Wall clock time and date at job start Wed Apr 1 2020 00:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47820 * 2 1 4 4 C 1.53003 * 109.46949 * 120.00220 * 2 1 3 5 5 C 1.52996 * 109.47301 * 184.99469 * 4 2 1 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 4 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 S 1.81000 * 109.47389 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99715 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00516 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99710 * 179.97438 * 11 10 9 14 14 N 1.31634 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00011 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46661 * 60.00586 * 15 13 11 17 17 H 1.48501 * 109.47391 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47355 * 300.00441 * 15 13 11 19 19 N 1.46503 * 109.46962 * 239.99625 * 2 1 3 20 20 C 1.34775 * 119.99699 * 85.00331 * 19 2 1 21 21 O 1.21281 * 120.00101 * 0.02562 * 20 19 2 22 22 C 1.50703 * 120.00148 * 180.02562 * 20 19 2 23 23 C 1.50703 * 109.47319 * 180.02562 * 22 20 19 24 24 C 1.34514 * 125.78772 * 89.71152 * 23 22 20 25 25 C 1.41390 * 106.83732 * 179.89118 * 24 23 22 26 26 C 1.34507 * 106.83921 * 0.37356 * 25 24 23 27 27 O 1.34300 * 125.78553 * 270.02525 * 23 22 20 28 28 H 1.09003 * 109.46585 * 300.00438 * 1 2 3 29 29 H 1.09008 * 109.46576 * 59.99240 * 1 2 3 30 30 H 1.08992 * 109.47820 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47038 * 64.99479 * 4 2 1 32 32 H 1.09000 * 109.46939 * 305.00131 * 4 2 1 33 33 H 1.09004 * 109.47066 * 60.00027 * 5 4 2 34 34 H 1.08994 * 109.46974 * 300.00175 * 5 4 2 35 35 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 36 36 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 37 37 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 38 38 H 0.96991 * 119.99795 * 179.97438 * 14 13 11 39 39 H 0.97002 * 120.00479 * 265.00508 * 19 2 1 40 40 H 1.09008 * 109.46987 * 300.00114 * 22 20 19 41 41 H 1.08991 * 109.46864 * 59.99809 * 22 20 19 42 42 H 1.07998 * 126.58201 * 0.03259 * 24 23 22 43 43 H 1.08001 * 126.57793 * 180.16761 * 25 24 23 44 44 H 1.08000 * 125.78973 * 179.75110 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6135 1.3137 6 7 4.0530 -1.3037 2.5102 7 6 5.3743 -1.3443 2.7727 8 8 6.1588 -0.8051 2.0212 9 6 5.8771 -2.0595 4.0002 10 16 7.6814 -1.9370 4.0734 11 6 7.9887 -2.8307 5.5604 12 1 7.1649 -3.2530 6.1168 13 6 9.2896 -2.9930 6.0163 14 7 10.2937 -2.4789 5.3380 15 14 9.6154 -3.9399 7.5932 16 1 9.1095 -5.3288 7.4500 17 1 11.0759 -3.9697 7.8601 18 1 8.9197 -3.2738 8.7234 19 7 2.0183 -0.6907 -1.1962 20 6 2.1471 -0.0184 -2.3571 21 8 1.8591 1.1585 -2.4115 22 6 2.6488 -0.7289 -3.5878 23 6 2.7002 0.2396 -4.7412 24 6 3.7503 1.0118 -5.0737 25 6 3.3663 1.7572 -6.2122 26 6 2.1018 1.4019 -6.5022 27 8 1.7034 0.4824 -5.6079 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0275 0.0005 31 1 1.7515 -1.7716 1.2056 32 1 1.6053 -0.2618 2.1370 33 1 3.8532 0.4367 1.3574 34 1 3.9993 -1.0730 0.4260 35 1 3.4256 -1.7352 3.1112 36 1 5.4457 -1.6011 4.8901 37 1 5.5853 -3.1088 3.9543 38 1 11.2027 -2.5920 5.6568 39 1 2.2490 -1.6319 -1.1526 40 1 3.6480 -1.1216 -3.3986 41 1 1.9759 -1.5506 -3.8325 42 1 4.7044 1.0527 -4.5694 43 1 3.9710 2.4764 -6.7446 44 1 1.5074 1.7904 -7.3159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075677244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:23 Heat of formation + Delta-G solvation = -99.744648 kcal Electronic energy + Delta-G solvation = -25592.509645 eV Core-core repulsion = 21636.308816 eV Total energy + Delta-G solvation = -3956.200829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.49277 -40.95965 -40.48426 -37.71631 -35.57674 -34.57229 -34.17693 -33.44797 -32.34072 -31.22746 -29.20314 -28.01359 -27.63814 -24.48328 -22.81120 -22.68161 -21.92477 -21.49380 -21.14061 -19.82659 -18.48507 -18.26533 -17.75837 -17.33738 -17.14917 -16.86598 -16.65809 -16.60368 -16.32719 -15.78133 -15.49087 -15.01393 -14.82507 -14.73959 -14.47743 -14.42470 -13.97549 -13.76776 -13.58014 -13.52973 -13.47801 -13.15832 -12.97483 -12.85705 -12.69030 -12.65331 -12.41933 -12.38074 -11.91956 -11.72821 -11.11769 -11.05531 -10.94859 -10.83972 -10.26230 -10.19312 -10.04634 -9.40164 -8.65744 -8.33434 -6.11686 0.74671 1.28380 1.44935 1.48413 1.57872 1.59231 1.63242 1.65897 2.01711 2.26875 2.31139 2.37211 3.00688 3.33293 3.60297 3.73787 3.81795 3.95998 4.06152 4.11175 4.12682 4.15684 4.32761 4.36243 4.44279 4.47616 4.49672 4.53530 4.64199 4.81714 4.90619 4.91925 4.99946 5.04491 5.13927 5.21753 5.31641 5.42668 5.45223 5.53132 5.58917 6.17970 6.20658 6.52009 6.54792 7.07780 7.23725 7.27893 8.75457 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.001729 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.484268 B =16191.685908 C =17410.541597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.064 0.936 4 C -0.121 4.121 5 C 0.119 3.881 6 N -0.710 5.710 7 C 0.531 3.469 8 O -0.569 6.569 9 C -0.129 4.129 10 S -0.156 6.156 11 C -0.547 4.547 12 H 0.084 0.916 13 C 0.013 3.987 14 N -0.912 5.912 15 Si 0.998 3.002 16 H -0.261 1.261 17 H -0.280 1.280 18 H -0.262 1.262 19 N -0.712 5.712 20 C 0.513 3.487 21 O -0.580 6.580 22 C -0.059 4.059 23 C -0.013 4.013 24 C -0.219 4.219 25 C -0.231 4.231 26 C -0.042 4.042 27 O -0.190 6.190 28 H 0.079 0.921 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.419 0.581 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.271 0.729 39 H 0.418 0.582 40 H 0.148 0.852 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.164 0.836 44 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.992 0.111 -16.896 30.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.040 3.960 3 H 0.082 0.918 4 C -0.159 4.159 5 C -0.005 4.005 6 N -0.364 5.364 7 C 0.317 3.683 8 O -0.447 6.447 9 C -0.280 4.280 10 S 0.071 5.929 11 C -0.694 4.694 12 H 0.102 0.898 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.820 3.180 16 H -0.185 1.185 17 H -0.206 1.206 18 H -0.187 1.187 19 N -0.366 5.366 20 C 0.300 3.700 21 O -0.459 6.459 22 C -0.098 4.098 23 C -0.064 4.064 24 C -0.238 4.238 25 C -0.250 4.250 26 C -0.108 4.108 27 O -0.087 6.087 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.257 0.743 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.080 0.920 39 H 0.255 0.745 40 H 0.166 0.834 41 H 0.159 0.841 42 H 0.167 0.833 43 H 0.181 0.819 44 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -24.026 1.727 -18.168 30.171 hybrid contribution -0.032 -1.017 1.700 1.982 sum -24.058 0.709 -16.468 29.163 Atomic orbital electron populations 1.22089 0.93640 1.03307 1.02265 1.20866 0.94922 0.96631 0.83558 0.91777 1.22032 0.91848 1.03823 0.98203 1.21383 0.95462 0.96369 0.87247 1.45695 1.05931 1.57207 1.27605 1.20103 0.83034 0.79308 0.85864 1.90703 1.56782 1.46796 1.50464 1.23376 1.00822 1.04491 0.99344 1.85619 0.99872 1.73218 1.34160 1.23183 0.96169 1.39957 1.10126 0.89761 1.26138 0.94708 0.96574 1.01781 1.70181 0.99901 1.44219 1.40524 0.85003 0.77311 0.78678 0.77002 1.18524 1.20553 1.18690 1.45997 1.66887 1.14846 1.08842 1.20823 0.76933 0.86889 0.85380 1.90734 1.51442 1.18085 1.85623 1.20249 1.07379 0.96226 0.85945 1.21955 0.87047 1.02582 0.94773 1.21879 1.01179 1.00383 1.00407 1.22157 0.97569 1.05145 1.00133 1.24731 0.96866 0.93219 0.96032 1.83966 1.39951 1.49760 1.35003 0.90243 0.94297 0.90360 0.87469 0.87676 0.93839 0.92051 0.74323 0.87215 0.86876 0.92037 0.74450 0.83428 0.84066 0.83319 0.81857 0.74670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.48 71.98 0.68 -1.00 16 2 C 0.15 1.88 2.58 44.99 0.12 1.99 16 3 H 0.06 1.24 7.58 -2.39 -0.02 1.23 16 4 C -0.12 -1.10 4.87 30.59 0.15 -0.95 16 5 C 0.12 2.24 5.56 86.38 0.48 2.72 16 6 N -0.71 -15.30 5.56 -463.07 -2.57 -17.88 16 7 C 0.53 18.54 7.85 87.66 0.69 19.23 16 8 O -0.57 -25.89 15.86 -3.04 -0.05 -25.93 16 9 C -0.13 -4.87 6.16 71.24 0.44 -4.43 16 10 S -0.16 -8.53 20.57 -56.49 -1.16 -9.70 16 11 C -0.55 -30.74 9.50 67.96 0.65 -30.09 16 12 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 13 C 0.01 0.72 5.49 84.86 0.47 1.18 16 14 N -0.91 -55.74 13.22 21.65 0.29 -55.46 16 15 Si 1.00 42.94 29.55 68.60 2.03 44.97 16 16 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 19 N -0.71 -8.59 4.53 -442.53 -2.00 -10.59 16 20 C 0.51 9.45 7.79 87.66 0.68 10.13 16 21 O -0.58 -16.72 15.70 -3.03 -0.05 -16.76 16 22 C -0.06 -0.76 6.23 29.10 0.18 -0.58 16 23 C -0.01 -0.27 5.81 24.83 0.14 -0.13 16 24 C -0.22 -4.68 10.81 22.19 0.24 -4.44 16 25 C -0.23 -4.30 10.91 22.19 0.24 -4.06 16 26 C -0.04 -0.69 12.09 66.97 0.81 0.12 16 27 O -0.19 -4.02 10.65 -2.54 -0.03 -4.04 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.11 0.44 8.14 -2.38 -0.02 0.43 16 32 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.06 1.25 7.75 -2.39 -0.02 1.23 16 35 H 0.42 5.66 8.47 -92.71 -0.79 4.87 16 36 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 37 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 38 H 0.27 15.41 8.31 -92.72 -0.77 14.64 16 39 H 0.42 2.38 8.60 -92.71 -0.80 1.58 16 40 H 0.15 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 43 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 44 H 0.24 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -90.19 396.20 1.86 -88.33 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -0.56 Total: 17.37 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 5.97 Total: -10.31 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -4.29 Total: -83.92 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -0.12 Total: -46.74 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.70 kcal Total: -90.19 1.86 -88.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075677244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.418 kcal (2) G-P(sol) polarization free energy of solvation -90.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds