Wall clock time and date at job start Wed Apr 1 2020 00:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35654 * 116.99873 * 2 1 4 4 C 1.38647 * 120.14081 * 0.02562 * 3 2 1 5 5 C 1.38202 * 120.06841 * 179.97438 * 4 3 2 6 6 Cl 1.73600 * 119.81678 * 179.97438 * 5 4 3 7 7 C 1.38699 * 120.36647 * 0.02562 * 5 4 3 8 8 C 1.37732 * 120.28170 * 359.68082 * 7 5 4 9 9 C 1.39745 * 119.92014 * 0.61087 * 8 7 5 10 10 C 1.47481 * 120.17723 * 179.67905 * 9 8 7 11 11 O 1.21587 * 119.99998 * 179.73043 * 10 9 8 12 12 N 1.34779 * 119.99845 * 359.73302 * 10 9 8 13 13 C 1.46500 * 119.99793 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47092 * 34.99824 * 13 12 10 15 15 C 1.53000 * 109.47023 * 274.99565 * 13 12 10 16 16 C 1.52997 * 109.47007 * 154.99772 * 13 12 10 17 17 C 1.52994 * 109.47404 * 294.99774 * 16 13 12 18 18 H 1.09001 * 109.47698 * 305.00111 * 17 16 13 19 19 C 1.53003 * 109.47265 * 184.99783 * 17 16 13 20 20 N 1.46504 * 109.46881 * 65.00370 * 17 16 13 21 21 C 1.36937 * 119.99855 * 205.00272 * 20 17 16 22 22 H 1.08001 * 119.99967 * 359.97438 * 21 20 17 23 23 C 1.38813 * 120.00180 * 179.97438 * 21 20 17 24 24 N 1.31619 * 119.99766 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00114 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47190 * 59.99725 * 25 23 21 27 27 H 1.48504 * 109.47082 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46743 * 299.99475 * 25 23 21 29 29 H 1.09004 * 109.47080 * 60.00121 * 1 2 3 30 30 H 1.08999 * 109.47034 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47084 * 299.99378 * 1 2 3 32 32 H 1.07995 * 119.96687 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.85851 * 179.97438 * 7 5 4 34 34 H 1.08002 * 120.03722 * 180.30215 * 8 7 5 35 35 H 0.97004 * 119.99983 * 359.97438 * 12 10 9 36 36 H 1.09001 * 109.47194 * 179.97438 * 15 13 12 37 37 H 1.08992 * 109.47399 * 300.00063 * 15 13 12 38 38 H 1.09004 * 109.46724 * 60.00549 * 15 13 12 39 39 H 1.09000 * 109.47325 * 54.99943 * 16 13 12 40 40 H 1.09008 * 109.47017 * 174.99852 * 16 13 12 41 41 H 1.09000 * 109.46720 * 60.00379 * 19 17 16 42 42 H 1.08998 * 109.47049 * 180.02562 * 19 17 16 43 43 H 1.08992 * 109.47227 * 299.99948 * 19 17 16 44 44 H 0.96995 * 120.00048 * 24.99698 * 20 17 16 45 45 H 0.97005 * 119.99941 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2926 2.3733 0.0005 5 6 1.9216 3.6039 0.0011 6 17 0.9732 5.0580 0.0011 7 6 3.3063 3.6837 0.0005 8 6 4.0680 2.5362 0.0061 9 6 3.4445 1.2856 -0.0006 10 6 4.2546 0.0532 -0.0018 11 8 3.7088 -1.0332 -0.0027 12 7 5.6002 0.1314 -0.0019 13 6 6.4050 -1.0928 -0.0026 14 1 5.9010 -1.8586 -0.5924 15 6 6.5803 -1.5886 1.4342 16 6 7.7774 -0.8005 -0.6123 17 6 7.6113 -0.4246 -2.0860 18 1 7.0653 -1.2137 -2.6030 19 6 8.9899 -0.2538 -2.7273 20 7 6.8661 0.8327 -2.1882 21 6 6.1570 1.1178 -3.3245 22 1 6.1474 0.4160 -4.1454 23 6 5.4505 2.3087 -3.4212 24 7 5.4618 3.1637 -2.4206 25 14 4.4826 2.6973 -4.9709 26 1 3.4519 1.6502 -5.1865 27 1 3.8217 4.0190 -4.8234 28 1 5.4045 2.7316 -6.1347 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.2140 2.3188 0.0005 33 1 3.7892 4.6497 0.0005 34 1 5.1460 2.6029 0.0106 35 1 6.0357 0.9982 -0.0016 36 1 7.1787 -2.4997 1.4337 37 1 7.0841 -0.8229 2.0239 38 1 5.6024 -1.7969 1.8685 39 1 8.2442 0.0263 -0.0768 40 1 8.4069 -1.6868 -0.5321 41 1 9.5443 -1.1892 -2.6512 42 1 8.8715 0.0144 -3.7771 43 1 9.5359 0.5353 -2.2105 44 1 6.8750 1.4630 -1.4511 45 1 4.9678 3.9958 -2.4880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135308998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:55 Heat of formation + Delta-G solvation = -54.478939 kcal Electronic energy + Delta-G solvation = -29096.783764 eV Core-core repulsion = 25140.502097 eV Total energy + Delta-G solvation = -3956.281667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.53558 -40.16196 -38.56533 -38.15451 -37.23469 -35.68936 -34.02254 -32.70809 -31.26773 -31.13317 -30.06727 -28.14436 -27.55006 -25.50900 -24.99568 -23.27156 -22.33754 -21.63902 -21.06881 -19.41307 -19.02820 -18.13419 -17.59738 -16.91422 -16.75615 -16.51950 -16.18564 -15.91312 -15.60496 -15.42699 -15.32193 -14.73292 -14.54582 -14.30259 -14.21197 -14.04378 -13.54052 -13.41793 -13.26459 -13.14548 -12.87485 -12.81418 -12.74906 -12.71978 -12.56369 -12.30314 -12.23679 -12.14440 -11.95482 -11.70509 -11.65770 -11.53729 -11.36359 -10.82533 -10.64065 -9.89557 -9.73002 -9.18222 -8.72221 -7.79182 -4.97449 -0.18798 0.43707 1.01114 1.44873 1.49188 1.51016 1.98607 2.34223 2.47129 2.63695 2.93978 3.55370 3.74680 3.84144 3.95116 4.06550 4.11079 4.16244 4.23221 4.33608 4.34847 4.43235 4.56463 4.61666 4.67734 4.72122 4.76347 4.87445 4.91393 4.95512 4.97796 5.12799 5.18157 5.20971 5.23017 5.38857 5.41839 5.46707 5.65472 5.66545 5.69062 5.86813 6.37558 6.45147 6.82342 7.52581 7.54729 8.23112 8.52521 9.41198 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009631 B = 0.005383 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.636386 B = 5200.411983 C = 6768.710693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.307 6.307 3 C 0.176 3.824 4 C -0.227 4.227 5 C 0.024 3.976 6 Cl -0.058 7.058 7 C -0.155 4.155 8 C 0.030 3.970 9 C -0.194 4.194 10 C 0.565 3.435 11 O -0.579 6.579 12 N -0.690 5.690 13 C 0.147 3.853 14 H 0.053 0.947 15 C -0.151 4.151 16 C -0.119 4.119 17 C 0.162 3.838 18 H 0.025 0.975 19 C -0.152 4.152 20 N -0.716 5.716 21 C -0.229 4.229 22 H 0.049 0.951 23 C -0.037 4.037 24 N -0.922 5.922 25 Si 0.928 3.072 26 H -0.304 1.304 27 H -0.293 1.293 28 H -0.291 1.291 29 H 0.061 0.939 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.161 0.839 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.403 0.597 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.036 0.964 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.027 0.973 43 H 0.049 0.951 44 H 0.376 0.624 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.623 -1.723 10.256 10.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.218 6.218 3 C 0.128 3.872 4 C -0.247 4.247 5 C -0.003 4.003 6 Cl -0.029 7.029 7 C -0.174 4.174 8 C 0.010 3.990 9 C -0.198 4.198 10 C 0.354 3.646 11 O -0.461 6.461 12 N -0.342 5.342 13 C 0.042 3.958 14 H 0.071 0.929 15 C -0.209 4.209 16 C -0.157 4.157 17 C 0.053 3.947 18 H 0.043 0.957 19 C -0.212 4.212 20 N -0.359 5.359 21 C -0.361 4.361 22 H 0.067 0.933 23 C -0.233 4.233 24 N -0.571 5.571 25 Si 0.762 3.238 26 H -0.233 1.233 27 H -0.219 1.219 28 H -0.218 1.218 29 H 0.080 0.920 30 H 0.134 0.866 31 H 0.093 0.907 32 H 0.178 0.822 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.241 0.759 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.097 0.903 40 H 0.126 0.874 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.069 0.931 44 H 0.210 0.790 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.044 -2.575 10.081 10.841 hybrid contribution -0.945 1.240 -1.406 2.099 sum -3.989 -1.336 8.676 9.642 Atomic orbital electron populations 1.23441 0.76918 1.05569 1.02398 1.86355 1.22955 1.25540 1.86988 1.19007 0.91002 0.84925 0.92290 1.21028 1.01328 0.89693 1.12634 1.20893 0.92003 0.87354 1.00075 1.98349 1.72131 1.35828 1.96598 1.20916 0.91120 1.00086 1.05250 1.21097 1.00608 0.89208 0.88068 1.19609 0.91210 0.94908 1.14056 1.18004 0.82946 0.88102 0.75576 1.90686 1.72667 1.30025 1.52714 1.45893 1.04891 1.10192 1.73194 1.20926 0.91455 0.86426 0.96955 0.92867 1.22100 1.01408 1.02291 0.95111 1.22125 0.95166 1.03549 0.94887 1.20477 0.91546 0.88092 0.94552 0.95661 1.22258 0.98056 1.01050 0.99862 1.42426 1.57326 1.19025 1.17156 1.19148 1.21495 1.00833 0.94646 0.93333 1.24769 1.01922 0.97797 0.98778 1.69508 1.46865 1.10373 1.30364 0.85925 0.79045 0.76291 0.82547 1.23264 1.21910 1.21776 0.92007 0.86599 0.90692 0.82183 0.83694 0.83557 0.75877 0.89603 0.91175 0.94475 0.90298 0.87396 0.91420 0.95383 0.93149 0.78954 0.93869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.81 113.37 1.11 1.38 16 2 O -0.31 -11.39 8.57 -68.76 -0.59 -11.98 16 3 C 0.18 6.62 6.70 22.84 0.15 6.78 16 4 C -0.23 -7.19 8.80 22.36 0.20 -6.99 16 5 C 0.02 0.76 6.32 22.37 0.14 0.90 16 6 Cl -0.06 -1.55 28.94 -2.72 -0.08 -1.63 16 7 C -0.15 -5.22 9.80 22.26 0.22 -5.00 16 8 C 0.03 1.10 7.85 22.51 0.18 1.28 16 9 C -0.19 -7.81 5.89 -20.01 -0.12 -7.92 16 10 C 0.57 24.09 7.73 86.68 0.67 24.76 16 11 O -0.58 -27.82 14.82 16.94 0.25 -27.57 16 12 N -0.69 -25.08 3.75 -445.76 -1.67 -26.75 16 13 C 0.15 4.63 2.57 44.99 0.12 4.75 16 14 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 15 C -0.15 -3.82 9.48 71.98 0.68 -3.14 16 16 C -0.12 -3.22 4.43 30.59 0.14 -3.08 16 17 C 0.16 5.75 2.89 44.99 0.13 5.88 16 18 H 0.03 1.01 8.08 -2.39 -0.02 0.99 16 19 C -0.15 -4.83 9.49 71.98 0.68 -4.15 16 20 N -0.72 -31.09 3.84 -322.93 -1.24 -32.33 16 21 C -0.23 -11.78 9.93 84.03 0.83 -10.95 16 22 H 0.05 2.62 7.83 -2.91 -0.02 2.60 16 23 C -0.04 -1.95 5.50 84.86 0.47 -1.48 16 24 N -0.92 -45.86 10.76 21.65 0.23 -45.62 16 25 Si 0.93 45.30 29.55 68.60 2.03 47.33 16 26 H -0.30 -15.49 7.11 99.48 0.71 -14.79 16 27 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 28 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 29 H 0.06 1.38 7.66 -2.38 -0.02 1.36 16 30 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.07 1.46 7.66 -2.39 -0.02 1.44 16 32 H 0.16 4.06 6.30 -2.91 -0.02 4.04 16 33 H 0.15 4.48 8.06 -2.91 -0.02 4.46 16 34 H 0.15 5.42 5.87 -2.91 -0.02 5.41 16 35 H 0.40 14.25 4.54 -92.71 -0.42 13.83 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 41 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.38 16.26 5.70 -92.71 -0.53 15.73 16 45 H 0.25 12.58 8.31 -92.70 -0.77 11.81 16 Total: -1.00 -63.28 379.61 4.60 -58.68 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: 0.07 Total: 36.88 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 5.60 Total: 3.00 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -2.68 Total: -104.71 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -0.34 Total: -39.55 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -63.28 4.60 -58.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135308998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.205 kcal (2) G-P(sol) polarization free energy of solvation -63.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds