988 5 C 0.094 3.906 6 S 2.778 3.222 7 O -0.980 6.980 8 O -0.996 6.996 9 N -1.055 6.055 10 C 0.538 3.462 11 O -0.509 6.509 12 C -0.071 4.071 13 C -0.193 4.193 14 C -0.082 4.082 15 C -0.239 4.239 16 C -0.115 4.115 17 C -0.193 4.193 18 C 0.098 3.902 19 C -0.487 4.487 20 H 0.069 0.931 21 C 0.041 3.959 22 N -0.822 5.822 23 Si 0.958 3.042 24 H -0.253 1.253 25 H -0.266 1.266 26 H -0.274 1.274 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.446 0.554 38 H 0.106 0.894 39 H 0.133 0.867 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.429 5.929 -13.957 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.023 3.977 3 C -0.219 4.219 4 N -0.832 5.832 5 C -0.051 4.051 6 S 2.788 3.212 7 O -0.964 6.964 8 O -0.979 6.979 9 N -0.823 5.823 10 C 0.326 3.674 11 O -0.380 6.380 12 C -0.112 4.112 13 C -0.195 4.195 14 C -0.100 4.100 15 C -0.258 4.258 16 C -0.134 4.134 17 C -0.213 4.213 18 C 0.096 3.904 19 C -0.517 4.517 20 H 0.088 0.912 21 C -0.174 4.174 22 N -0.449 5.449 23 Si 0.780 3.220 24 H -0.177 1.177 25 H -0.190 1.190 26 H -0.198 1.198 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.285 0.715 38 H 0.124 0.876 39 H 0.151 0.849 40 H 0.143 0.857 41 H 0.134 0.866 42 H 0.121 0.879 43 H 0.112 0.888 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.975 5.094 -13.090 18.458 hybrid contribution 0.675 -0.820 0.387 1.131 sum -11.300 4.274 -12.703 17.531 Atomic orbital electron populations 1.22142 0.93198 1.02456 1.03969 1.21292 0.96488 0.94494 0.85475 1.22170 1.01435 0.94543 1.03709 1.57522 1.64391 1.47846 1.13404 1.21539 1.02317 1.00180 0.81064 1.02134 0.73201 0.73633 0.72262 1.93606 1.83829 1.77037 1.41931 1.93619 1.85442 1.70071 1.48770 1.55265 1.33775 1.69117 1.24145 1.21292 0.91356 0.74116 0.80590 1.90824 1.63459 1.52771 1.30955 1.20456 0.90118 1.02921 0.97692 1.19475 1.12088 0.93336 0.94650 1.20740 0.98458 0.93776 0.97053 1.20729 1.11584 0.98694 0.94838 1.20954 1.00054 0.94014 0.98364 1.21295 1.07571 0.94333 0.98073 1.17697 0.88668 0.93282 0.90760 1.19646 1.19680 0.92815 1.19516 0.91237 1.26527 0.93075 1.04707 0.93052 1.69859 1.11475 1.39778 1.23750 0.85559 0.79205 0.77930 0.79294 1.17690 1.19014 1.19848 0.93131 0.91290 0.88984 0.88147 0.92719 0.89092 0.91947 0.92798 0.87989 0.92278 0.71505 0.87603 0.84901 0.85748 0.86588 0.87932 0.88828 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.17 71.98 0.66 -1.54 16 2 C 0.13 2.20 3.24 44.99 0.15 2.35 16 3 C -0.16 -2.22 9.19 71.98 0.66 -1.56 16 4 N -0.99 -23.92 3.13 -516.52 -1.62 -25.53 16 5 C 0.09 2.37 8.49 127.77 1.08 3.46 16 6 S 2.78 83.90 5.77 -56.49 -0.33 83.58 16 7 O -0.98 -29.51 16.70 -128.00 -2.14 -31.65 16 8 O -1.00 -40.49 15.69 -120.89 -1.90 -42.39 16 9 N -1.05 -28.27 5.75 -173.54 -1.00 -29.27 16 10 C 0.54 18.70 7.35 87.66 0.64 19.34 16 11 O -0.51 -21.81 12.98 13.31 0.17 -21.64 16 12 C -0.07 -2.39 5.18 29.10 0.15 -2.24 16 13 C -0.19 -8.56 4.43 -19.41 -0.09 -8.65 16 14 C -0.08 -3.32 9.66 22.22 0.21 -3.11 16 15 C -0.24 -10.08 10.05 22.46 0.23 -9.86 16 16 C -0.12 -5.44 10.02 22.22 0.22 -5.22 16 17 C -0.19 -10.39 8.69 22.73 0.20 -10.19 16 18 C 0.10 5.19 5.56 -21.29 -0.12 5.07 16 19 C -0.49 -26.07 8.14 23.46 0.19 -25.88 16 20 H 0.07 3.64 6.67 -2.91 -0.02 3.62 16 21 C 0.04 2.12 5.16 85.26 0.44 2.56 16 22 N -0.82 -43.38 10.95 21.83 0.24 -43.14 16 23 Si 0.96 40.11 29.59 68.60 2.03 42.14 16 24 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 25 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.88 6.66 -2.39 -0.02 0.86 16 29 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.10 1.68 6.91 -2.38 -0.02 1.66 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 0.90 7.67 -2.38 -0.02 0.88 16 34 H 0.05 1.49 7.23 -2.39 -0.02 1.47 16 35 H 0.10 1.85 6.43 -2.38 -0.02 1.83 16 36 H 0.06 1.81 7.02 -2.38 -0.02 1.79 16 37 H 0.45 7.98 8.83 -96.75 -0.85 7.13 16 38 H 0.11 3.62 7.08 -2.39 -0.02 3.60 16 39 H 0.13 3.17 8.05 -2.39 -0.02 3.15 16 40 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16 41 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 42 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 43 H 0.09 5.35 6.20 -2.91 -0.02 5.33 16 44 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 Total: -1.00 -74.04 370.02 0.28 -73.76 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 0.18 Total: 29.59 kcal Atomic # 6 Polarization: -40.10 SS G_CDS: 4.63 Total: -35.46 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -2.38 Total: -97.94 kcal Atomic # 8 Polarization: -91.81 SS G_CDS: -3.86 Total: -95.67 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Atomic # 16 Polarization: 83.90 SS G_CDS: -0.33 Total: 83.58 kcal Total: -74.04 0.28 -73.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761104360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.308 kcal (2) G-P(sol) polarization free energy of solvation -74.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds