Wall clock time and date at job start Wed Apr 1 2020 00:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 C 1.53000 * 109.47152 * 185.00354 * 4 2 1 6 6 N 1.46498 * 109.47226 * 180.02562 * 5 4 2 7 7 C 1.34776 * 120.00351 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99567 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00492 * 179.97438 * 7 6 5 10 10 C 1.50701 * 109.47415 * 179.97438 * 9 7 6 11 11 C 1.34516 * 125.78900 * 89.71418 * 10 9 7 12 12 C 1.41379 * 106.83742 * 179.89182 * 11 10 9 13 13 C 1.34513 * 106.84607 * 0.37077 * 12 11 10 14 14 O 1.34297 * 125.78796 * 270.02210 * 10 9 7 15 15 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 16 16 C 1.34777 * 120.00258 * 85.00009 * 15 2 1 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 2 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 2 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00513 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99570 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47083 * 60.00261 * 24 22 20 26 26 H 1.48506 * 109.46585 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47209 * 299.99712 * 24 22 20 28 28 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 29 29 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 30 30 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47690 * 305.00545 * 4 2 1 32 32 H 1.09003 * 109.47048 * 65.00365 * 4 2 1 33 33 H 1.09004 * 109.46980 * 300.00055 * 5 4 2 34 34 H 1.08995 * 109.47311 * 60.00363 * 5 4 2 35 35 H 0.97007 * 119.99883 * 359.97438 * 6 5 4 36 36 H 1.09004 * 109.47234 * 299.99645 * 9 7 6 37 37 H 1.09003 * 109.47295 * 59.99374 * 9 7 6 38 38 H 1.08002 * 126.58136 * 0.02562 * 11 10 9 39 39 H 1.08000 * 126.57628 * 180.16745 * 12 11 10 40 40 H 1.07993 * 125.79565 * 179.75561 * 13 12 11 41 41 H 0.96999 * 119.99694 * 264.99399 * 15 2 1 42 42 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 43 43 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 44 44 H 0.96995 * 120.00407 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3137 6 7 4.0532 -1.3041 2.5096 7 6 5.3741 -1.3394 2.7753 8 8 6.1583 -0.7996 2.0241 9 6 5.8764 -2.0497 4.0058 10 6 7.3784 -1.9434 4.0692 11 6 8.0727 -0.9595 4.6686 12 6 9.4431 -1.2572 4.4888 13 6 9.5042 -2.4008 3.7832 14 8 8.2505 -2.8119 3.5319 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3571 17 8 1.8582 1.1584 -2.4118 18 6 2.6500 -0.7286 -3.5874 19 16 2.7100 0.4342 -4.9733 20 6 3.3147 -0.6306 -6.2401 21 1 3.5255 -1.6666 -6.0197 22 6 3.5211 -0.1376 -7.5211 23 7 3.2657 1.1255 -7.7894 24 14 4.1629 -1.2664 -8.8641 25 1 3.2133 -2.3910 -9.0612 26 1 4.2963 -0.5027 -10.1307 27 1 5.4899 -1.8026 -8.4679 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6054 -0.2617 2.1370 32 1 1.7517 -1.7714 1.2056 33 1 3.9995 -1.0726 0.4260 34 1 3.8531 0.4372 1.3574 35 1 3.4259 -1.7356 3.1107 36 1 5.4416 -1.5904 4.8935 37 1 5.5884 -3.1001 3.9620 38 1 7.6622 -0.1070 5.1893 39 1 10.2802 -0.6759 4.8463 40 1 10.4080 -2.9030 3.4715 41 1 2.2491 -1.6317 -1.1525 42 1 3.6494 -1.1203 -3.3979 43 1 1.9778 -1.5509 -3.8325 44 1 3.4096 1.4699 -8.6847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077995071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:47 Heat of formation + Delta-G solvation = -100.490735 kcal Electronic energy + Delta-G solvation = -25664.533533 eV Core-core repulsion = 21708.300351 eV Total energy + Delta-G solvation = -3956.233182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.48478 -40.94595 -40.53759 -37.68623 -35.62281 -34.60004 -34.14559 -33.31175 -32.82154 -30.51050 -29.73491 -27.89917 -27.67171 -24.53815 -22.69978 -22.54672 -22.11836 -21.58951 -21.06655 -19.84947 -18.52092 -18.20411 -17.93466 -17.34943 -16.90139 -16.87648 -16.67620 -16.64923 -16.35326 -15.97013 -15.40166 -15.04874 -14.81343 -14.71824 -14.53866 -14.36750 -13.98777 -13.75861 -13.71586 -13.55918 -13.31134 -13.18872 -13.01587 -12.87990 -12.71362 -12.61935 -12.42312 -12.37587 -11.90723 -11.74722 -11.14454 -11.11212 -10.91258 -10.83292 -10.29952 -10.20870 -10.05970 -9.39625 -8.68223 -8.35877 -6.14176 0.74780 1.25821 1.42500 1.45499 1.55682 1.58261 1.62883 1.66090 2.03469 2.25480 2.31460 2.34672 2.97871 3.31115 3.60003 3.74827 3.80943 3.98856 4.04997 4.10898 4.13718 4.17658 4.27688 4.38060 4.44445 4.48369 4.49011 4.50458 4.65993 4.83411 4.90643 4.91874 5.00465 5.05177 5.15233 5.22544 5.34804 5.39732 5.39949 5.57179 5.60767 6.18040 6.19224 6.51752 6.54476 7.04970 7.25728 7.27289 8.73160 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010169 B = 0.002095 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.806853 B =13360.996421 C =15552.699690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.140 3.860 3 H 0.062 0.938 4 C -0.116 4.116 5 C 0.117 3.883 6 N -0.708 5.708 7 C 0.505 3.495 8 O -0.589 6.589 9 C -0.051 4.051 10 C -0.019 4.019 11 C -0.214 4.214 12 C -0.232 4.232 13 C -0.047 4.047 14 O -0.194 6.194 15 N -0.710 5.710 16 C 0.534 3.466 17 O -0.565 6.565 18 C -0.131 4.131 19 S -0.152 6.152 20 C -0.548 4.548 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.260 1.260 26 H -0.278 1.278 27 H -0.264 1.264 28 H 0.089 0.911 29 H 0.028 0.972 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.424 0.576 36 H 0.163 0.837 37 H 0.141 0.859 38 H 0.159 0.841 39 H 0.165 0.835 40 H 0.232 0.768 41 H 0.414 0.586 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.370 -12.959 32.555 35.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.035 3.965 3 H 0.080 0.920 4 C -0.154 4.154 5 C -0.007 4.007 6 N -0.362 5.362 7 C 0.292 3.708 8 O -0.468 6.468 9 C -0.090 4.090 10 C -0.069 4.069 11 C -0.233 4.233 12 C -0.251 4.251 13 C -0.114 4.114 14 O -0.091 6.091 15 N -0.364 5.364 16 C 0.320 3.680 17 O -0.443 6.443 18 C -0.283 4.283 19 S 0.075 5.925 20 C -0.696 4.696 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.184 1.184 26 H -0.203 1.203 27 H -0.189 1.189 28 H 0.108 0.892 29 H 0.047 0.953 30 H 0.096 0.904 31 H 0.135 0.865 32 H 0.126 0.874 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.263 0.737 36 H 0.180 0.820 37 H 0.159 0.841 38 H 0.176 0.824 39 H 0.182 0.818 40 H 0.248 0.752 41 H 0.251 0.749 42 H 0.121 0.879 43 H 0.129 0.871 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.325 -10.747 31.685 33.484 hybrid contribution 0.922 -1.606 -0.965 2.088 sum 2.247 -12.353 30.719 33.186 Atomic orbital electron populations 1.22119 0.93811 1.03276 1.02286 1.21010 0.95028 0.96809 0.83616 0.91971 1.21996 0.92151 1.03689 0.97563 1.21281 0.95372 0.96517 0.87566 1.45720 1.06926 1.56606 1.26942 1.21100 0.82562 0.79821 0.87309 1.90789 1.56926 1.47599 1.51532 1.20252 0.85515 1.05356 0.97906 1.22116 0.92672 0.91922 1.00202 1.21897 0.93972 1.01019 1.06455 1.22185 0.98014 0.99428 1.05428 1.24709 0.85962 0.98461 1.02249 1.83973 1.16662 1.46666 1.61774 1.45914 1.67498 1.14514 1.08499 1.20003 0.76660 0.86573 0.84757 1.90685 1.50713 1.17722 1.85195 1.23391 1.05238 1.03293 0.96335 1.85549 1.86598 1.17517 1.02809 1.23169 1.51061 0.98462 0.96868 0.90017 1.26150 0.95061 0.97253 1.00779 1.70175 1.46764 1.15475 1.22321 0.85000 0.79025 0.77780 0.76160 1.18447 1.20269 1.18864 0.89222 0.95264 0.90389 0.86501 0.87436 0.93283 0.93700 0.73722 0.81975 0.84075 0.82375 0.81782 0.75203 0.74865 0.87870 0.87119 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.48 71.98 0.68 -1.99 16 2 C 0.14 2.67 2.57 44.99 0.12 2.78 16 3 H 0.06 1.60 7.58 -2.39 -0.02 1.58 16 4 C -0.12 -1.05 4.87 30.59 0.15 -0.90 16 5 C 0.12 1.88 5.56 86.38 0.48 2.36 16 6 N -0.71 -7.57 5.56 -463.07 -2.57 -10.15 16 7 C 0.50 9.00 7.82 87.66 0.69 9.68 16 8 O -0.59 -18.51 16.03 -3.03 -0.05 -18.56 16 9 C -0.05 -0.50 6.23 29.10 0.18 -0.31 16 10 C -0.02 -0.35 5.81 24.83 0.14 -0.21 16 11 C -0.21 -3.99 10.81 22.19 0.24 -3.75 16 12 C -0.23 -4.10 10.91 22.19 0.24 -3.86 16 13 C -0.05 -0.81 12.09 66.97 0.81 0.00 16 14 O -0.19 -4.17 10.65 -2.49 -0.03 -4.20 16 15 N -0.71 -16.99 4.53 -442.54 -2.00 -18.99 16 16 C 0.53 19.90 7.81 87.66 0.68 20.59 16 17 O -0.56 -26.50 15.53 -3.03 -0.05 -26.54 16 18 C -0.13 -5.36 6.16 71.24 0.44 -4.92 16 19 S -0.15 -8.67 20.57 -56.49 -1.16 -9.83 16 20 C -0.55 -32.07 9.50 67.96 0.65 -31.42 16 21 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 22 C 0.01 0.72 5.49 84.86 0.47 1.18 16 23 N -0.91 -57.09 13.22 21.65 0.29 -56.80 16 24 Si 1.00 44.53 29.55 68.60 2.03 46.56 16 25 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 26 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 27 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 28 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.05 1.05 7.75 -2.39 -0.02 1.03 16 34 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.42 0.47 8.47 -92.70 -0.79 -0.32 16 36 H 0.16 0.24 8.14 -2.38 -0.02 0.22 16 37 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 39 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.23 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.41 7.10 8.60 -92.71 -0.80 6.30 16 42 H 0.10 3.91 8.14 -2.39 -0.02 3.89 16 43 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 44 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -95.45 396.20 1.86 -93.59 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -0.56 Total: 15.69 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 5.97 Total: -10.78 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -4.29 Total: -85.94 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -0.12 Total: -49.30 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -95.45 1.86 -93.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077995071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.899 kcal (2) G-P(sol) polarization free energy of solvation -95.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds