Wall clock time and date at job start Wed Apr 1 2020 00:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00028 * 2 1 4 4 H 1.09002 * 109.47243 * 328.49557 * 3 2 1 5 5 C 1.50702 * 109.47428 * 88.49496 * 3 2 1 6 6 C 1.38236 * 120.00277 * 25.00711 * 5 3 2 7 7 C 1.38223 * 120.01218 * 180.02562 * 6 5 3 8 8 C 1.38257 * 120.02818 * 359.97438 * 7 6 5 9 9 C 1.38201 * 120.00982 * 359.97438 * 8 7 6 10 10 C 1.38327 * 120.00879 * 204.72784 * 5 3 2 11 11 Cl 1.73600 * 120.01327 * 359.97438 * 10 5 3 12 12 C 1.52998 * 109.47394 * 208.49993 * 3 2 1 13 13 H 1.08998 * 109.47318 * 180.58302 * 12 3 2 14 14 C 1.52996 * 109.47139 * 60.58266 * 12 3 2 15 15 N 1.46896 * 109.46891 * 300.58661 * 12 3 2 16 16 C 1.46905 * 110.99852 * 205.00088 * 15 12 3 17 17 C 1.50708 * 109.46907 * 180.02562 * 16 15 12 18 18 O 1.21275 * 120.00175 * 359.71796 * 17 16 15 19 19 N 1.34778 * 119.99665 * 180.02562 * 17 16 15 20 20 C 1.46502 * 119.99938 * 179.97438 * 19 17 16 21 21 C 1.50695 * 109.47108 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00206 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.00154 * 180.02562 * 21 20 19 24 24 N 1.31521 * 119.99783 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00265 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46912 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46783 * 120.00191 * 25 23 21 28 28 H 1.48504 * 109.47002 * 239.99949 * 25 23 21 29 29 H 1.08997 * 109.47105 * 55.67004 * 1 2 3 30 30 H 1.08997 * 109.47068 * 175.67021 * 1 2 3 31 31 H 1.09001 * 109.47287 * 295.66695 * 1 2 3 32 32 H 1.08004 * 119.99309 * 359.97438 * 6 5 3 33 33 H 1.08001 * 119.98222 * 179.97438 * 7 6 5 34 34 H 1.07995 * 119.99743 * 179.97438 * 8 7 6 35 35 H 1.08001 * 120.00026 * 180.02562 * 9 8 7 36 36 H 1.09007 * 109.47321 * 182.71562 * 14 12 3 37 37 H 1.09000 * 109.47390 * 302.71711 * 14 12 3 38 38 H 1.09003 * 109.47297 * 62.71610 * 14 12 3 39 39 H 1.00899 * 111.00156 * 328.94707 * 15 12 3 40 40 H 1.08992 * 109.47383 * 59.99741 * 16 15 12 41 41 H 1.09005 * 109.47023 * 299.99291 * 16 15 12 42 42 H 0.97001 * 120.00231 * 359.97438 * 19 17 16 43 43 H 1.08997 * 109.46973 * 300.00110 * 20 19 17 44 44 H 1.09000 * 109.46768 * 60.00120 * 20 19 17 45 45 H 0.96998 * 119.99975 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3576 1.9937 -0.5370 5 6 2.1805 1.7795 1.4203 6 6 2.2960 0.8607 2.4466 7 6 2.4517 1.2954 3.7495 8 6 2.4924 2.6492 4.0269 9 6 2.3781 3.5687 3.0016 10 6 2.2270 3.1342 1.6966 11 17 2.0899 4.2885 0.4073 12 6 3.3758 1.2557 -0.6883 13 1 3.8236 2.2494 -0.6791 14 6 3.2012 0.7884 -2.1346 15 7 4.2508 0.3175 0.0272 16 6 5.6657 0.6511 -0.1850 17 6 6.5308 -0.3311 0.5620 18 8 6.0192 -1.2182 1.2116 19 7 7.8731 -0.2199 0.5131 20 6 8.7142 -1.1743 1.2396 21 6 10.1655 -0.8322 1.0219 22 1 10.4346 0.0121 0.4045 23 6 11.1500 -1.5969 1.6110 24 7 10.8224 -2.6254 2.3625 25 14 12.9491 -1.1732 1.3406 26 1 13.0500 0.0195 0.4617 27 1 13.5905 -0.8802 2.6475 28 1 13.6370 -2.3218 0.6981 29 1 -0.3633 0.5795 -0.8486 30 1 -0.3633 -1.0247 -0.0776 31 1 -0.3634 0.4451 0.9263 32 1 2.2639 -0.1970 2.2305 33 1 2.5415 0.5771 4.5510 34 1 2.6136 2.9883 5.0451 35 1 2.4104 4.6262 3.2184 36 1 4.1784 0.7067 -2.6106 37 1 2.7094 -0.1843 -2.1454 38 1 2.5913 1.5099 -2.6785 39 1 4.0285 0.2942 1.0111 40 1 5.8602 1.6591 0.1813 41 1 5.8952 0.6007 -1.2494 42 1 8.2823 0.4921 -0.0031 43 1 8.4844 -1.1243 2.3039 44 1 8.5199 -2.1823 0.8729 45 1 11.5150 -3.1636 2.7766 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778247986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:42 Heat of formation + Delta-G solvation = -65.013905 kcal Electronic energy + Delta-G solvation = -27451.940818 eV Core-core repulsion = 23495.202320 eV Total energy + Delta-G solvation = -3956.738498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.36851 -38.77384 -38.03731 -36.76300 -35.90254 -34.08351 -32.33353 -32.08892 -31.08788 -30.59050 -27.70806 -27.35378 -25.90824 -25.25464 -22.92212 -22.43800 -21.89431 -20.41759 -19.61856 -17.66166 -17.36205 -16.97829 -16.18856 -16.06890 -15.48384 -15.39416 -15.10351 -14.92993 -14.76856 -14.38148 -14.19466 -14.02648 -13.85872 -13.50060 -13.41914 -12.80964 -12.56005 -12.35849 -12.24930 -12.01090 -11.93720 -11.84348 -11.69489 -11.63070 -11.49689 -11.19436 -11.06305 -10.98777 -10.91488 -10.86120 -10.29411 -9.89381 -9.34788 -9.19231 -8.98460 -8.92428 -8.70729 -8.25773 -7.80791 -6.14173 -4.20723 0.83377 0.98506 1.79878 3.24839 3.31765 3.32750 3.35016 3.45035 3.47758 3.88725 4.24145 4.33674 4.57720 4.59688 4.68901 4.77321 4.90827 5.02389 5.13149 5.16175 5.19317 5.21864 5.32225 5.35868 5.42156 5.49811 5.51008 5.57412 5.65757 5.69780 5.75794 5.89598 5.91758 6.07653 6.20918 6.33557 6.53639 6.87358 7.10047 7.36878 7.49820 7.53436 7.56827 7.71706 8.00552 8.69142 8.82928 9.18306 9.46133 10.96103 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.002602 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.723701 B =10760.317765 C =11150.896472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.353 6.353 3 C 0.129 3.871 4 H 0.081 0.919 5 C -0.115 4.115 6 C -0.083 4.083 7 C -0.111 4.111 8 C -0.105 4.105 9 C -0.113 4.113 10 C -0.031 4.031 11 Cl -0.071 7.071 12 C 0.094 3.906 13 H 0.057 0.943 14 C -0.138 4.138 15 N -0.657 5.657 16 C 0.037 3.963 17 C 0.498 3.502 18 O -0.542 6.542 19 N -0.716 5.716 20 C 0.251 3.749 21 C -0.542 4.542 22 H 0.063 0.937 23 C 0.063 3.937 24 N -0.885 5.885 25 Si 0.903 3.097 26 H -0.272 1.272 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.039 0.961 32 H 0.147 0.853 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.352 0.648 40 H 0.050 0.950 41 H 0.096 0.904 42 H 0.389 0.611 43 H 0.025 0.975 44 H 0.027 0.973 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.753 14.156 -3.242 26.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.270 6.270 3 C 0.070 3.930 4 H 0.099 0.901 5 C -0.117 4.117 6 C -0.101 4.101 7 C -0.129 4.129 8 C -0.123 4.123 9 C -0.132 4.132 10 C -0.058 4.058 11 Cl -0.042 7.042 12 C -0.016 4.016 13 H 0.074 0.926 14 C -0.196 4.196 15 N -0.293 5.293 16 C -0.095 4.095 17 C 0.282 3.718 18 O -0.419 6.419 19 N -0.365 5.365 20 C 0.130 3.870 21 C -0.580 4.580 22 H 0.081 0.919 23 C -0.141 4.141 24 N -0.523 5.523 25 Si 0.730 3.270 26 H -0.196 1.196 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.057 0.943 32 H 0.164 0.836 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.175 0.825 40 H 0.068 0.932 41 H 0.114 0.886 42 H 0.221 0.779 43 H 0.043 0.957 44 H 0.045 0.955 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.941 12.802 -3.256 26.472 hybrid contribution 1.182 1.716 0.215 2.095 sum -21.759 14.518 -3.040 26.334 Atomic orbital electron populations 1.22853 0.81518 1.02889 0.99807 1.88094 1.18984 1.25515 1.94453 1.21203 0.95664 0.85767 0.90399 0.90116 1.20350 1.02230 0.91439 0.97655 1.21188 0.96748 1.00719 0.91488 1.21393 0.98425 0.95997 0.97119 1.21200 0.98971 0.93010 0.99161 1.21028 1.00924 1.00663 0.90600 1.20770 1.05859 0.89520 0.89605 1.98363 1.96345 1.59363 1.50171 1.21619 0.90261 0.94705 0.95049 0.92565 1.21751 1.02026 1.02244 0.93596 1.60170 1.00810 1.50673 1.17634 1.21929 0.89300 0.96633 1.01676 1.20326 0.83288 0.85986 0.82249 1.90655 1.73611 1.35093 1.42575 1.46439 1.05422 1.33319 1.51303 1.19076 0.88031 0.87967 0.91907 1.21275 0.90449 1.14409 1.31862 0.91891 1.24958 0.99595 0.94747 0.94773 1.69991 1.33565 1.17245 1.31488 0.86371 0.84189 0.78385 0.78018 1.19646 1.20839 1.20792 0.94082 0.89328 0.94276 0.83581 0.84915 0.84974 0.84918 0.92243 0.90820 0.93001 0.82528 0.93190 0.88584 0.77861 0.95676 0.95540 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.85 101.05 1.10 1.31 16 2 O -0.35 -4.06 8.35 -35.23 -0.29 -4.36 16 3 C 0.13 1.39 1.60 -27.88 -0.04 1.34 16 4 H 0.08 0.77 6.74 -51.93 -0.35 0.42 16 5 C -0.12 -1.27 4.47 -104.59 -0.47 -1.74 16 6 C -0.08 -0.95 7.65 -39.59 -0.30 -1.25 16 7 C -0.11 -1.12 10.05 -39.58 -0.40 -1.52 16 8 C -0.11 -0.95 10.05 -39.59 -0.40 -1.35 16 9 C -0.11 -1.06 9.83 -39.55 -0.39 -1.45 16 10 C -0.03 -0.32 6.31 -39.50 -0.25 -0.57 16 11 Cl -0.07 -0.67 27.13 -51.86 -1.41 -2.07 16 12 C 0.09 1.11 2.47 -67.72 -0.17 0.94 16 13 H 0.06 0.64 7.52 -51.93 -0.39 0.25 16 14 C -0.14 -1.50 9.33 37.16 0.35 -1.15 16 15 N -0.66 -9.91 5.79 -107.99 -0.63 -10.54 16 16 C 0.04 0.57 5.97 -4.97 -0.03 0.54 16 17 C 0.50 10.29 7.87 -10.98 -0.09 10.20 16 18 O -0.54 -13.42 16.20 5.56 0.09 -13.33 16 19 N -0.72 -15.43 5.55 -61.47 -0.34 -15.77 16 20 C 0.25 6.78 5.43 -5.20 -0.03 6.75 16 21 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 22 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 23 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 24 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 25 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H 0.04 0.29 7.99 -51.93 -0.41 -0.13 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.15 1.79 7.24 -52.48 -0.38 1.41 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.06 0.64 7.40 -51.93 -0.38 0.26 16 37 H 0.07 0.88 7.62 -51.93 -0.40 0.49 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.35 5.65 5.43 -39.29 -0.21 5.43 16 40 H 0.05 0.68 8.05 -51.93 -0.42 0.27 16 41 H 0.10 1.30 7.39 -51.93 -0.38 0.92 16 42 H 0.39 7.18 8.32 -40.82 -0.34 6.84 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 388.25 15.07 5.85 5.85 Total: -1.00 -33.14 388.25 -9.13 -42.27 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.59 Total: 9.02 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.53 Total: -1.47 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.23 Total: -51.91 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.20 Total: -17.69 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.41 Total: -2.07 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.14 -9.13 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778247986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.741 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds