Wall clock time and date at job start Wed Apr 1 2020 00:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 C 1.53007 * 109.46692 * 119.99835 * 2 1 3 5 5 C 1.53002 * 109.46697 * 184.99887 * 4 2 1 6 6 N 1.46501 * 109.46773 * 179.97438 * 5 4 2 7 7 C 1.34776 * 120.00049 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00115 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00220 * 180.02562 * 7 6 5 10 10 C 1.50696 * 109.47188 * 180.02562 * 9 7 6 11 11 C 1.41385 * 126.57985 * 90.00436 * 10 9 7 12 12 C 1.34507 * 106.84104 * 179.73601 * 11 10 9 13 13 O 1.34300 * 108.42410 * 359.97438 * 12 11 10 14 14 C 1.34307 * 109.47608 * 359.97438 * 13 12 11 15 15 N 1.46493 * 109.47153 * 239.99468 * 2 1 3 16 16 C 1.34781 * 119.99823 * 85.00972 * 15 2 1 17 17 O 1.21283 * 119.99921 * 359.97438 * 16 15 2 18 18 C 1.50700 * 119.99865 * 180.02562 * 16 15 2 19 19 S 1.81001 * 109.46672 * 179.97438 * 18 16 15 20 20 C 1.76204 * 99.99977 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99867 * 359.97438 * 20 19 18 22 22 C 1.38790 * 120.00202 * 179.97438 * 20 19 18 23 23 N 1.31640 * 120.00127 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00298 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47144 * 89.99933 * 24 22 20 26 26 H 1.48501 * 109.47475 * 210.00088 * 24 22 20 27 27 H 1.48504 * 109.46916 * 330.00033 * 24 22 20 28 28 H 1.08999 * 109.47068 * 300.00617 * 1 2 3 29 29 H 1.09004 * 109.46554 * 59.99884 * 1 2 3 30 30 H 1.08998 * 109.47339 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46988 * 64.99988 * 4 2 1 32 32 H 1.08995 * 109.47040 * 304.99665 * 4 2 1 33 33 H 1.08994 * 109.47320 * 60.00304 * 5 4 2 34 34 H 1.08995 * 109.47194 * 299.99684 * 5 4 2 35 35 H 0.97005 * 120.00314 * 0.02562 * 6 5 4 36 36 H 1.09002 * 109.46441 * 60.00533 * 9 7 6 37 37 H 1.09003 * 109.47207 * 300.01260 * 9 7 6 38 38 H 1.08003 * 126.57418 * 359.76478 * 11 10 9 39 39 H 1.08001 * 125.78820 * 179.97438 * 12 11 10 40 40 H 1.07996 * 125.79095 * 179.97438 * 14 13 12 41 41 H 0.97000 * 120.00817 * 264.99994 * 15 2 1 42 42 H 1.08996 * 109.46972 * 299.98916 * 18 16 15 43 43 H 1.08998 * 109.47672 * 59.99612 * 18 16 15 44 44 H 0.97002 * 119.99779 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2494 5 6 3.5648 -0.6133 1.3138 6 7 4.0530 -1.3034 2.5103 7 6 5.3739 -1.3396 2.7756 8 8 6.1583 -0.8005 2.0240 9 6 5.8762 -2.0499 4.0062 10 6 7.3780 -1.9435 4.0697 11 6 8.1244 -0.9211 4.6994 12 6 9.4235 -1.2201 4.5202 13 8 9.5032 -2.3633 3.8198 14 6 8.2658 -2.8070 3.5447 15 7 2.0183 -0.6907 -1.1960 16 6 2.1472 -0.0183 -2.3570 17 8 1.8585 1.1584 -2.4116 18 6 2.6490 -0.7290 -3.5876 19 16 2.7095 0.4340 -4.9732 20 6 3.3128 -0.6313 -6.2406 21 1 3.5228 -1.6675 -6.0204 22 6 3.5182 -0.1387 -7.5218 23 7 3.9684 -0.9346 -8.4687 24 14 3.1557 1.6538 -7.9025 25 1 4.3748 2.4672 -7.6625 26 1 2.7451 1.7849 -9.3236 27 1 2.0591 2.1345 -7.0241 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.7515 -1.7714 1.2057 32 1 1.6053 -0.2617 2.1370 33 1 3.8532 0.4369 1.3574 34 1 3.9994 -1.0729 0.4261 35 1 3.4256 -1.7349 3.1113 36 1 5.5875 -3.1001 3.9626 37 1 5.4416 -1.5902 4.8939 38 1 7.7274 -0.0645 5.2241 39 1 10.2605 -0.6394 4.8786 40 1 8.0244 -3.7041 2.9939 41 1 2.2490 -1.6318 -1.1525 42 1 3.6481 -1.1215 -3.3984 43 1 1.9761 -1.5507 -3.8325 44 1 4.1123 -0.5902 -9.3640 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076249287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:53 Heat of formation + Delta-G solvation = -70.924984 kcal Electronic energy + Delta-G solvation = -25676.559211 eV Core-core repulsion = 21721.608096 eV Total energy + Delta-G solvation = -3954.951115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.82580 -40.01023 -39.44389 -36.73317 -34.72598 -34.28731 -32.42184 -31.98178 -30.86499 -29.60540 -28.63252 -27.80464 -25.59652 -23.82888 -21.90407 -21.69352 -21.36557 -20.46057 -20.24836 -17.94452 -17.81297 -17.34202 -16.71193 -16.33058 -16.06450 -16.01001 -15.73028 -15.07402 -14.96357 -14.91142 -14.55249 -14.03828 -13.90867 -13.62530 -13.39754 -13.21629 -13.06584 -13.02302 -12.78890 -12.77839 -12.27544 -12.05942 -12.00713 -11.72173 -11.59501 -11.24807 -11.15724 -10.98950 -10.58335 -10.32805 -9.86631 -9.83927 -9.50580 -9.40046 -9.02914 -8.96780 -8.81790 -8.48380 -6.89747 -6.27142 -3.98701 1.49795 2.20761 2.37874 2.77475 2.86014 2.97849 2.98581 3.31062 3.35866 3.51939 3.66414 4.33190 4.34847 4.40671 4.43266 4.49366 4.63327 4.68119 4.74485 4.78609 4.99571 5.07067 5.11883 5.16775 5.20738 5.28604 5.33381 5.37742 5.52308 5.58418 5.66805 5.71731 5.78214 5.85893 5.91729 6.03111 6.08151 6.10568 6.17345 6.56022 6.82330 7.15519 7.59988 7.95599 7.95980 8.43464 8.49686 9.19083 10.82101 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011184 B = 0.002084 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.938936 B =13433.701976 C =15312.369179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.116 3.884 6 N -0.734 5.734 7 C 0.508 3.492 8 O -0.524 6.524 9 C -0.069 4.069 10 C -0.168 4.168 11 C -0.200 4.200 12 C -0.042 4.042 13 O -0.176 6.176 14 C -0.024 4.024 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.125 4.125 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.399 0.601 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.146 0.854 39 H 0.202 0.798 40 H 0.200 0.800 41 H 0.398 0.602 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.168 -5.580 32.307 32.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.007 4.007 6 N -0.388 5.388 7 C 0.294 3.706 8 O -0.399 6.399 9 C -0.109 4.109 10 C -0.170 4.170 11 C -0.220 4.220 12 C -0.110 4.110 13 O -0.071 6.071 14 C -0.092 4.092 15 N -0.388 5.388 16 C 0.319 3.681 17 O -0.393 6.393 18 C -0.276 4.276 19 S 0.085 5.915 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.233 0.767 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.163 0.837 39 H 0.218 0.782 40 H 0.217 0.783 41 H 0.232 0.768 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.590 -3.364 31.374 31.560 hybrid contribution -0.128 -1.264 -0.035 1.271 sum 0.462 -4.628 31.339 31.682 Atomic orbital electron populations 1.22173 0.94948 1.02166 1.02831 1.20791 0.94185 0.97730 0.83194 0.89083 1.22104 0.94631 1.02061 0.98719 1.21400 0.93494 0.98036 0.87761 1.46022 1.07533 1.57845 1.27357 1.20656 0.82060 0.80654 0.87261 1.90779 1.55173 1.44636 1.49262 1.19975 0.91638 1.02162 0.97084 1.19761 0.94865 0.97489 1.04861 1.21651 0.93143 1.01355 1.05804 1.23976 0.98970 0.88473 0.99559 1.84075 1.30886 1.34803 1.57351 1.23808 0.80823 1.01398 1.03204 1.46087 1.69299 1.13946 1.09517 1.20273 0.76786 0.87216 0.83851 1.90697 1.48399 1.15731 1.84435 1.23286 1.04481 1.03468 0.96319 1.84779 1.87140 1.16891 1.02733 1.22317 1.50384 0.98788 0.95341 0.89400 1.24719 0.93380 0.98300 0.94967 1.69945 1.43426 1.35800 1.02559 0.86729 0.81124 0.84861 0.79100 1.19197 1.19960 1.15934 0.91829 0.91477 0.92456 0.90565 0.89724 0.91215 0.90922 0.76703 0.88032 0.87954 0.83659 0.78174 0.78320 0.76765 0.88522 0.88502 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 2 C 0.15 1.44 2.57 -67.93 -0.17 1.26 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 4 C -0.14 -0.84 4.87 -26.73 -0.13 -0.97 16 5 C 0.12 1.00 5.56 -4.04 -0.02 0.98 16 6 N -0.73 -4.96 5.56 -60.30 -0.33 -5.29 16 7 C 0.51 4.83 7.82 -10.98 -0.09 4.74 16 8 O -0.52 -7.87 16.03 5.56 0.09 -7.79 16 9 C -0.07 -0.42 6.22 -29.04 -0.18 -0.60 16 10 C -0.17 -1.48 4.66 -104.74 -0.49 -1.97 16 11 C -0.20 -1.75 10.87 -39.70 -0.43 -2.18 16 12 C -0.04 -0.35 12.09 29.41 0.36 0.01 16 13 O -0.18 -1.73 10.65 5.71 0.06 -1.67 16 14 C -0.02 -0.21 12.01 29.42 0.35 0.14 16 15 N -0.73 -8.72 4.53 -53.81 -0.24 -8.96 16 16 C 0.53 9.27 7.81 -10.98 -0.09 9.18 16 17 O -0.52 -10.99 15.52 5.55 0.09 -10.91 16 18 C -0.12 -2.42 6.16 36.01 0.22 -2.20 16 19 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 20 C -0.52 -15.18 10.04 30.94 0.31 -14.87 16 21 H 0.09 2.67 8.03 -52.48 -0.42 2.25 16 22 C 0.09 2.81 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -26.87 13.97 55.49 0.78 -26.09 16 24 Si 0.86 22.08 27.74 -169.99 -4.72 17.36 16 25 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 27 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.77 7.75 -51.93 -0.40 0.37 16 35 H 0.40 1.25 8.47 -40.82 -0.35 0.91 16 36 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.20 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.20 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.40 3.68 8.60 -40.82 -0.35 3.33 16 42 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 43 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 44 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 393.50 15.07 5.93 5.93 Total: -1.00 -39.42 393.50 -7.01 -46.43 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.57 Total: 1.51 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -0.10 Total: -4.90 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.20 Total: -40.34 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: 0.24 Total: -20.36 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.72 Total: 17.36 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.42 -7.01 -46.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076249287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.491 kcal (2) G-P(sol) polarization free energy of solvation -39.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds