Wall clock time and date at job start Wed Apr 1 2020 00:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47820 * 2 1 4 4 C 1.53003 * 109.46949 * 120.00220 * 2 1 3 5 5 C 1.52996 * 109.47301 * 184.99469 * 4 2 1 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 4 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 S 1.81000 * 109.47389 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99715 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00516 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99710 * 179.97438 * 11 10 9 14 14 N 1.31634 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00011 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46661 * 60.00586 * 15 13 11 17 17 H 1.48501 * 109.47391 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47355 * 300.00441 * 15 13 11 19 19 N 1.46503 * 109.46962 * 239.99625 * 2 1 3 20 20 C 1.34775 * 119.99699 * 85.00331 * 19 2 1 21 21 O 1.21281 * 120.00101 * 0.02562 * 20 19 2 22 22 C 1.50703 * 120.00148 * 180.02562 * 20 19 2 23 23 C 1.50703 * 109.47319 * 180.02562 * 22 20 19 24 24 C 1.34514 * 125.78772 * 89.71152 * 23 22 20 25 25 C 1.41390 * 106.83732 * 179.89118 * 24 23 22 26 26 C 1.34507 * 106.83921 * 0.37356 * 25 24 23 27 27 O 1.34300 * 125.78553 * 270.02525 * 23 22 20 28 28 H 1.09003 * 109.46585 * 300.00438 * 1 2 3 29 29 H 1.09008 * 109.46576 * 59.99240 * 1 2 3 30 30 H 1.08992 * 109.47820 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47038 * 64.99479 * 4 2 1 32 32 H 1.09000 * 109.46939 * 305.00131 * 4 2 1 33 33 H 1.09004 * 109.47066 * 60.00027 * 5 4 2 34 34 H 1.08994 * 109.46974 * 300.00175 * 5 4 2 35 35 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 36 36 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 37 37 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 38 38 H 0.96991 * 119.99795 * 179.97438 * 14 13 11 39 39 H 0.97002 * 120.00479 * 265.00508 * 19 2 1 40 40 H 1.09008 * 109.46987 * 300.00114 * 22 20 19 41 41 H 1.08991 * 109.46864 * 59.99809 * 22 20 19 42 42 H 1.07998 * 126.58201 * 0.03259 * 24 23 22 43 43 H 1.08001 * 126.57793 * 180.16761 * 25 24 23 44 44 H 1.08000 * 125.78973 * 179.75110 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6135 1.3137 6 7 4.0530 -1.3037 2.5102 7 6 5.3743 -1.3443 2.7727 8 8 6.1588 -0.8051 2.0212 9 6 5.8771 -2.0595 4.0002 10 16 7.6814 -1.9370 4.0734 11 6 7.9887 -2.8307 5.5604 12 1 7.1649 -3.2530 6.1168 13 6 9.2896 -2.9930 6.0163 14 7 10.2937 -2.4789 5.3380 15 14 9.6154 -3.9399 7.5932 16 1 9.1095 -5.3288 7.4500 17 1 11.0759 -3.9697 7.8601 18 1 8.9197 -3.2738 8.7234 19 7 2.0183 -0.6907 -1.1962 20 6 2.1471 -0.0184 -2.3571 21 8 1.8591 1.1585 -2.4115 22 6 2.6488 -0.7289 -3.5878 23 6 2.7002 0.2396 -4.7412 24 6 3.7503 1.0118 -5.0737 25 6 3.3663 1.7572 -6.2122 26 6 2.1018 1.4019 -6.5022 27 8 1.7034 0.4824 -5.6079 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0275 0.0005 31 1 1.7515 -1.7716 1.2056 32 1 1.6053 -0.2618 2.1370 33 1 3.8532 0.4367 1.3574 34 1 3.9993 -1.0730 0.4260 35 1 3.4256 -1.7352 3.1112 36 1 5.4457 -1.6011 4.8901 37 1 5.5853 -3.1088 3.9543 38 1 11.2027 -2.5920 5.6568 39 1 2.2490 -1.6319 -1.1526 40 1 3.6480 -1.1216 -3.3986 41 1 1.9759 -1.5506 -3.8325 42 1 4.7044 1.0527 -4.5694 43 1 3.9710 2.4764 -6.7446 44 1 1.5074 1.7904 -7.3159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075677244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:23 Heat of formation + Delta-G solvation = -70.594278 kcal Electronic energy + Delta-G solvation = -25591.245590 eV Core-core repulsion = 21636.308816 eV Total energy + Delta-G solvation = -3954.936774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.79743 -40.18887 -39.17044 -36.90383 -34.47638 -33.46584 -32.73589 -32.44405 -31.53807 -30.09126 -28.16523 -27.37910 -25.50839 -23.65665 -22.10841 -21.98355 -21.08040 -20.50399 -20.28446 -17.94900 -17.71033 -17.58657 -16.67328 -16.25861 -16.07179 -15.86655 -15.61306 -15.41333 -14.81899 -14.69525 -14.20296 -14.03882 -13.96084 -13.82548 -13.41823 -13.19007 -13.05245 -12.93018 -12.80037 -12.58543 -12.40399 -12.21263 -12.08070 -11.67461 -11.56809 -11.29394 -11.06301 -11.05194 -10.78244 -10.26370 -10.11091 -9.84406 -9.52576 -9.39853 -9.08053 -8.93053 -8.71483 -8.26055 -6.52057 -6.23061 -3.94032 1.43981 2.28984 2.35235 2.63545 2.97767 2.99526 3.06571 3.22155 3.26211 3.29262 3.65927 4.18971 4.21116 4.37959 4.46012 4.58232 4.65537 4.70555 4.78510 4.91083 5.01047 5.03650 5.05752 5.11968 5.19496 5.27340 5.34476 5.55236 5.58184 5.60168 5.69618 5.70983 5.82192 5.84064 5.86581 5.89818 6.10896 6.13232 6.26513 6.55802 6.87898 7.10188 7.57517 7.65853 7.86892 8.33316 8.57696 9.22023 10.84295 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.001729 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.484268 B =16191.685908 C =17410.541597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.093 0.907 4 C -0.139 4.139 5 C 0.121 3.879 6 N -0.741 5.741 7 C 0.531 3.469 8 O -0.517 6.517 9 C -0.154 4.154 10 S -0.060 6.060 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.726 5.726 20 C 0.516 3.484 21 O -0.526 6.526 22 C -0.062 4.062 23 C 0.002 3.998 24 C -0.193 4.193 25 C -0.212 4.212 26 C -0.040 4.040 27 O -0.174 6.174 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.402 0.598 40 H 0.126 0.874 41 H 0.112 0.888 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.501 2.198 -18.056 28.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.111 0.889 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.395 5.395 7 C 0.317 3.683 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.379 5.379 20 C 0.302 3.698 21 O -0.401 6.401 22 C -0.102 4.102 23 C -0.049 4.049 24 C -0.212 4.212 25 C -0.231 4.231 26 C -0.107 4.107 27 O -0.070 6.070 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.237 0.763 40 H 0.144 0.856 41 H 0.130 0.870 42 H 0.166 0.834 43 H 0.166 0.834 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -21.468 3.866 -19.351 29.159 hybrid contribution -0.695 -1.724 2.132 2.829 sum -22.163 2.142 -17.219 28.147 Atomic orbital electron populations 1.22164 0.94775 1.02274 1.02850 1.20897 0.94155 0.97798 0.83032 0.88868 1.22129 0.95463 1.01947 0.98227 1.21256 0.92584 0.98049 0.88449 1.46003 1.07802 1.58630 1.27102 1.20328 0.81478 0.79739 0.86790 1.90711 1.54968 1.44410 1.48982 1.23533 1.06908 1.02479 0.97508 1.85411 0.92065 1.72554 1.33326 1.22827 0.95424 1.40127 1.10142 0.90971 1.24995 0.95039 0.95650 0.97877 1.70006 0.99395 1.42521 1.38336 0.86222 0.77384 0.79929 0.81948 1.19943 1.20798 1.19939 1.46069 1.68001 1.14199 1.09597 1.20392 0.77732 0.87437 0.84270 1.90757 1.48902 1.15755 1.84736 1.20099 1.05527 0.96453 0.88121 1.21427 0.87270 1.02030 0.94140 1.21596 1.00638 0.99488 0.99476 1.21829 0.96750 1.04532 1.00002 1.23986 0.96655 0.94179 0.95927 1.83969 1.39472 1.49131 1.34468 0.91369 0.91930 0.92309 0.90476 0.89386 0.91549 0.91620 0.76834 0.89225 0.89238 0.92106 0.76314 0.85570 0.86994 0.83396 0.83413 0.78139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.48 37.16 0.35 -0.70 16 2 C 0.15 1.06 2.58 -67.93 -0.17 0.88 16 3 H 0.09 0.89 7.58 -51.93 -0.39 0.50 16 4 C -0.14 -0.87 4.87 -26.73 -0.13 -1.00 16 5 C 0.12 1.25 5.56 -4.04 -0.02 1.22 16 6 N -0.74 -8.97 5.56 -60.30 -0.33 -9.31 16 7 C 0.53 9.55 7.85 -10.98 -0.09 9.47 16 8 O -0.52 -11.56 15.86 5.55 0.09 -11.47 16 9 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 10 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 11 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 12 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.01 13.22 55.49 0.73 -25.27 16 15 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 19 N -0.73 -4.92 4.53 -53.80 -0.24 -5.17 16 20 C 0.52 4.83 7.79 -10.98 -0.09 4.74 16 21 O -0.53 -7.29 15.70 5.56 0.09 -7.20 16 22 C -0.06 -0.43 6.23 -29.03 -0.18 -0.61 16 23 C 0.00 0.02 5.81 -35.62 -0.21 -0.19 16 24 C -0.19 -1.98 10.81 -39.70 -0.43 -2.41 16 25 C -0.21 -1.95 10.91 -39.70 -0.43 -2.38 16 26 C -0.04 -0.34 12.09 29.41 0.36 0.02 16 27 O -0.17 -1.85 10.65 5.70 0.06 -1.79 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.72 7.75 -51.93 -0.40 0.32 16 35 H 0.40 3.54 8.47 -40.82 -0.35 3.20 16 36 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 37 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.40 1.70 8.60 -40.82 -0.35 1.35 16 40 H 0.13 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.20 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 396.20 15.07 5.97 5.97 Total: -1.00 -38.95 396.20 -8.03 -46.98 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.53 Total: 1.52 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -0.62 Total: -6.61 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.16 Total: -39.75 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: 0.24 Total: -20.46 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.95 -8.03 -46.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075677244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.615 kcal (2) G-P(sol) polarization free energy of solvation -38.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds