Wall clock time and date at job start Wed Apr 1 2020 00:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.77863 * 2 1 4 4 C 1.55153 * 110.72162 * 236.75557 * 2 1 3 5 5 C 1.54913 * 101.61898 * 206.15264 * 4 2 1 6 6 N 1.47428 * 104.82944 * 36.99245 * 5 4 2 7 7 S 1.65600 * 125.64687 * 155.83803 * 6 5 4 8 8 O 1.42095 * 106.40009 * 203.56422 * 7 6 5 9 9 O 1.42102 * 106.40026 * 336.48010 * 7 6 5 10 10 N 1.65593 * 107.22039 * 90.02331 * 7 6 5 11 11 C 1.46505 * 119.99976 * 64.99788 * 10 7 6 12 12 C 1.50703 * 109.47084 * 165.00243 * 11 10 7 13 13 C 1.38301 * 119.93074 * 269.73130 * 12 11 10 14 14 C 1.38097 * 120.06906 * 179.72860 * 13 12 11 15 15 C 1.38880 * 119.93009 * 0.54174 * 14 13 12 16 16 O 1.35754 * 120.07026 * 179.75498 * 15 14 13 17 17 C 1.34829 * 117.00066 * 174.44056 * 16 15 14 18 18 H 1.08003 * 119.99807 * 5.05169 * 17 16 15 19 19 C 1.38656 * 119.99776 * 185.05160 * 17 16 15 20 20 N 1.31553 * 120.00087 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99747 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47352 * 90.00127 * 21 19 17 23 23 H 1.48507 * 109.46999 * 209.99992 * 21 19 17 24 24 H 1.48498 * 109.47269 * 330.00014 * 21 19 17 25 25 C 1.38882 * 119.86186 * 359.72452 * 15 14 13 26 26 C 1.38094 * 119.92970 * 0.02562 * 25 15 14 27 27 C 1.47023 * 108.70142 * 335.86947 * 6 5 4 28 28 H 1.09007 * 109.46562 * 181.79138 * 1 2 3 29 29 H 1.08998 * 109.47239 * 301.78863 * 1 2 3 30 30 H 1.08992 * 109.47125 * 61.78968 * 1 2 3 31 31 H 1.09006 * 111.00364 * 88.06447 * 4 2 1 32 32 H 1.09000 * 111.01056 * 324.24843 * 4 2 1 33 33 H 1.08996 * 110.36713 * 155.83295 * 5 4 2 34 34 H 1.08997 * 110.36704 * 278.15242 * 5 4 2 35 35 H 0.97005 * 120.00408 * 245.00409 * 10 7 6 36 36 H 1.08999 * 109.47076 * 284.99813 * 11 10 7 37 37 H 1.08989 * 109.46863 * 45.00268 * 11 10 7 38 38 H 1.08004 * 119.96465 * 359.97438 * 13 12 11 39 39 H 1.08001 * 120.03767 * 180.27024 * 14 13 12 40 40 H 0.96994 * 120.00342 * 180.02562 * 20 19 17 41 41 H 1.08001 * 120.03395 * 179.97438 * 25 15 14 42 42 H 1.08001 * 119.96750 * 179.97438 * 26 25 15 43 43 H 1.09004 * 109.87667 * 120.47970 * 27 6 5 44 44 H 1.09000 * 109.87944 * 241.48465 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0790 -0.7955 -1.2137 5 6 3.4633 -1.2507 -0.6880 6 7 3.2449 -1.5515 0.7386 7 16 4.1626 -2.5766 1.6602 8 8 3.3350 -2.9989 2.7354 9 8 4.7845 -3.4802 0.7569 10 7 5.3788 -1.6758 2.3321 11 6 5.0609 -0.6180 3.2946 12 6 6.3151 -0.2075 4.0223 13 6 6.6707 -0.8440 5.1976 14 6 7.8223 -0.4740 5.8638 15 6 8.6178 0.5461 5.3585 16 8 9.7479 0.9155 6.0138 17 6 10.5335 1.8306 5.4111 18 1 10.2128 2.2952 4.4904 19 6 11.7532 2.1752 5.9735 20 7 12.1440 1.6089 7.0947 21 14 12.8420 3.4425 5.1381 22 1 12.5061 4.7964 5.6473 23 1 14.2663 3.1423 5.4324 24 1 12.6193 3.3962 3.6707 25 6 8.2551 1.1871 4.1810 26 6 7.1051 0.8090 3.5167 27 6 2.0771 -0.7912 1.2073 28 1 -0.3633 -1.0273 0.0321 29 1 -0.3633 0.5413 0.8735 30 1 -0.3633 0.4857 -0.9055 31 1 2.1851 -0.1519 -2.0870 32 1 1.4449 -1.6533 -1.4378 33 1 3.7953 -2.1436 -1.2176 34 1 4.1936 -0.4492 -0.7993 35 1 6.3017 -1.8484 2.0885 36 1 4.6494 0.2421 2.7664 37 1 4.3289 -0.9879 4.0124 38 1 6.0491 -1.6340 5.5926 39 1 8.1018 -0.9744 6.7792 40 1 12.9970 1.8503 7.4884 41 1 8.8715 1.9810 3.7858 42 1 6.8222 1.3073 2.6013 43 1 1.3138 -1.4755 1.5780 44 1 2.3754 -0.1046 1.9996 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777991529.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:03 Heat of formation + Delta-G solvation = -108.452648 kcal Electronic energy + Delta-G solvation = -26952.933898 eV Core-core repulsion = 22996.355461 eV Total energy + Delta-G solvation = -3956.578436 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.83061 -39.55825 -38.72436 -38.34988 -37.00805 -35.88088 -34.25358 -33.42369 -31.82180 -30.94975 -30.41772 -27.59589 -26.90773 -25.92011 -23.64075 -23.32242 -22.21972 -21.18749 -20.47114 -19.87296 -19.08015 -18.85326 -18.48708 -17.36563 -17.05409 -16.49772 -16.35851 -15.99564 -15.57851 -15.46539 -15.13970 -14.93746 -14.65894 -14.48552 -14.44389 -14.30951 -13.94481 -13.80769 -13.60374 -13.50657 -13.47198 -13.29379 -13.22784 -12.94740 -12.88758 -12.46139 -12.39658 -12.33371 -12.16198 -12.08309 -11.83888 -11.58148 -11.43515 -11.19924 -10.81127 -10.51496 -10.01774 -9.80197 -8.99789 -8.48120 -6.16483 -0.52314 0.58488 0.61893 1.35644 1.44493 1.53157 1.93586 2.17232 2.52937 2.83212 3.13777 3.20720 3.49388 3.60480 3.80548 3.85557 4.01159 4.04911 4.19082 4.35890 4.44477 4.45285 4.53344 4.58338 4.60903 4.67809 4.80395 4.83366 4.86308 4.93401 5.00710 5.05356 5.13447 5.14484 5.21571 5.24624 5.28283 5.30624 5.46082 5.54533 5.57306 5.69750 5.75814 6.01662 6.04919 6.18735 6.96560 7.76727 8.74952 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019316 B = 0.002271 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.260549 B =12327.194117 C =12850.857038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.098 0.902 4 C -0.121 4.121 5 C 0.107 3.893 6 N -1.018 6.018 7 S 2.820 3.180 8 O -1.005 7.005 9 O -1.009 7.009 10 N -1.118 6.118 11 C 0.179 3.821 12 C -0.176 4.176 13 C -0.052 4.052 14 C -0.208 4.208 15 C 0.119 3.881 16 O -0.231 6.231 17 C -0.413 4.413 18 H 0.105 0.895 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.020 2.980 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.251 1.251 25 C -0.244 4.244 26 C -0.044 4.044 27 C 0.110 3.890 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.421 0.579 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.142 0.858 39 H 0.111 0.889 40 H 0.273 0.727 41 H 0.122 0.878 42 H 0.150 0.850 43 H 0.064 0.936 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.678 -0.430 -18.421 29.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.116 0.884 4 C -0.160 4.160 5 C -0.018 4.018 6 N -0.860 5.860 7 S 2.830 3.170 8 O -0.988 6.988 9 O -0.993 6.993 10 N -0.881 5.881 11 C 0.054 3.946 12 C -0.178 4.178 13 C -0.071 4.071 14 C -0.228 4.228 15 C 0.068 3.932 16 O -0.138 6.138 17 C -0.489 4.489 18 H 0.122 0.878 19 C -0.222 4.222 20 N -0.559 5.559 21 Si 0.839 3.161 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.175 1.175 25 C -0.263 4.263 26 C -0.063 4.063 27 C -0.014 4.014 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.256 0.744 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.160 0.840 39 H 0.129 0.871 40 H 0.082 0.918 41 H 0.140 0.860 42 H 0.167 0.833 43 H 0.083 0.917 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.718 -1.481 -17.822 28.913 hybrid contribution 1.549 0.540 0.269 1.662 sum -21.170 -0.941 -17.553 27.516 Atomic orbital electron populations 1.21769 0.93299 1.02129 1.02859 1.22241 0.96659 0.99640 0.93022 0.88380 1.22880 0.94374 1.00527 0.98264 1.22260 0.99503 1.01257 0.78736 1.58796 1.42320 1.63403 1.21515 1.00524 0.72158 0.72364 0.71973 1.93565 1.69020 1.80497 1.55730 1.93569 1.77308 1.62481 1.65929 1.55931 1.22812 1.52132 1.57186 1.20055 0.94026 0.90092 0.90435 1.19545 0.99700 1.00802 0.97781 1.20932 0.94017 0.97958 0.94177 1.20439 0.98262 1.00464 1.03601 1.19999 0.87574 0.93524 0.92070 1.83950 1.29918 1.55249 1.44650 1.21851 0.99777 1.18028 1.09245 0.87755 1.26623 0.97861 1.00796 0.96894 1.70184 1.22348 1.43453 1.19882 0.84571 0.76342 0.76540 0.78668 1.18741 1.19852 1.17460 1.21281 1.01549 1.05270 0.98197 1.20998 0.91751 0.95052 0.98475 1.22096 0.86590 0.94615 0.98149 0.92872 0.91893 0.91142 0.87946 0.90808 0.90877 0.89953 0.74431 0.88675 0.89756 0.84045 0.87134 0.91845 0.86025 0.83282 0.91739 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.15 71.98 0.66 -0.30 16 2 C -0.10 -0.77 3.55 -9.59 -0.03 -0.80 16 3 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 4 C -0.12 -0.98 6.53 31.99 0.21 -0.77 16 5 C 0.11 1.31 7.11 86.86 0.62 1.93 16 6 N -1.02 -16.24 3.76 -506.33 -1.90 -18.14 16 7 S 2.82 63.20 6.39 -56.49 -0.36 62.84 16 8 O -1.00 -28.36 17.19 -128.00 -2.20 -30.56 16 9 O -1.01 -28.73 17.46 -128.00 -2.23 -30.97 16 10 N -1.12 -22.73 6.05 -190.79 -1.15 -23.89 16 11 C 0.18 3.58 6.37 85.63 0.55 4.12 16 12 C -0.18 -4.89 5.28 -19.83 -0.10 -4.99 16 13 C -0.05 -1.68 9.69 22.25 0.22 -1.47 16 14 C -0.21 -8.66 9.99 22.39 0.22 -8.44 16 15 C 0.12 5.74 6.65 22.58 0.15 5.89 16 16 O -0.23 -13.68 9.76 -22.77 -0.22 -13.91 16 17 C -0.41 -23.50 9.49 67.92 0.64 -22.85 16 18 H 0.11 5.37 5.20 -2.91 -0.02 5.35 16 19 C -0.02 -1.35 5.49 84.83 0.47 -0.89 16 20 N -0.92 -56.07 13.67 21.61 0.30 -55.77 16 21 Si 1.02 41.93 29.55 68.60 2.03 43.96 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 24 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 25 C -0.24 -9.86 9.17 22.39 0.21 -9.65 16 26 C -0.04 -1.33 9.69 22.25 0.22 -1.11 16 27 C 0.11 1.39 6.59 86.74 0.57 1.97 16 28 H 0.05 0.42 8.10 -2.38 -0.02 0.40 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.07 0.65 8.05 -2.39 -0.02 0.63 16 33 H 0.07 1.03 7.78 -2.39 -0.02 1.01 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.42 8.56 8.65 -96.74 -0.84 7.73 16 36 H 0.10 1.36 8.08 -2.39 -0.02 1.34 16 37 H 0.08 1.65 7.69 -2.39 -0.02 1.63 16 38 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 39 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 40 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 41 H 0.12 5.00 5.64 -2.91 -0.02 4.98 16 42 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 43 H 0.06 0.91 7.79 -2.38 -0.02 0.89 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -78.02 378.19 -0.99 -79.00 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.18 Total: 24.81 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 4.58 Total: -37.37 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -2.76 Total: -97.80 kcal Atomic # 8 Polarization: -70.77 SS G_CDS: -4.66 Total: -75.43 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 63.20 SS G_CDS: -0.36 Total: 62.84 kcal Total: -78.02 -0.99 -79.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777991529.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.448 kcal (2) G-P(sol) polarization free energy of solvation -78.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds