Wall clock time and date at job start Wed Apr 1 2020 00:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47126 * 2 1 4 4 C 1.50697 * 109.47181 * 239.99353 * 2 1 3 5 5 H 1.07992 * 120.00363 * 240.00301 * 4 2 1 6 6 C 1.37879 * 119.99685 * 60.00290 * 4 2 1 7 7 N 1.31512 * 120.00186 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99870 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47133 * 59.99869 * 8 6 4 10 10 H 1.48495 * 109.47247 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47185 * 300.00125 * 8 6 4 12 12 C 1.50702 * 109.46903 * 119.99477 * 2 1 3 13 13 O 1.21279 * 120.00084 * 119.99786 * 12 2 1 14 14 N 1.34774 * 120.00321 * 300.00087 * 12 2 1 15 15 C 1.46490 * 120.00183 * 179.97438 * 14 12 2 16 16 C 1.50702 * 109.47274 * 179.97438 * 15 14 12 17 17 C 1.38317 * 119.96073 * 269.73155 * 16 15 14 18 18 C 1.38265 * 120.14756 * 179.72297 * 17 16 15 19 19 C 1.38130 * 120.07354 * 0.54970 * 18 17 16 20 20 C 1.38893 * 119.92448 * 359.72040 * 19 18 17 21 21 N 1.39669 * 120.07220 * 179.97438 * 20 19 18 22 22 C 1.46503 * 120.00053 * 121.73784 * 21 20 19 23 23 S 1.65605 * 120.00133 * 301.73046 * 21 20 19 24 24 C 1.81408 * 104.44663 * 95.83931 * 23 21 20 25 25 O 1.42100 * 104.27748 * 211.90955 * 23 21 20 26 26 O 1.42093 * 104.27635 * 339.77103 * 23 21 20 27 27 C 1.38085 * 119.96601 * 89.99986 * 16 15 14 28 28 H 1.08991 * 109.47292 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46937 * 300.00559 * 1 2 3 30 30 H 1.09004 * 109.47061 * 60.00099 * 1 2 3 31 31 H 0.97001 * 119.99779 * 179.97438 * 7 6 4 32 32 H 0.97008 * 119.99715 * 0.02562 * 14 12 2 33 33 H 1.08996 * 109.47610 * 299.99882 * 15 14 12 34 34 H 1.08997 * 109.47365 * 60.00303 * 15 14 12 35 35 H 1.07998 * 119.92374 * 359.97033 * 17 16 15 36 36 H 1.07994 * 119.96566 * 180.27158 * 18 17 16 37 37 H 1.08002 * 120.03569 * 179.70826 * 19 18 17 38 38 H 1.08998 * 109.47444 * 89.99329 * 22 21 20 39 39 H 1.09002 * 109.47063 * 210.00197 * 22 21 20 40 40 H 1.09000 * 109.46512 * 329.99214 * 22 21 20 41 41 H 1.08995 * 109.46934 * 60.00141 * 24 23 21 42 42 H 1.08997 * 109.46625 * 180.02562 * 24 23 21 43 43 H 1.08994 * 109.46781 * 300.00083 * 24 23 21 44 44 H 1.08002 * 120.03063 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.8281 -2.5201 -4.0080 10 1 1.8280 -0.4196 -5.2204 11 1 3.8076 -1.1193 -4.0076 12 6 2.0323 -0.7103 1.2306 13 8 2.7295 -1.6964 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 2.1945 -0.9406 3.6508 16 6 1.6928 -0.2297 4.8812 17 6 2.4444 0.7835 5.4483 18 6 1.9851 1.4422 6.5739 19 6 0.7787 1.0825 7.1424 20 6 0.0241 0.0617 6.5787 21 7 -1.1959 -0.3049 7.1513 22 6 -2.4257 -0.2428 6.3576 23 16 -1.2523 -0.8100 8.7274 24 6 -1.6963 0.6787 9.6642 25 8 -2.3155 -1.7524 8.7556 26 8 0.0822 -1.2022 9.0177 27 6 0.4859 -0.5942 5.4444 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.7089 1.1610 -3.4845 32 1 1.1487 0.5387 2.5435 33 1 1.8308 -1.9681 3.6508 34 1 3.2845 -0.9410 3.6510 35 1 3.3903 1.0634 5.0086 36 1 2.5723 2.2358 7.0117 37 1 0.4228 1.5942 8.0243 38 1 -2.5826 -1.1973 5.8552 39 1 -3.2711 -0.0339 7.0132 40 1 -2.3384 0.5493 5.6139 41 1 -2.6621 1.0494 9.3209 42 1 -1.7561 0.4359 10.7251 43 1 -0.9370 1.4452 9.5094 44 1 -0.0986 -1.3881 5.0033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890857763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:07 Heat of formation + Delta-G solvation = -75.165226 kcal Electronic energy + Delta-G solvation = -27105.665196 eV Core-core repulsion = 23150.530211 eV Total energy + Delta-G solvation = -3955.134985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.05550 -38.66970 -37.57170 -36.55347 -36.29015 -34.23732 -33.70486 -31.47866 -30.43042 -30.09772 -29.97455 -26.74982 -25.94778 -25.10917 -22.58142 -22.56779 -21.61867 -19.50850 -19.22946 -18.10569 -17.34255 -16.94991 -16.39906 -16.29267 -16.02758 -15.65328 -15.38215 -15.09435 -14.47411 -14.38235 -14.11398 -13.97337 -13.82959 -13.63114 -13.34485 -13.06239 -12.94287 -12.71844 -12.63187 -12.50337 -12.30901 -12.26231 -12.13467 -11.63671 -11.48808 -11.44825 -11.33438 -10.98676 -10.72193 -10.67709 -10.23822 -10.09741 -9.94871 -9.20161 -8.96913 -8.71688 -8.51436 -8.43966 -8.28190 -6.01709 -4.04652 -0.29792 1.00148 1.13442 2.05558 3.33461 3.37672 3.39832 3.40371 3.46163 3.63937 3.75342 4.12213 4.15708 4.29793 4.42719 4.49793 4.55335 4.68616 4.82565 4.99347 5.08416 5.13371 5.16675 5.26681 5.31648 5.41423 5.48364 5.64478 5.74347 5.89693 6.08475 6.15480 6.23554 6.30520 6.48189 6.62950 6.79738 6.84026 6.93896 7.06821 7.49091 7.77085 8.00632 8.16569 8.46675 9.04264 9.25564 9.60876 11.05869 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022930 B = 0.002255 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.801207 B =12414.612597 C =12822.762602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.052 0.948 4 C -0.501 4.501 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.519 3.481 13 O -0.546 6.546 14 N -0.743 5.743 15 C 0.158 3.842 16 C -0.079 4.079 17 C -0.104 4.104 18 C -0.099 4.099 19 C -0.134 4.134 20 C 0.150 3.850 21 N -0.952 5.952 22 C 0.089 3.911 23 S 2.602 3.398 24 C -0.674 4.674 25 O -0.948 6.948 26 O -0.938 6.938 27 C -0.101 4.101 28 H 0.031 0.969 29 H 0.011 0.989 30 H 0.093 0.907 31 H 0.261 0.739 32 H 0.397 0.603 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.093 5.781 25.713 27.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.070 0.930 4 C -0.539 4.539 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.309 3.691 13 O -0.421 6.421 14 N -0.397 5.397 15 C 0.034 3.966 16 C -0.080 4.080 17 C -0.123 4.123 18 C -0.117 4.117 19 C -0.155 4.155 20 C 0.057 3.943 21 N -0.782 5.782 22 C -0.055 4.055 23 S 2.696 3.304 24 C -0.824 4.824 25 O -0.938 6.938 26 O -0.929 6.929 27 C -0.122 4.122 28 H 0.050 0.950 29 H 0.030 0.970 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.230 0.770 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.575 4.260 25.792 26.955 hybrid contribution -0.284 0.753 -0.594 1.001 sum -6.859 5.013 25.197 26.591 Atomic orbital electron populations 1.21739 0.96584 0.99779 1.00867 1.18861 0.94111 0.96809 0.89275 0.93027 1.21113 1.30970 1.12806 0.89018 0.90838 1.24949 0.95129 0.95077 0.99104 1.69860 1.37125 1.23128 1.23603 0.86506 0.79286 0.79718 0.81612 1.20204 1.21419 1.20201 1.22011 0.78447 0.84285 0.84360 1.90536 1.37995 1.26909 1.86699 1.46349 1.55631 1.32720 1.05049 1.20087 0.99254 0.95618 0.81623 1.19934 0.94355 0.96833 0.96853 1.21200 1.00093 0.95331 0.95656 1.20943 0.95270 0.99701 0.95832 1.21105 0.96817 0.96321 1.01282 1.17174 0.85798 0.95284 0.96044 1.55306 1.11439 1.82107 1.29389 1.21660 0.83279 1.03794 0.96782 1.05347 0.74741 0.76635 0.73670 1.30623 1.12853 1.23182 1.15714 1.93635 1.57894 1.56971 1.85297 1.93655 1.35761 1.80355 1.83100 1.21118 0.95730 0.99303 0.96099 0.95024 0.96977 0.88873 0.92940 0.76967 0.91168 0.90969 0.85214 0.85226 0.86378 0.91333 0.90691 0.90065 0.85171 0.85093 0.85186 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.87 37.16 0.33 -2.65 16 2 C 0.03 0.75 2.64 -92.92 -0.25 0.51 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -14.19 8.37 -34.44 -0.29 -14.47 16 5 H 0.07 2.20 6.75 -52.49 -0.35 1.85 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.09 11.32 55.43 0.63 -24.46 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.52 11.70 7.15 -10.99 -0.08 11.62 16 13 O -0.55 -14.19 15.46 5.56 0.09 -14.11 16 14 N -0.74 -12.62 5.44 -61.48 -0.33 -12.95 16 15 C 0.16 2.32 5.80 -5.20 -0.03 2.28 16 16 C -0.08 -0.94 5.25 -104.65 -0.55 -1.49 16 17 C -0.10 -1.08 9.70 -39.54 -0.38 -1.46 16 18 C -0.10 -0.87 10.04 -39.61 -0.40 -1.27 16 19 C -0.13 -1.18 9.26 -39.38 -0.36 -1.55 16 20 C 0.15 1.52 4.82 -83.79 -0.40 1.12 16 21 N -0.95 -7.99 3.18 -65.40 -0.21 -8.20 16 22 C 0.09 0.58 9.96 59.85 0.60 1.18 16 23 S 2.60 21.69 5.73 -107.50 -0.62 21.08 16 24 C -0.67 -2.48 10.99 101.05 1.11 -1.37 16 25 O -0.95 -10.65 17.31 -57.54 -1.00 -11.65 16 26 O -0.94 -11.27 16.83 -57.54 -0.97 -12.24 16 27 C -0.10 -1.16 9.32 -39.38 -0.37 -1.53 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 30 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.40 5.92 7.88 -40.82 -0.32 5.60 16 33 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 34 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.69 6.62 -52.49 -0.35 0.34 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.31 7.94 -51.93 -0.41 -0.10 16 40 H 0.08 0.47 8.05 -51.93 -0.42 0.05 16 41 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.13 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.13 0.33 6.71 -51.93 -0.35 -0.02 16 44 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -36.72 380.53 -9.13 -45.85 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.27 Total: 1.69 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -1.17 Total: -7.58 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.09 Total: -45.61 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -1.88 Total: -37.99 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 21.69 SS G_CDS: -0.62 Total: 21.08 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.72 -9.13 -45.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890857763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.318 kcal (2) G-P(sol) polarization free energy of solvation -36.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds