Wall clock time and date at job start Wed Apr 1 2020 00:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35654 * 116.99873 * 2 1 4 4 C 1.38647 * 120.14081 * 0.02562 * 3 2 1 5 5 C 1.38202 * 120.06841 * 179.97438 * 4 3 2 6 6 Cl 1.73600 * 119.81678 * 179.97438 * 5 4 3 7 7 C 1.38699 * 120.36647 * 0.02562 * 5 4 3 8 8 C 1.37732 * 120.28170 * 359.68082 * 7 5 4 9 9 C 1.39745 * 119.92014 * 0.61087 * 8 7 5 10 10 C 1.47481 * 120.17723 * 179.67905 * 9 8 7 11 11 O 1.21587 * 119.99998 * 179.73043 * 10 9 8 12 12 N 1.34779 * 119.99845 * 359.73302 * 10 9 8 13 13 C 1.46500 * 119.99793 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47092 * 34.99824 * 13 12 10 15 15 C 1.53000 * 109.47023 * 274.99565 * 13 12 10 16 16 C 1.52997 * 109.47007 * 154.99772 * 13 12 10 17 17 C 1.52994 * 109.47404 * 294.99774 * 16 13 12 18 18 H 1.09001 * 109.47698 * 305.00111 * 17 16 13 19 19 C 1.53003 * 109.47265 * 184.99783 * 17 16 13 20 20 N 1.46504 * 109.46881 * 65.00370 * 17 16 13 21 21 C 1.36937 * 119.99855 * 205.00272 * 20 17 16 22 22 H 1.08001 * 119.99967 * 359.97438 * 21 20 17 23 23 C 1.38813 * 120.00180 * 179.97438 * 21 20 17 24 24 N 1.31619 * 119.99766 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00114 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47190 * 59.99725 * 25 23 21 27 27 H 1.48504 * 109.47082 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46743 * 299.99475 * 25 23 21 29 29 H 1.09004 * 109.47080 * 60.00121 * 1 2 3 30 30 H 1.08999 * 109.47034 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47084 * 299.99378 * 1 2 3 32 32 H 1.07995 * 119.96687 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.85851 * 179.97438 * 7 5 4 34 34 H 1.08002 * 120.03722 * 180.30215 * 8 7 5 35 35 H 0.97004 * 119.99983 * 359.97438 * 12 10 9 36 36 H 1.09001 * 109.47194 * 179.97438 * 15 13 12 37 37 H 1.08992 * 109.47399 * 300.00063 * 15 13 12 38 38 H 1.09004 * 109.46724 * 60.00549 * 15 13 12 39 39 H 1.09000 * 109.47325 * 54.99943 * 16 13 12 40 40 H 1.09008 * 109.47017 * 174.99852 * 16 13 12 41 41 H 1.09000 * 109.46720 * 60.00379 * 19 17 16 42 42 H 1.08998 * 109.47049 * 180.02562 * 19 17 16 43 43 H 1.08992 * 109.47227 * 299.99948 * 19 17 16 44 44 H 0.96995 * 120.00048 * 24.99698 * 20 17 16 45 45 H 0.97005 * 119.99941 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2926 2.3733 0.0005 5 6 1.9216 3.6039 0.0011 6 17 0.9732 5.0580 0.0011 7 6 3.3063 3.6837 0.0005 8 6 4.0680 2.5362 0.0061 9 6 3.4445 1.2856 -0.0006 10 6 4.2546 0.0532 -0.0018 11 8 3.7088 -1.0332 -0.0027 12 7 5.6002 0.1314 -0.0019 13 6 6.4050 -1.0928 -0.0026 14 1 5.9010 -1.8586 -0.5924 15 6 6.5803 -1.5886 1.4342 16 6 7.7774 -0.8005 -0.6123 17 6 7.6113 -0.4246 -2.0860 18 1 7.0653 -1.2137 -2.6030 19 6 8.9899 -0.2538 -2.7273 20 7 6.8661 0.8327 -2.1882 21 6 6.1570 1.1178 -3.3245 22 1 6.1474 0.4160 -4.1454 23 6 5.4505 2.3087 -3.4212 24 7 5.4618 3.1637 -2.4206 25 14 4.4826 2.6973 -4.9709 26 1 3.4519 1.6502 -5.1865 27 1 3.8217 4.0190 -4.8234 28 1 5.4045 2.7316 -6.1347 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.2140 2.3188 0.0005 33 1 3.7892 4.6497 0.0005 34 1 5.1460 2.6029 0.0106 35 1 6.0357 0.9982 -0.0016 36 1 7.1787 -2.4997 1.4337 37 1 7.0841 -0.8229 2.0239 38 1 5.6024 -1.7969 1.8685 39 1 8.2442 0.0263 -0.0768 40 1 8.4069 -1.6868 -0.5321 41 1 9.5443 -1.1892 -2.6512 42 1 8.8715 0.0144 -3.7771 43 1 9.5359 0.5353 -2.2105 44 1 6.8750 1.4630 -1.4511 45 1 4.9678 3.9958 -2.4880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135308998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:55 Heat of formation + Delta-G solvation = -39.969707 kcal Electronic energy + Delta-G solvation = -29096.154597 eV Core-core repulsion = 25140.502097 eV Total energy + Delta-G solvation = -3955.652500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.14766 -38.74712 -37.26348 -36.64723 -35.93707 -34.09968 -32.35021 -31.23104 -29.84244 -29.80486 -28.47966 -27.03255 -26.30326 -23.68538 -23.58145 -21.94748 -20.97405 -20.19986 -19.58896 -18.07155 -17.18262 -16.73488 -16.22638 -15.55889 -15.46668 -14.93301 -14.72933 -14.44635 -14.14260 -13.77097 -13.75989 -13.46433 -13.13167 -12.96785 -12.80410 -12.62407 -12.15738 -12.09131 -11.87153 -11.71556 -11.64448 -11.54147 -11.52072 -11.08934 -10.98926 -10.82083 -10.75955 -10.67478 -10.43959 -10.32639 -10.26351 -9.90619 -9.68248 -9.07679 -8.96701 -8.48123 -8.27443 -7.82448 -6.93651 -5.83693 -3.04948 1.20626 1.79960 2.30201 3.43376 3.45509 3.48501 3.51006 3.54627 3.87053 4.39342 4.58906 5.04343 5.11767 5.15817 5.28779 5.36926 5.42260 5.46434 5.53510 5.56584 5.58208 5.61691 5.71968 5.90196 5.96091 5.99455 6.03115 6.07829 6.16484 6.25634 6.30722 6.39915 6.47815 6.57295 6.59158 6.62535 6.78369 6.86420 7.03169 7.06340 7.26964 7.63848 7.68801 8.30120 8.38101 9.05644 9.49381 10.01371 10.37556 11.39031 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009631 B = 0.005383 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.636386 B = 5200.411983 C = 6768.710693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.277 6.277 3 C 0.189 3.811 4 C -0.234 4.234 5 C 0.024 3.976 6 Cl -0.081 7.081 7 C -0.148 4.148 8 C 0.030 3.970 9 C -0.165 4.165 10 C 0.574 3.426 11 O -0.544 6.544 12 N -0.698 5.698 13 C 0.152 3.848 14 H 0.083 0.917 15 C -0.162 4.162 16 C -0.133 4.133 17 C 0.169 3.831 18 H 0.048 0.952 19 C -0.163 4.163 20 N -0.714 5.714 21 C -0.221 4.221 22 H 0.066 0.934 23 C -0.007 4.007 24 N -0.927 5.927 25 Si 0.897 3.103 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.290 1.290 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.151 0.849 35 H 0.401 0.599 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.035 0.965 42 H 0.052 0.948 43 H 0.045 0.955 44 H 0.376 0.624 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.987 -2.071 9.102 9.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.188 6.188 3 C 0.141 3.859 4 C -0.254 4.254 5 C -0.003 4.003 6 Cl -0.053 7.053 7 C -0.167 4.167 8 C 0.010 3.990 9 C -0.170 4.170 10 C 0.362 3.638 11 O -0.423 6.423 12 N -0.351 5.351 13 C 0.047 3.953 14 H 0.101 0.899 15 C -0.220 4.220 16 C -0.172 4.172 17 C 0.059 3.941 18 H 0.066 0.934 19 C -0.223 4.223 20 N -0.357 5.357 21 C -0.352 4.352 22 H 0.084 0.916 23 C -0.203 4.203 24 N -0.575 5.575 25 Si 0.729 3.271 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.217 1.217 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.169 0.831 35 H 0.239 0.761 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.211 0.789 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.434 -2.926 8.911 9.989 hybrid contribution -0.740 1.368 -1.054 1.879 sum -4.174 -1.558 7.857 9.033 Atomic orbital electron populations 1.23100 0.79574 1.03786 1.00953 1.86396 1.20050 1.25267 1.87054 1.18801 0.90970 0.84015 0.92145 1.20783 1.00109 0.90520 1.13988 1.20768 0.91900 0.86365 1.01260 1.98341 1.72849 1.37267 1.96794 1.20768 0.90593 1.00066 1.05269 1.21159 1.00731 0.89186 0.87933 1.19428 0.90271 0.94850 1.12405 1.17699 0.82118 0.88112 0.75882 1.90727 1.71940 1.28865 1.50741 1.45855 1.05442 1.09410 1.74383 1.20767 0.91325 0.87857 0.95382 0.89928 1.22208 1.01895 1.00669 0.97274 1.22209 0.95644 1.01558 0.97796 1.20293 0.91504 0.90264 0.92042 0.93394 1.22412 0.98898 0.99280 1.01711 1.42433 1.57152 1.17809 1.18304 1.19159 1.20938 1.01222 0.93858 0.91630 1.24461 1.00966 0.97213 0.97645 1.69463 1.46816 1.10684 1.30574 0.86399 0.80049 0.77263 0.83353 1.21623 1.21681 1.21657 0.92839 0.88341 0.92935 0.84820 0.84770 0.83111 0.76092 0.92251 0.92872 0.92360 0.91792 0.90847 0.94599 0.92914 0.93620 0.78880 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 101.05 0.99 1.26 16 2 O -0.28 -5.11 8.57 -40.55 -0.35 -5.46 16 3 C 0.19 3.55 6.70 -38.71 -0.26 3.29 16 4 C -0.23 -3.85 8.80 -39.44 -0.35 -4.20 16 5 C 0.02 0.40 6.32 -39.42 -0.25 0.15 16 6 Cl -0.08 -1.18 28.94 -51.86 -1.50 -2.68 16 7 C -0.15 -2.55 9.80 -39.60 -0.39 -2.93 16 8 C 0.03 0.55 7.85 -39.20 -0.31 0.24 16 9 C -0.17 -3.27 5.89 -104.84 -0.62 -3.89 16 10 C 0.57 11.89 7.73 -12.49 -0.10 11.79 16 11 O -0.54 -12.58 14.82 -16.60 -0.25 -12.83 16 12 N -0.70 -12.56 3.75 -54.87 -0.21 -12.77 16 13 C 0.15 2.44 2.57 -67.93 -0.17 2.27 16 14 H 0.08 1.53 7.58 -51.93 -0.39 1.13 16 15 C -0.16 -2.19 9.48 37.16 0.35 -1.84 16 16 C -0.13 -1.95 4.43 -26.74 -0.12 -2.07 16 17 C 0.17 3.06 2.89 -67.93 -0.20 2.86 16 18 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 19 C -0.16 -2.72 9.49 37.16 0.35 -2.37 16 20 N -0.71 -15.46 3.84 -53.42 -0.21 -15.67 16 21 C -0.22 -5.59 9.93 -15.06 -0.15 -5.74 16 22 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 23 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 24 N -0.93 -23.07 10.76 55.49 0.60 -22.47 16 25 Si 0.90 21.91 29.55 -169.99 -5.02 16.88 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 29 H 0.05 0.64 7.66 -51.93 -0.40 0.24 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 32 H 0.13 1.86 6.30 -52.49 -0.33 1.53 16 33 H 0.13 2.15 8.06 -52.49 -0.42 1.72 16 34 H 0.15 2.77 5.87 -52.49 -0.31 2.46 16 35 H 0.40 7.08 4.54 -40.82 -0.19 6.89 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.38 8.18 5.70 -40.82 -0.23 7.95 16 45 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 LS Contribution 379.61 15.07 5.72 5.72 Total: -1.00 -28.63 379.61 -8.95 -37.59 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -6.44 Total: 13.15 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.30 Total: -1.47 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.19 Total: -50.91 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.59 Total: -18.29 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.50 Total: -2.68 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.63 -8.95 -37.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135308998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.385 kcal (2) G-P(sol) polarization free energy of solvation -28.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds