Wall clock time and date at job start Wed Apr 1 2020 00:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 C 1.53000 * 109.47152 * 185.00354 * 4 2 1 6 6 N 1.46498 * 109.47226 * 180.02562 * 5 4 2 7 7 C 1.34776 * 120.00351 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99567 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00492 * 179.97438 * 7 6 5 10 10 C 1.50701 * 109.47415 * 179.97438 * 9 7 6 11 11 C 1.34516 * 125.78900 * 89.71418 * 10 9 7 12 12 C 1.41379 * 106.83742 * 179.89182 * 11 10 9 13 13 C 1.34513 * 106.84607 * 0.37077 * 12 11 10 14 14 O 1.34297 * 125.78796 * 270.02210 * 10 9 7 15 15 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 16 16 C 1.34777 * 120.00258 * 85.00009 * 15 2 1 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 2 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 2 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00513 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99570 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47083 * 60.00261 * 24 22 20 26 26 H 1.48506 * 109.46585 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47209 * 299.99712 * 24 22 20 28 28 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 29 29 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 30 30 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47690 * 305.00545 * 4 2 1 32 32 H 1.09003 * 109.47048 * 65.00365 * 4 2 1 33 33 H 1.09004 * 109.46980 * 300.00055 * 5 4 2 34 34 H 1.08995 * 109.47311 * 60.00363 * 5 4 2 35 35 H 0.97007 * 119.99883 * 359.97438 * 6 5 4 36 36 H 1.09004 * 109.47234 * 299.99645 * 9 7 6 37 37 H 1.09003 * 109.47295 * 59.99374 * 9 7 6 38 38 H 1.08002 * 126.58136 * 0.02562 * 11 10 9 39 39 H 1.08000 * 126.57628 * 180.16745 * 12 11 10 40 40 H 1.07993 * 125.79565 * 179.75561 * 13 12 11 41 41 H 0.96999 * 119.99694 * 264.99399 * 15 2 1 42 42 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 43 43 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 44 44 H 0.96995 * 120.00407 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3137 6 7 4.0532 -1.3041 2.5096 7 6 5.3741 -1.3394 2.7753 8 8 6.1583 -0.7996 2.0241 9 6 5.8764 -2.0497 4.0058 10 6 7.3784 -1.9434 4.0692 11 6 8.0727 -0.9595 4.6686 12 6 9.4431 -1.2572 4.4888 13 6 9.5042 -2.4008 3.7832 14 8 8.2505 -2.8119 3.5319 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3571 17 8 1.8582 1.1584 -2.4118 18 6 2.6500 -0.7286 -3.5874 19 16 2.7100 0.4342 -4.9733 20 6 3.3147 -0.6306 -6.2401 21 1 3.5255 -1.6666 -6.0197 22 6 3.5211 -0.1376 -7.5211 23 7 3.2657 1.1255 -7.7894 24 14 4.1629 -1.2664 -8.8641 25 1 3.2133 -2.3910 -9.0612 26 1 4.2963 -0.5027 -10.1307 27 1 5.4899 -1.8026 -8.4679 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6054 -0.2617 2.1370 32 1 1.7517 -1.7714 1.2056 33 1 3.9995 -1.0726 0.4260 34 1 3.8531 0.4372 1.3574 35 1 3.4259 -1.7356 3.1107 36 1 5.4416 -1.5904 4.8935 37 1 5.5884 -3.1001 3.9620 38 1 7.6622 -0.1070 5.1893 39 1 10.2802 -0.6759 4.8463 40 1 10.4080 -2.9030 3.4715 41 1 2.2491 -1.6317 -1.1525 42 1 3.6494 -1.1203 -3.3979 43 1 1.9778 -1.5509 -3.8325 44 1 3.4096 1.4699 -8.6847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077995071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:47 Heat of formation + Delta-G solvation = -69.650761 kcal Electronic energy + Delta-G solvation = -25663.196212 eV Core-core repulsion = 21708.300351 eV Total energy + Delta-G solvation = -3954.895860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.82389 -40.02283 -39.35727 -36.66702 -34.69697 -33.47584 -32.57001 -32.40460 -31.75255 -29.53619 -28.48198 -27.29201 -25.46063 -23.77361 -22.02763 -21.65616 -21.32604 -20.42349 -20.30622 -17.93509 -17.76679 -17.49917 -16.62711 -16.34379 -16.04883 -15.94474 -15.75918 -14.97379 -14.78835 -14.73843 -14.41875 -13.99377 -13.92020 -13.64992 -13.22908 -13.12618 -13.08930 -12.96640 -12.89072 -12.63081 -12.19833 -12.15146 -11.94278 -11.74178 -11.54479 -11.10375 -11.02208 -11.01348 -10.74526 -10.28077 -10.14331 -9.80101 -9.43718 -9.37436 -9.04159 -8.91507 -8.74292 -8.21682 -6.47304 -6.19116 -3.89525 1.41243 2.28422 2.31907 2.61726 2.96148 3.04582 3.10984 3.25557 3.29297 3.32949 3.72355 4.16241 4.22924 4.40344 4.45223 4.59859 4.68345 4.72384 4.72524 4.86124 4.92798 5.15833 5.16413 5.20810 5.29780 5.33184 5.53327 5.54271 5.60049 5.63452 5.67154 5.72944 5.81662 5.91282 5.99338 6.04568 6.15247 6.17420 6.22744 6.65338 6.85477 7.08487 7.61658 7.70620 7.86996 8.37471 8.62760 9.26040 10.88264 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010169 B = 0.002095 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.806853 B =13360.996421 C =15552.699690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.116 3.884 6 N -0.731 5.731 7 C 0.509 3.491 8 O -0.521 6.521 9 C -0.060 4.060 10 C 0.000 4.000 11 C -0.194 4.194 12 C -0.214 4.214 13 C -0.035 4.035 14 O -0.172 6.172 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.400 0.600 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.203 0.797 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.063 -9.866 30.326 31.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.007 4.007 6 N -0.384 5.384 7 C 0.294 3.706 8 O -0.395 6.395 9 C -0.099 4.099 10 C -0.050 4.050 11 C -0.214 4.214 12 C -0.234 4.234 13 C -0.103 4.103 14 O -0.068 6.068 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.234 0.766 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.220 0.780 41 H 0.231 0.769 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.069 -7.584 29.367 30.402 hybrid contribution 0.718 -2.572 -0.425 2.704 sum 2.788 -10.156 28.943 30.799 Atomic orbital electron populations 1.22172 0.94995 1.02094 1.02844 1.20775 0.94168 0.97765 0.83230 0.89070 1.22102 0.94466 1.02080 0.98846 1.21437 0.93631 0.98078 0.87554 1.45954 1.07232 1.57704 1.27510 1.20429 0.82385 0.80745 0.87050 1.90811 1.55119 1.44503 1.49073 1.20066 0.87674 1.03760 0.98429 1.21429 0.91077 0.92011 1.00506 1.21530 0.93411 1.00468 1.05941 1.21817 0.97449 0.98956 1.05135 1.24032 0.85584 0.98154 1.02541 1.83985 1.15765 1.45832 1.61231 1.46127 1.69523 1.13868 1.09580 1.20298 0.76707 0.87213 0.83762 1.90698 1.48211 1.15735 1.84379 1.23541 1.03672 1.04859 0.98431 1.85378 1.86208 1.12982 0.98732 1.22827 1.51029 0.98156 0.96385 0.91002 1.24991 0.95103 0.95539 0.97954 1.70004 1.45514 1.13206 1.21584 0.86228 0.79340 0.80007 0.79950 1.19954 1.20811 1.19935 0.91870 0.91423 0.92536 0.89708 0.90591 0.90811 0.91002 0.76566 0.85869 0.86981 0.83593 0.83400 0.78028 0.76933 0.89245 0.89278 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.48 37.16 0.35 -1.22 16 2 C 0.15 1.51 2.57 -67.94 -0.17 1.33 16 3 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 4 C -0.14 -0.87 4.87 -26.73 -0.13 -1.00 16 5 C 0.12 1.02 5.56 -4.04 -0.02 1.00 16 6 N -0.73 -4.91 5.56 -60.30 -0.33 -5.25 16 7 C 0.51 4.90 7.82 -10.99 -0.09 4.81 16 8 O -0.52 -8.01 16.03 5.56 0.09 -7.92 16 9 C -0.06 -0.37 6.23 -29.04 -0.18 -0.55 16 10 C 0.00 0.00 5.81 -35.62 -0.21 -0.20 16 11 C -0.19 -1.85 10.81 -39.70 -0.43 -2.28 16 12 C -0.21 -1.93 10.91 -39.70 -0.43 -2.36 16 13 C -0.04 -0.31 12.09 29.42 0.36 0.04 16 14 O -0.17 -1.88 10.65 5.71 0.06 -1.82 16 15 N -0.74 -9.26 4.53 -53.81 -0.24 -9.50 16 16 C 0.53 9.82 7.81 -10.98 -0.09 9.74 16 17 O -0.52 -11.57 15.53 5.56 0.09 -11.49 16 18 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.48 9.50 30.94 0.29 -15.19 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 24 Si 0.92 21.72 29.55 -169.99 -5.02 16.70 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.81 7.75 -51.93 -0.40 0.41 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.40 1.15 8.47 -40.82 -0.35 0.80 16 36 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.20 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.40 3.92 8.60 -40.82 -0.35 3.57 16 42 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 43 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 44 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 396.20 15.07 5.97 5.97 Total: -1.00 -40.11 396.20 -8.03 -48.14 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.53 Total: 1.54 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -0.62 Total: -6.77 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.16 Total: -40.51 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: 0.24 Total: -21.22 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -40.11 -8.03 -48.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077995071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.513 kcal (2) G-P(sol) polarization free energy of solvation -40.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds