Wall clock time and date at job start Wed Apr 1 2020 00:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 119.99667 * 2 1 4 4 O 1.21285 * 120.00067 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00021 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47472 * 180.02562 * 5 3 2 7 7 H 1.09000 * 109.47203 * 305.00838 * 6 5 3 8 8 C 1.52993 * 109.47690 * 185.00037 * 6 5 3 9 9 N 1.46509 * 109.47046 * 64.99989 * 6 5 3 10 10 S 1.65604 * 119.99844 * 215.00479 * 9 6 5 11 11 O 1.42095 * 106.40018 * 311.45546 * 10 9 6 12 12 O 1.42098 * 106.39919 * 178.53897 * 10 9 6 13 13 C 1.76201 * 107.21824 * 64.99985 * 10 9 6 14 14 C 1.38234 * 120.00103 * 90.00267 * 13 10 9 15 15 C 1.38238 * 119.99675 * 180.27958 * 14 13 10 16 16 C 1.38229 * 120.00124 * 359.45911 * 15 14 13 17 17 C 1.50699 * 120.00230 * 180.28369 * 16 15 14 18 18 C 1.50691 * 109.47261 * 270.27992 * 17 16 15 19 19 H 1.08000 * 120.00158 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00152 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99921 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00052 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46847 * 90.00413 * 22 20 18 24 24 H 1.48495 * 109.47242 * 210.00754 * 22 20 18 25 25 H 1.48504 * 109.46950 * 330.00525 * 22 20 18 26 26 C 1.38234 * 119.99957 * 0.56005 * 16 15 14 27 27 C 1.38234 * 119.99657 * 270.01898 * 13 10 9 28 28 H 1.09001 * 109.47056 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47674 * 299.99339 * 1 2 3 30 30 H 1.09000 * 109.47360 * 60.00365 * 1 2 3 31 31 H 0.96994 * 120.00083 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47277 * 60.00218 * 5 3 2 33 33 H 1.09003 * 109.47232 * 300.00361 * 5 3 2 34 34 H 1.09004 * 109.47269 * 299.99926 * 8 6 5 35 35 H 1.08997 * 109.47074 * 59.99546 * 8 6 5 36 36 H 1.09001 * 109.47625 * 180.02562 * 8 6 5 37 37 H 0.96997 * 119.99899 * 35.00052 * 9 6 5 38 38 H 1.08002 * 119.99744 * 359.97438 * 14 13 10 39 39 H 1.08004 * 119.99577 * 179.72816 * 15 14 13 40 40 H 1.09007 * 109.47085 * 30.27493 * 17 16 15 41 41 H 1.08998 * 109.47270 * 150.26989 * 17 16 15 42 42 H 0.96999 * 119.99731 * 179.97438 * 21 20 18 43 43 H 1.08001 * 120.00274 * 179.72697 * 26 16 15 44 44 H 1.07997 * 120.00460 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5323 2.2176 0.0005 5 6 3.6457 1.1673 0.0006 6 6 4.1557 2.6098 0.0011 7 1 3.7213 3.1491 -0.8407 8 6 5.6805 2.6119 -0.1240 9 7 3.7677 3.2646 1.2530 10 16 3.3708 4.8724 1.2581 11 8 4.4029 5.5426 0.5476 12 8 3.0132 5.1930 2.5954 13 6 1.9063 5.0512 0.2949 14 6 0.6662 4.9540 0.8979 15 6 -0.4827 5.0885 0.1411 16 6 -0.3916 5.3314 -1.2167 17 6 -1.6441 5.4844 -2.0406 18 6 -2.0715 4.1360 -2.5601 19 1 -1.4938 3.2562 -2.3182 20 6 -3.1996 4.0256 -3.3450 21 7 -3.5724 2.8488 -3.7989 22 14 -4.1986 5.5474 -3.7640 23 1 -3.6845 6.1461 -5.0219 24 1 -5.6239 5.1705 -3.9415 25 1 -4.0815 6.5354 -2.6615 26 6 0.8485 5.4282 -1.8197 27 6 1.9975 5.2883 -1.0639 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 4.0095 0.6534 -0.8892 33 1 4.0088 0.6537 0.8908 34 1 6.1149 2.0727 0.7179 35 1 5.9693 2.1247 -1.0553 36 1 6.0439 3.6395 -0.1232 37 1 3.7431 2.7563 2.0788 38 1 0.5951 4.7680 1.9594 39 1 -1.4516 5.0082 0.6115 40 1 -2.4374 5.9033 -1.4213 41 1 -1.4477 6.1517 -2.8798 42 1 -4.3662 2.7711 -4.3508 43 1 0.9198 5.6136 -2.8813 44 1 2.9663 5.3644 -1.5351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885221122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:23 Heat of formation + Delta-G solvation = -92.808011 kcal Electronic energy + Delta-G solvation = -28637.077969 eV Core-core repulsion = 24681.177935 eV Total energy + Delta-G solvation = -3955.900034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.69799 -38.59183 -37.10720 -36.43719 -35.62779 -34.38514 -33.52916 -31.58187 -30.92648 -30.36040 -28.74015 -27.78908 -25.90825 -23.34342 -22.25286 -21.80202 -20.56665 -20.35386 -19.41642 -17.83496 -17.42824 -16.94712 -16.81409 -16.42984 -15.57565 -15.35561 -14.96173 -14.80467 -14.21572 -14.15861 -14.05285 -13.74812 -13.54190 -13.14535 -12.93444 -12.89979 -12.59488 -12.35990 -12.29529 -12.08470 -11.99085 -11.91741 -11.80114 -11.75488 -11.66427 -11.56646 -11.10435 -10.78709 -10.72399 -10.36659 -10.18509 -10.01322 -9.72283 -9.49253 -9.41105 -8.99183 -8.62978 -8.31280 -8.15986 -6.12489 -4.11342 0.71076 1.59642 2.04735 2.78021 3.18389 3.25058 3.26503 3.33106 3.36071 3.92528 4.36019 4.37233 4.49233 4.61160 4.65340 4.90848 5.16556 5.19284 5.21843 5.30643 5.35092 5.40491 5.44009 5.44531 5.64225 5.73642 5.80215 5.98181 6.07076 6.07594 6.08746 6.13162 6.45654 6.47255 6.49891 6.70621 6.88870 6.93532 6.97379 6.98826 7.51296 7.52359 7.55204 7.66570 8.36349 8.44238 8.93739 9.47721 11.00248 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012558 B = 0.004192 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.180180 B = 6678.092504 C = 8015.238067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.740 5.740 3 C 0.496 3.504 4 O -0.501 6.501 5 C -0.148 4.148 6 C 0.169 3.831 7 H 0.094 0.906 8 C -0.172 4.172 9 N -1.106 6.106 10 S 2.699 3.301 11 O -0.970 6.970 12 O -0.974 6.974 13 C -0.672 4.672 14 C -0.001 4.001 15 C -0.139 4.139 16 C 0.029 3.971 17 C 0.006 3.994 18 C -0.509 4.509 19 H 0.076 0.924 20 C 0.071 3.929 21 N -0.899 5.899 22 Si 0.876 3.124 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.265 1.265 26 C -0.143 4.143 27 C -0.021 4.021 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.396 0.604 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.412 0.588 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.031 0.969 41 H 0.026 0.974 42 H 0.264 0.736 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.208 -6.607 8.832 19.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.392 5.392 3 C 0.281 3.719 4 O -0.374 6.374 5 C -0.189 4.189 6 C 0.061 3.939 7 H 0.112 0.888 8 C -0.231 4.231 9 N -0.863 5.863 10 S 2.793 3.207 11 O -0.960 6.960 12 O -0.965 6.965 13 C -0.762 4.762 14 C -0.020 4.020 15 C -0.158 4.158 16 C 0.029 3.971 17 C -0.031 4.031 18 C -0.547 4.547 19 H 0.094 0.906 20 C -0.131 4.131 21 N -0.538 5.538 22 Si 0.703 3.297 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.189 1.189 26 C -0.162 4.162 27 C -0.040 4.040 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.228 0.772 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.246 0.754 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.049 0.951 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 16.086 -5.143 8.984 19.129 hybrid contribution -1.195 -0.574 -0.509 1.420 sum 14.891 -5.717 8.475 18.062 Atomic orbital electron populations 1.21542 0.79027 1.01817 1.03254 1.45800 1.08001 1.08379 1.77042 1.20660 0.89941 0.84225 0.77094 1.90908 1.69805 1.30260 1.46417 1.22044 0.93170 0.98706 1.04998 1.20455 0.94656 0.92395 0.86399 0.88789 1.22350 0.94624 1.03949 1.02197 1.55485 1.84610 1.30652 1.15555 1.01428 0.74020 0.72012 0.73263 1.93543 1.55487 1.72033 1.74943 1.93544 1.84815 1.82387 1.35733 1.30007 1.16917 1.21372 1.07892 1.20509 0.91183 0.91680 0.98662 1.21030 0.97979 1.02716 0.94066 1.20518 0.95971 0.87067 0.93571 1.18958 0.90705 0.98791 0.94665 1.20843 1.10620 0.92143 1.31081 0.90612 1.24967 0.96988 0.95846 0.95272 1.69890 1.25491 1.23083 1.35287 0.86827 0.79604 0.83842 0.79385 1.20141 1.21205 1.18947 1.21052 0.91997 1.03430 0.99719 1.20599 0.98614 0.93242 0.91584 0.91243 0.92331 0.91223 0.77198 0.87807 0.88504 0.92082 0.91369 0.90596 0.75419 0.86066 0.86048 0.95093 0.95546 0.92611 0.85982 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 10.70 59.85 0.64 1.70 16 2 N -0.74 -7.41 5.71 -67.08 -0.38 -7.79 16 3 C 0.50 5.87 7.69 -10.99 -0.08 5.78 16 4 O -0.50 -8.18 13.01 5.55 0.07 -8.11 16 5 C -0.15 -1.12 5.30 -27.89 -0.15 -1.27 16 6 C 0.17 1.65 2.33 -67.93 -0.16 1.49 16 7 H 0.09 1.09 7.04 -51.93 -0.37 0.73 16 8 C -0.17 -1.36 9.52 37.15 0.35 -1.01 16 9 N -1.11 -12.24 4.61 -4.89 -0.02 -12.26 16 10 S 2.70 40.41 5.65 -107.50 -0.61 39.80 16 11 O -0.97 -15.97 16.54 -57.17 -0.95 -16.92 16 12 O -0.97 -16.75 17.28 -57.17 -0.99 -17.74 16 13 C -0.67 -11.56 4.29 -39.58 -0.17 -11.73 16 14 C 0.00 -0.01 8.80 -39.58 -0.35 -0.36 16 15 C -0.14 -2.79 9.70 -39.58 -0.38 -3.17 16 16 C 0.03 0.63 5.07 -104.63 -0.53 0.10 16 17 C 0.01 0.14 4.17 -29.04 -0.12 0.02 16 18 C -0.51 -14.27 9.65 -34.44 -0.33 -14.60 16 19 H 0.08 2.34 7.98 -52.49 -0.42 1.92 16 20 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 21 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 22 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 26 C -0.14 -2.82 9.70 -39.58 -0.38 -3.20 16 27 C -0.02 -0.36 8.90 -39.58 -0.35 -0.72 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.40 2.47 8.83 -40.82 -0.36 2.11 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.74 7.64 -51.93 -0.40 0.34 16 37 H 0.41 3.64 8.84 -34.48 -0.30 3.33 16 38 H 0.12 2.00 7.62 -52.49 -0.40 1.60 16 39 H 0.12 2.32 8.06 -52.48 -0.42 1.90 16 40 H 0.03 0.73 7.15 -51.93 -0.37 0.36 16 41 H 0.03 0.62 7.51 -51.93 -0.39 0.23 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 43 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 44 H 0.12 1.86 7.62 -52.49 -0.40 1.46 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -36.55 377.94 -9.57 -46.12 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.38 Total: 5.91 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -2.12 Total: -25.05 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.37 Total: -46.23 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -1.86 Total: -42.76 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Atomic # 16 Polarization: 40.41 SS G_CDS: -0.61 Total: 39.80 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.55 -9.57 -46.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885221122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.692 kcal (2) G-P(sol) polarization free energy of solvation -36.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds