Wall clock time and date at job start Wed Apr 1 2020 00:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.37162 * 2 1 4 4 C 1.53746 * 110.41857 * 237.62546 * 2 1 3 5 5 N 1.46542 * 105.19229 * 241.11245 * 4 2 1 6 6 C 1.34770 * 124.95951 * 180.02562 * 5 4 2 7 7 O 1.21396 * 119.99863 * 174.90466 * 6 5 4 8 8 C 1.49218 * 120.00158 * 354.90231 * 6 5 4 9 9 O 1.21404 * 120.00068 * 5.06968 * 8 6 5 10 10 N 1.34781 * 119.99532 * 185.06766 * 8 6 5 11 11 C 1.40300 * 119.99483 * 179.97438 * 10 8 6 12 12 C 1.40722 * 126.10028 * 0.03342 * 11 10 8 13 13 N 1.30878 * 108.37777 * 179.97438 * 12 11 10 14 14 N 1.40060 * 108.43298 * 359.97438 * 13 12 11 15 15 C 1.37294 * 126.05370 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00162 * 180.02562 * 15 14 13 17 17 C 1.39002 * 120.00254 * 0.03022 * 15 14 13 18 18 N 1.31286 * 120.00173 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00427 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47008 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47184 * 119.99524 * 19 17 15 22 22 H 1.48499 * 109.47590 * 239.99958 * 19 17 15 23 23 C 1.35785 * 126.09686 * 179.71024 * 11 10 8 24 24 C 1.39633 * 110.07736 * 0.02562 * 5 4 2 25 25 C 1.39693 * 129.33371 * 179.97438 * 24 5 4 26 26 C 1.37817 * 120.27798 * 179.97438 * 25 24 5 27 27 C 1.38306 * 120.23377 * 0.06143 * 26 25 24 28 28 C 1.38240 * 119.84008 * 359.96990 * 27 26 25 29 29 C 1.38168 * 120.14697 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47227 * 180.69823 * 1 2 3 31 31 H 1.08996 * 109.47486 * 300.70376 * 1 2 3 32 32 H 1.09005 * 109.47037 * 60.70621 * 1 2 3 33 33 H 1.09001 * 110.30478 * 0.04379 * 4 2 1 34 34 H 1.08999 * 110.29807 * 122.08874 * 4 2 1 35 35 H 0.97001 * 120.00227 * 0.02562 * 10 8 6 36 36 H 1.08007 * 125.81426 * 359.97438 * 12 11 10 37 37 H 0.96996 * 120.00667 * 180.02562 * 18 17 15 38 38 H 1.07993 * 126.25424 * 0.02562 * 23 11 10 39 39 H 1.08001 * 119.86070 * 0.02988 * 25 24 5 40 40 H 1.08005 * 119.88209 * 180.02562 * 26 25 24 41 41 H 1.08005 * 120.08427 * 179.97438 * 27 26 25 42 42 H 1.07997 * 119.92947 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9095 1.0218 0.0000 4 6 2.0664 -0.7715 -1.2169 5 7 2.8407 -1.8824 -0.6565 6 6 3.4899 -2.8144 -1.3818 7 8 4.1813 -3.6431 -0.8259 8 6 3.3589 -2.8279 -2.8682 9 8 2.7433 -1.9460 -3.4313 10 7 3.9240 -3.8193 -3.5854 11 6 3.8003 -3.8323 -4.9829 12 6 3.1195 -2.8800 -5.7639 13 7 3.2230 -3.2276 -7.0214 14 7 3.9709 -4.4096 -7.0941 15 6 4.2970 -5.0903 -8.2409 16 1 4.8809 -5.9970 -8.1833 17 6 3.8757 -4.6125 -9.4764 18 7 3.1655 -3.5105 -9.5466 19 14 4.3199 -5.5382 -11.0369 20 1 5.1204 -6.7396 -10.6888 21 1 3.0776 -5.9559 -11.7353 22 1 5.1152 -4.6550 -11.9271 23 6 4.3215 -4.7626 -5.8235 24 6 2.8075 -1.8341 0.7386 25 6 3.4032 -2.6894 1.6685 26 6 3.2475 -2.4642 3.0192 27 6 2.4988 -1.3899 3.4643 28 6 1.9055 -0.5391 2.5504 29 6 2.0596 -0.7600 1.1952 30 1 -0.3633 -1.0276 0.0125 31 1 -0.3634 0.5247 0.8836 32 1 -0.3633 0.5028 -0.8963 33 1 1.2403 -1.1516 -1.8179 34 1 2.7073 -0.1283 -1.8199 35 1 4.4155 -4.5241 -3.1354 36 1 2.5999 -2.0104 -5.3894 37 1 2.8711 -3.1773 -10.4087 38 1 4.9050 -5.6255 -5.5384 39 1 3.9891 -3.5303 1.3276 40 1 3.7113 -3.1294 3.7327 41 1 2.3780 -1.2159 4.5234 42 1 1.3210 0.3004 2.8964 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775530161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:57 Heat of formation + Delta-G solvation = 59.158955 kcal Electronic energy + Delta-G solvation = -28280.467239 eV Core-core repulsion = 24228.005787 eV Total energy + Delta-G solvation = -4052.461452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.56801 -40.10320 -39.18471 -37.91418 -36.80304 -34.53581 -33.63294 -33.18210 -30.42677 -30.26923 -29.94258 -28.13540 -27.01001 -25.56189 -24.38737 -23.09903 -22.21947 -21.08313 -20.90587 -19.88548 -19.50662 -17.79741 -17.58106 -16.98656 -16.53994 -15.92309 -15.84592 -15.54413 -15.28307 -14.98735 -14.65533 -14.28539 -13.99456 -13.93497 -13.68814 -13.41166 -13.26093 -13.07380 -13.00912 -12.73611 -12.41899 -12.16637 -11.82555 -11.76706 -11.62217 -11.38407 -11.33969 -11.17897 -10.97707 -10.77663 -10.55704 -10.46004 -10.31055 -9.28782 -9.19934 -9.00343 -8.93333 -8.18449 -8.00789 -6.84407 -6.64953 -4.32427 0.88637 1.18722 1.73710 2.25478 2.88495 3.01236 3.07239 3.18357 3.46902 3.57930 3.67681 3.77991 4.24086 4.25493 4.30190 4.47125 4.76221 4.83988 4.85296 4.93826 4.94136 4.96595 5.19924 5.27302 5.36993 5.46546 5.53949 5.70965 5.72682 5.82315 5.99361 6.00723 6.14726 6.23222 6.25734 6.29352 6.35830 6.68506 6.78177 6.83769 6.87642 7.03214 7.11129 7.52384 7.76060 7.98036 8.11656 8.38362 8.62713 9.25851 9.54283 10.30811 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029716 B = 0.002217 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.035218 B =12625.355575 C =13473.667114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 H 0.097 0.903 4 C 0.112 3.888 5 N -0.530 5.530 6 C 0.522 3.478 7 O -0.506 6.506 8 C 0.487 3.513 9 O -0.515 6.515 10 N -0.579 5.579 11 C -0.071 4.071 12 C -0.025 4.025 13 N -0.260 5.260 14 N -0.137 5.137 15 C -0.321 4.321 16 H 0.119 0.881 17 C 0.046 3.954 18 N -0.766 5.766 19 Si 0.936 3.064 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.273 1.273 23 C -0.077 4.077 24 C 0.146 3.854 25 C -0.131 4.131 26 C -0.096 4.096 27 C -0.143 4.143 28 C -0.079 4.079 29 C -0.127 4.127 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.409 0.591 36 H 0.178 0.822 37 H 0.276 0.724 38 H 0.150 0.850 39 H 0.139 0.861 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 4.747 20.296 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 H 0.115 0.885 4 C -0.009 4.009 5 N -0.253 5.253 6 C 0.308 3.692 7 O -0.381 6.381 8 C 0.268 3.732 9 O -0.392 6.392 10 N -0.222 5.222 11 C -0.176 4.176 12 C -0.201 4.201 13 N -0.091 5.091 14 N 0.096 4.904 15 C -0.453 4.453 16 H 0.137 0.863 17 C -0.172 4.172 18 N -0.393 5.393 19 Si 0.760 3.240 20 H -0.186 1.186 21 H -0.198 1.198 22 H -0.198 1.198 23 C -0.228 4.228 24 C 0.051 3.949 25 C -0.152 4.152 26 C -0.114 4.114 27 C -0.162 4.162 28 C -0.097 4.097 29 C -0.130 4.130 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.244 0.756 36 H 0.195 0.805 37 H 0.086 0.914 38 H 0.167 0.833 39 H 0.157 0.843 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.029 5.297 18.626 19.600 hybrid contribution 0.765 -1.050 0.439 1.371 sum -2.265 4.247 19.064 19.663 Atomic orbital electron populations 1.21805 0.92826 1.02587 1.02441 1.20831 0.97062 0.99524 0.90747 0.88457 1.22480 0.96415 0.86643 0.95395 1.45538 1.48204 1.27336 1.04271 1.20389 0.79512 0.80498 0.88837 1.90708 1.37144 1.37423 1.72809 1.19249 0.83316 0.84259 0.86404 1.90654 1.41302 1.36618 1.70663 1.42101 1.49836 1.24818 1.05397 1.17230 1.16227 1.03569 0.80621 1.24146 1.04347 1.01184 0.90373 1.78272 1.15883 0.98738 1.16197 1.44584 1.28109 1.14260 1.03423 1.19987 1.35390 1.08205 0.81719 0.86338 1.25679 0.95364 0.96057 1.00078 1.70211 1.25732 1.16942 1.26389 0.85732 0.78864 0.79422 0.79972 1.18593 1.19827 1.19832 1.21303 1.12532 1.03661 0.85319 1.18422 0.97660 0.96196 0.82613 1.21003 1.01836 1.00433 0.91881 1.20925 0.98271 0.97591 0.94641 1.21029 0.99690 0.96057 0.99397 1.20341 0.99367 0.99453 0.90574 1.20064 1.01291 0.97151 0.94465 0.92241 0.91997 0.91487 0.88347 0.88759 0.75554 0.80521 0.91351 0.83303 0.84286 0.85503 0.85709 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.05 37.16 0.34 -0.77 16 2 C -0.06 -0.60 3.62 -91.13 -0.33 -0.93 16 3 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.11 1.36 5.33 -3.63 -0.02 1.34 16 5 N -0.53 -7.56 3.12 -113.47 -0.35 -7.92 16 6 C 0.52 8.44 7.84 -11.70 -0.09 8.35 16 7 O -0.51 -8.55 14.66 5.46 0.08 -8.47 16 8 C 0.49 8.78 7.81 -11.69 -0.09 8.69 16 9 O -0.52 -9.98 11.22 5.45 0.06 -9.92 16 10 N -0.58 -10.78 5.45 -10.48 -0.06 -10.84 16 11 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 12 C -0.02 -0.63 10.84 -17.02 -0.18 -0.81 16 13 N -0.26 -7.34 10.39 30.81 0.32 -7.02 16 14 N -0.14 -3.68 3.73 -11.40 -0.04 -3.72 16 15 C -0.32 -8.28 10.25 -14.82 -0.15 -8.43 16 16 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 17 C 0.05 1.16 5.50 -17.50 -0.10 1.06 16 18 N -0.77 -20.86 11.81 55.50 0.66 -20.21 16 19 Si 0.94 18.48 29.55 -169.99 -5.02 13.45 16 20 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 C -0.08 -1.77 11.50 -16.38 -0.19 -1.96 16 24 C 0.15 1.93 6.62 -83.62 -0.55 1.37 16 25 C -0.13 -1.64 9.46 -39.19 -0.37 -2.01 16 26 C -0.10 -0.93 10.02 -39.71 -0.40 -1.33 16 27 C -0.14 -1.22 10.06 -39.56 -0.40 -1.62 16 28 C -0.08 -0.70 10.04 -39.61 -0.40 -1.10 16 29 C -0.13 -1.37 5.55 -104.26 -0.58 -1.95 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 1.24 7.05 -51.93 -0.37 0.87 16 34 H 0.09 1.15 7.77 -51.93 -0.40 0.75 16 35 H 0.41 6.56 8.30 -40.82 -0.34 6.23 16 36 H 0.18 4.30 5.92 -52.48 -0.31 3.99 16 37 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 38 H 0.15 2.89 8.06 -52.49 -0.42 2.46 16 39 H 0.14 1.88 6.29 -52.49 -0.33 1.55 16 40 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 357.90 15.07 5.39 5.39 Total: -1.00 -31.80 357.90 -7.74 -39.54 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -4.68 Total: 11.97 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -4.09 Total: -2.27 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.52 Total: -49.69 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.14 Total: -18.39 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.45 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.80 -7.74 -39.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775530161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.699 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds