Wall clock time and date at job start Tue Mar 31 2020 23:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47746 * 36.02269 * 3 2 1 5 5 C 1.35968 * 117.00283 * 180.02562 * 4 3 2 6 6 C 1.38714 * 119.98665 * 179.97438 * 5 4 3 7 7 C 1.38105 * 120.01579 * 179.97438 * 6 5 4 8 8 C 1.38827 * 119.98392 * 0.02562 * 7 6 5 9 9 N 1.40144 * 120.01598 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99726 * 35.09250 * 9 8 7 11 11 O 1.21601 * 119.99954 * 355.38022 * 10 9 8 12 12 N 1.34772 * 119.99917 * 175.38302 * 10 9 8 13 13 C 1.40185 * 119.99867 * 180.02562 * 12 10 9 14 14 C 1.40404 * 125.97600 * 359.97438 * 13 12 10 15 15 C 1.35246 * 107.86959 * 179.71768 * 14 13 12 16 16 N 1.34959 * 107.85786 * 0.42945 * 15 14 13 17 17 C 1.46501 * 125.97608 * 179.83897 * 16 15 14 18 18 C 1.50702 * 109.47176 * 124.71396 * 17 16 15 19 19 H 1.07993 * 120.00105 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99718 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99855 * 359.72736 * 20 18 17 22 22 Si 1.86799 * 119.99654 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46728 * 179.72738 * 22 20 18 24 24 H 1.48501 * 109.46977 * 299.72593 * 22 20 18 25 25 H 1.48494 * 109.47273 * 59.72856 * 22 20 18 26 26 N 1.31212 * 125.97273 * 179.97438 * 13 12 10 27 27 C 1.38841 * 119.97253 * 0.25302 * 8 7 6 28 28 C 1.38095 * 119.98478 * 359.51512 * 27 8 7 29 29 H 4.38457 * 5.44510 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.47015 * 276.01823 * 3 2 1 31 31 H 1.09000 * 109.47142 * 156.02593 * 3 2 1 32 32 H 1.07998 * 119.99256 * 359.97438 * 6 5 4 33 33 H 1.08001 * 120.00393 * 179.97438 * 7 6 5 34 34 H 0.97004 * 120.00008 * 215.09052 * 9 8 7 35 35 H 0.96996 * 120.00473 * 359.97438 * 12 10 9 36 36 H 1.08001 * 126.06384 * 0.02562 * 14 13 12 37 37 H 1.07995 * 126.06712 * 180.26240 * 15 14 13 38 38 H 1.08992 * 109.46854 * 4.70744 * 17 16 15 39 39 H 1.09008 * 109.46527 * 244.71354 * 17 16 15 40 40 H 0.97000 * 120.00023 * 0.27060 * 21 20 18 41 41 H 1.08004 * 120.00760 * 179.72872 * 27 8 7 42 42 H 1.08001 * 119.99274 * 180.21288 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.0887 -0.7923 5 6 4.4710 -1.2325 -0.8966 6 6 5.0014 -2.2693 -1.6500 7 6 6.3705 -2.4156 -1.7568 8 6 7.2160 -1.5249 -1.1094 9 7 8.6054 -1.6730 -1.2168 10 6 9.1489 -2.1157 -2.3680 11 8 8.4303 -2.4663 -3.2842 12 7 10.4887 -2.1699 -2.5036 13 6 11.0539 -2.6298 -3.7012 14 6 10.3467 -3.0634 -4.8339 15 6 11.2496 -3.4190 -5.7760 16 7 12.4823 -3.2289 -5.2604 17 6 13.7510 -3.4920 -5.9439 18 6 14.5948 -2.2434 -5.9351 19 1 14.2234 -1.3440 -5.4669 20 6 15.8416 -2.2498 -6.5241 21 7 16.2965 -3.3469 -7.0887 22 14 16.8871 -0.7018 -6.5138 23 1 18.1763 -0.9708 -7.2003 24 1 16.1668 0.3867 -7.2220 25 1 17.1496 -0.2910 -5.1112 26 7 12.3364 -2.7304 -3.9594 27 6 6.6845 -0.4907 -0.3507 28 6 5.3153 -0.3427 -0.2487 29 1 -1.0499 -0.0002 -0.0004 30 1 3.0094 -0.1069 1.0220 31 1 3.0089 0.9398 -0.4176 32 1 4.3436 -2.9624 -2.1533 33 1 6.7833 -3.2232 -2.3431 34 1 9.1760 -1.4568 -0.4627 35 1 11.0619 -1.8899 -1.7729 36 1 9.2722 -3.1011 -4.9367 37 1 11.0242 -3.7917 -6.7642 38 1 13.5539 -3.7902 -6.9736 39 1 14.2818 -4.2929 -5.4290 40 1 15.7533 -4.1506 -7.0943 41 1 7.3417 0.2000 0.1568 42 1 4.9017 0.4638 0.3387 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776299312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:38 Heat of formation + Delta-G solvation = 91.306603 kcal Electronic energy + Delta-G solvation = -26714.108034 eV Core-core repulsion = 22663.040609 eV Total energy + Delta-G solvation = -4051.067425 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.42668 -41.60602 -40.77367 -38.67810 -36.44849 -35.73046 -35.44752 -34.26087 -32.65221 -32.05644 -31.03696 -29.92976 -28.44227 -27.94972 -25.26694 -24.12806 -23.88012 -22.65282 -21.98121 -21.38470 -19.65941 -19.32225 -19.23327 -19.10346 -18.68442 -17.80800 -17.08175 -16.96873 -16.69816 -16.47313 -16.04223 -15.80593 -15.61735 -15.41448 -15.03618 -14.88318 -14.45333 -14.15827 -14.02877 -13.93180 -13.91195 -13.72555 -13.43594 -13.20903 -12.85730 -12.60285 -12.13375 -12.04308 -11.94840 -11.70407 -11.56567 -11.34714 -11.11710 -10.99772 -10.84113 -10.68565 -9.97471 -9.84709 -9.23564 -8.79325 -8.69629 -6.55098 0.29463 0.36337 0.97185 0.99597 1.30168 1.51912 1.58308 1.60620 1.77098 1.79663 1.97299 2.27674 2.49487 2.66832 2.80597 3.00182 3.02637 3.45251 3.83199 3.86047 3.96835 4.12351 4.14261 4.31554 4.33457 4.41796 4.56305 4.57926 4.66596 4.76607 4.84900 4.88036 4.95663 5.05549 5.07686 5.30242 5.32077 5.47733 5.55778 5.77447 5.83379 5.84868 5.94693 6.27537 6.39989 6.42030 6.54112 6.61849 7.02520 7.20796 7.28504 8.59282 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030813 B = 0.001622 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.481681 B =17259.464576 C =17608.182943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.246 4.246 3 C 0.165 3.835 4 O -0.331 6.331 5 C 0.107 3.893 6 C -0.145 4.145 7 C -0.094 4.094 8 C 0.114 3.886 9 N -0.660 5.660 10 C 0.712 3.288 11 O -0.582 6.582 12 N -0.630 5.630 13 C 0.287 3.713 14 C -0.289 4.289 15 C 0.055 3.945 16 N -0.343 5.343 17 C 0.260 3.740 18 C -0.623 4.623 19 H 0.046 0.954 20 C -0.018 4.018 21 N -0.923 5.923 22 Si 1.120 2.880 23 H -0.276 1.276 24 H -0.272 1.272 25 H -0.274 1.274 26 N -0.344 5.344 27 C -0.093 4.093 28 C -0.183 4.183 29 H 0.254 0.746 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.427 0.573 35 H 0.424 0.576 36 H 0.170 0.830 37 H 0.201 0.799 38 H 0.054 0.946 39 H 0.017 0.983 40 H 0.261 0.739 41 H 0.163 0.837 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.162 7.775 18.462 33.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.246 4.246 3 C 0.092 3.908 4 O -0.246 6.246 5 C 0.062 3.938 6 C -0.164 4.164 7 C -0.115 4.115 8 C 0.020 3.980 9 N -0.310 5.310 10 C 0.412 3.588 11 O -0.458 6.458 12 N -0.282 5.282 13 C 0.031 3.969 14 C -0.320 4.320 15 C -0.093 4.093 16 N -0.125 5.125 17 C 0.140 3.860 18 C -0.661 4.661 19 H 0.064 0.936 20 C -0.218 4.218 21 N -0.559 5.559 22 Si 0.941 3.059 23 H -0.200 1.200 24 H -0.197 1.197 25 H -0.200 1.200 26 N -0.175 5.175 27 C -0.113 4.113 28 C -0.202 4.202 29 H 0.271 0.729 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.266 0.734 35 H 0.262 0.738 36 H 0.187 0.813 37 H 0.217 0.783 38 H 0.071 0.929 39 H 0.035 0.965 40 H 0.070 0.930 41 H 0.180 0.820 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -25.170 8.098 17.477 31.694 hybrid contribution -1.601 -0.902 0.637 1.945 sum -26.771 7.195 18.114 33.115 Atomic orbital electron populations 1.25922 0.96875 0.96218 0.97502 1.22864 0.94633 1.03845 1.03243 1.19552 0.84718 0.89757 0.96796 1.86088 1.19546 1.50295 1.68688 1.19023 0.81951 0.95936 0.96937 1.20391 0.94496 0.99376 1.02138 1.21101 0.92206 0.98893 0.99269 1.17570 0.81238 0.96904 1.02291 1.42162 1.06033 1.68988 1.13787 1.15708 0.80910 0.78731 0.83407 1.90853 1.60086 1.53949 1.40908 1.41265 1.05541 1.66928 1.14423 1.19028 0.90619 0.98985 0.88295 1.21717 1.01494 1.15865 0.92913 1.23165 0.83829 1.00993 1.01267 1.48551 1.06916 1.47917 1.09150 1.19419 0.78332 0.97065 0.91160 1.22302 1.04605 0.97636 1.41507 0.93570 1.27269 0.97175 1.05477 0.91859 1.70947 1.40195 1.02108 1.42696 0.82879 0.74742 0.70883 0.77425 1.20049 1.19694 1.19990 1.77264 1.15497 1.25757 0.99005 1.20975 0.95357 0.95430 0.99552 1.21341 0.93128 1.01606 1.04119 0.72940 0.87450 0.87869 0.84998 0.85306 0.73372 0.73819 0.81258 0.78255 0.92862 0.96538 0.92977 0.81970 0.81729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 19.25 74.32 1.43 -0.12 16 2 C -0.25 -3.43 13.73 31.12 0.43 -3.01 16 3 C 0.17 1.89 5.21 70.18 0.37 2.25 16 4 O -0.33 -6.07 10.10 -93.19 -0.94 -7.01 16 5 C 0.11 1.92 6.69 22.50 0.15 2.07 16 6 C -0.14 -3.07 9.98 22.35 0.22 -2.84 16 7 C -0.09 -2.18 8.69 22.38 0.19 -1.99 16 8 C 0.11 2.18 6.30 38.10 0.24 2.42 16 9 N -0.66 -11.89 5.35 -317.06 -1.70 -13.59 16 10 C 0.71 19.33 8.38 179.06 1.50 20.83 16 11 O -0.58 -19.68 10.90 -4.03 -0.04 -19.72 16 12 N -0.63 -18.09 5.45 -321.23 -1.75 -19.84 16 13 C 0.29 11.22 8.11 133.32 1.08 12.30 16 14 C -0.29 -11.20 9.61 22.11 0.21 -10.99 16 15 C 0.06 2.18 11.44 83.52 0.96 3.14 16 16 N -0.34 -16.09 3.67 -351.84 -1.29 -17.38 16 17 C 0.26 13.34 5.57 85.63 0.48 13.81 16 18 C -0.62 -35.34 9.24 25.60 0.24 -35.10 16 19 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 20 C -0.02 -1.01 5.46 84.66 0.46 -0.55 16 21 N -0.92 -53.90 13.65 21.45 0.29 -53.61 16 22 Si 1.12 49.43 29.90 68.60 2.05 51.48 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 N -0.34 -15.87 12.42 -54.44 -0.68 -16.55 16 27 C -0.09 -1.21 9.96 22.38 0.22 -0.99 16 28 C -0.18 -2.31 9.03 22.35 0.20 -2.11 16 29 H 0.25 0.53 7.80 -4.42 -0.03 0.49 16 30 H 0.11 0.71 7.66 -2.39 -0.02 0.69 16 31 H 0.10 0.78 7.66 -2.39 -0.02 0.76 16 32 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.13 3.52 6.22 -2.91 -0.02 3.50 16 34 H 0.43 4.26 8.84 -92.71 -0.82 3.44 16 35 H 0.42 9.30 8.84 -92.71 -0.82 8.48 16 36 H 0.17 6.38 5.91 -2.91 -0.02 6.36 16 37 H 0.20 6.21 8.06 -2.91 -0.02 6.18 16 38 H 0.05 2.63 7.94 -2.39 -0.02 2.61 16 39 H 0.02 0.90 8.00 -2.38 -0.02 0.88 16 40 H 0.26 15.06 7.22 -92.71 -0.67 14.39 16 41 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.17 0.93 6.29 -2.91 -0.02 0.91 16 Total: -1.00 -78.47 373.78 3.88 -74.59 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -0.44 Total: 22.50 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 8.38 Total: -0.87 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -5.12 Total: -120.97 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.98 Total: -26.74 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.05 Total: 51.48 kcal Total: -78.47 3.88 -74.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776299312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.894 kcal (2) G-P(sol) polarization free energy of solvation -78.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds