Wall clock time and date at job start Wed Apr 1 2020 00:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35943 * 116.99950 * 2 1 4 4 C 1.38411 * 119.98465 * 359.97438 * 3 2 1 5 5 C 1.39551 * 119.80145 * 179.97438 * 4 3 2 6 6 C 1.47798 * 120.10629 * 179.97438 * 5 4 3 7 7 O 1.21557 * 119.99716 * 355.08820 * 6 5 4 8 8 N 1.34774 * 120.00195 * 175.08265 * 6 5 4 9 9 C 1.46496 * 120.00286 * 184.75928 * 8 6 5 10 10 H 1.08996 * 109.46789 * 34.23746 * 9 8 6 11 11 C 1.52995 * 109.47517 * 274.23906 * 9 8 6 12 12 C 1.52999 * 109.47027 * 154.23426 * 9 8 6 13 13 C 1.53007 * 109.47385 * 296.87643 * 12 9 8 14 14 H 1.08995 * 109.46869 * 54.76505 * 13 12 9 15 15 C 1.53005 * 109.47037 * 294.76757 * 13 12 9 16 16 N 1.46495 * 109.47026 * 174.76495 * 13 12 9 17 17 C 1.36943 * 119.99786 * 204.88793 * 16 13 12 18 18 H 1.07994 * 119.99939 * 4.91950 * 17 16 13 19 19 C 1.38815 * 119.99622 * 184.91145 * 17 16 13 20 20 N 1.31618 * 119.99504 * 183.72884 * 19 17 16 21 21 Si 1.86796 * 120.00302 * 3.72725 * 19 17 16 22 22 H 1.48495 * 109.47123 * 91.96166 * 21 19 17 23 23 H 1.48502 * 109.46773 * 211.96360 * 21 19 17 24 24 H 1.48499 * 109.47065 * 331.96355 * 21 19 17 25 25 C 1.39623 * 119.78667 * 0.02562 * 5 4 3 26 26 C 1.37924 * 119.97720 * 0.27254 * 25 5 4 27 27 C 1.38418 * 120.19088 * 359.44956 * 26 25 5 28 28 Cl 1.73598 * 119.89334 * 180.28123 * 27 26 25 29 29 H 1.09003 * 109.46946 * 60.00078 * 1 2 3 30 30 H 1.08997 * 109.47210 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46892 * 300.00362 * 1 2 3 32 32 H 1.07998 * 120.10304 * 0.02562 * 4 3 2 33 33 H 0.97004 * 120.00000 * 4.76911 * 8 6 5 34 34 H 1.08998 * 109.47478 * 59.99222 * 11 9 8 35 35 H 1.09001 * 109.47490 * 179.97438 * 11 9 8 36 36 H 1.09007 * 109.46541 * 299.99555 * 11 9 8 37 37 H 1.08999 * 109.47308 * 56.88275 * 12 9 8 38 38 H 1.09000 * 109.47051 * 176.87786 * 12 9 8 39 39 H 1.08995 * 109.47085 * 299.99615 * 15 13 12 40 40 H 1.09005 * 109.46871 * 59.99642 * 15 13 12 41 41 H 1.08998 * 109.46894 * 179.97438 * 15 13 12 42 42 H 0.97003 * 120.00274 * 24.89400 * 16 13 12 43 43 H 0.96998 * 120.00004 * 180.02562 * 20 19 17 44 44 H 1.08002 * 120.01127 * 179.97438 * 25 5 4 45 45 H 1.07997 * 119.90349 * 179.72288 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2920 2.3719 -0.0005 5 6 1.9295 3.6133 0.0000 6 6 1.1308 4.8568 -0.0011 7 8 -0.0800 4.8014 -0.0927 8 7 1.7450 6.0523 0.0994 9 6 0.9495 7.2781 0.2034 10 1 0.0391 7.0737 0.7669 11 6 0.5821 7.7682 -1.1986 12 6 1.7638 8.3550 0.9231 13 6 2.0645 7.8974 2.3518 14 1 2.5528 6.9233 2.3261 15 6 0.7570 7.7918 3.1394 16 7 2.9480 8.8696 3.0001 17 6 3.7540 8.4783 4.0358 18 1 3.7977 7.4380 4.3227 19 6 4.5149 9.4187 4.7167 20 7 5.3445 9.0335 5.6631 21 14 4.3615 11.2307 4.2897 22 1 3.3345 11.8589 5.1591 23 1 5.6688 11.9019 4.5034 24 1 3.9593 11.3717 2.8672 25 6 3.3243 3.6767 0.0005 26 6 4.0670 2.5145 -0.0051 27 6 3.4338 1.2837 0.0001 28 17 4.3762 -0.1742 0.0003 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2134 2.3170 -0.0005 33 1 2.7138 6.1011 0.1029 34 1 0.0021 7.0009 -1.7114 35 1 -0.0101 8.6800 -1.1213 36 1 1.4926 7.9726 -1.7621 37 1 2.6999 8.5199 0.3897 38 1 1.1935 9.2835 0.9514 39 1 0.2687 8.7659 3.1651 40 1 0.0997 7.0684 2.6569 41 1 0.9712 7.4654 4.1571 42 1 2.9621 9.7906 2.6959 43 1 5.8759 9.6906 6.1392 44 1 3.8215 4.6355 0.0006 45 1 5.1458 2.5650 -0.0092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135621267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:07 Heat of formation + Delta-G solvation = -46.374947 kcal Electronic energy + Delta-G solvation = -27137.189653 eV Core-core repulsion = 23181.259401 eV Total energy + Delta-G solvation = -3955.930252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.83246 -39.71115 -37.75113 -37.10264 -36.53078 -34.84055 -32.47016 -31.65197 -30.93658 -30.17640 -29.10602 -27.65111 -26.42714 -24.48381 -23.53784 -22.65512 -21.49361 -20.68410 -19.85658 -18.95220 -17.64038 -17.03884 -16.63249 -16.58375 -16.18646 -15.98091 -15.17157 -14.67878 -14.56595 -14.39114 -14.17044 -14.12202 -13.68623 -13.51385 -13.29251 -12.84415 -12.66536 -12.62571 -12.23737 -12.19834 -12.01150 -11.82016 -11.78099 -11.76048 -11.43362 -11.31555 -11.09782 -11.04081 -10.69073 -10.58582 -10.23702 -10.04738 -10.00217 -9.61449 -9.29074 -9.07451 -8.96801 -8.58241 -7.29865 -5.79696 -3.15396 0.36855 0.93988 1.85035 2.58033 2.79720 3.04150 3.33025 3.38140 3.43151 3.49192 4.35707 4.41895 4.56057 4.62690 4.69005 4.77739 4.85272 4.86527 5.01332 5.11601 5.19505 5.23885 5.32904 5.45846 5.51781 5.57465 5.60575 5.67278 5.76318 5.80185 5.86672 5.92941 6.06433 6.14264 6.15293 6.20425 6.36749 6.46874 6.53476 6.79936 6.84058 6.99823 7.42595 7.97894 8.09122 8.39495 9.18720 9.91011 10.11204 11.38607 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.002781 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.407845 B =10066.445331 C =11505.444187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.304 6.304 3 C 0.128 3.872 4 C -0.141 4.141 5 C -0.087 4.087 6 C 0.560 3.440 7 O -0.538 6.538 8 N -0.710 5.710 9 C 0.144 3.856 10 H 0.094 0.906 11 C -0.162 4.162 12 C -0.138 4.138 13 C 0.178 3.822 14 H 0.054 0.946 15 C -0.168 4.168 16 N -0.750 5.750 17 C -0.242 4.242 18 H 0.089 0.911 19 C 0.004 3.996 20 N -0.933 5.933 21 Si 0.887 3.113 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.278 1.278 25 C -0.108 4.108 26 C -0.077 4.077 27 C -0.048 4.048 28 Cl -0.052 7.052 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.150 0.850 33 H 0.403 0.597 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.045 0.955 40 H 0.040 0.960 41 H 0.056 0.944 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.141 0.859 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.953 -14.799 -16.805 23.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.082 3.918 4 C -0.161 4.161 5 C -0.091 4.091 6 C 0.347 3.653 7 O -0.416 6.416 8 N -0.362 5.362 9 C 0.039 3.961 10 H 0.112 0.888 11 C -0.220 4.220 12 C -0.176 4.176 13 C 0.068 3.932 14 H 0.072 0.928 15 C -0.228 4.228 16 N -0.394 5.394 17 C -0.372 4.372 18 H 0.107 0.893 19 C -0.192 4.192 20 N -0.581 5.581 21 Si 0.718 3.282 22 H -0.212 1.212 23 H -0.219 1.219 24 H -0.205 1.205 25 C -0.127 4.127 26 C -0.096 4.096 27 C -0.076 4.076 28 Cl -0.023 7.023 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.079 0.921 32 H 0.168 0.832 33 H 0.239 0.761 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.195 0.805 43 H 0.069 0.931 44 H 0.159 0.841 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.533 -15.264 -16.658 24.152 hybrid contribution 0.350 1.425 -0.063 1.468 sum -8.183 -13.840 -16.721 23.197 Atomic orbital electron populations 1.23177 0.77620 1.04402 1.01986 1.86167 1.21884 1.25331 1.88336 1.18526 0.90413 0.85241 0.97625 1.21278 1.01161 0.90095 1.03533 1.19874 0.93609 0.93427 1.02167 1.18091 0.87341 0.83374 0.76532 1.90758 1.13807 1.87320 1.49721 1.46032 1.10751 1.05833 1.73570 1.21092 0.95340 0.83263 0.96358 0.88802 1.22176 1.01689 1.01470 0.96710 1.22253 1.00223 0.97824 0.97338 1.20168 0.90362 0.93732 0.88905 0.92777 1.22467 0.98567 1.00154 1.01584 1.42859 1.47976 1.08188 1.40359 1.19057 1.16425 0.95339 1.06390 0.89340 1.24697 0.99018 0.97415 0.98037 1.69706 1.28824 1.33075 1.26506 0.86516 0.76963 0.87034 0.77693 1.21220 1.21858 1.20500 1.21252 0.92428 0.98906 1.00137 1.20899 1.01094 0.89321 0.98252 1.20413 0.88819 0.89168 1.09187 1.98378 1.71629 1.35495 1.96831 0.92199 0.87771 0.92087 0.83203 0.76114 0.92225 0.91561 0.92481 0.91087 0.90513 0.93606 0.94116 0.92474 0.80550 0.93076 0.84119 0.83380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.30 -3.11 9.94 -19.56 -0.19 -3.31 16 3 C 0.13 1.41 6.68 -39.25 -0.26 1.15 16 4 C -0.14 -1.57 8.58 -39.03 -0.33 -1.90 16 5 C -0.09 -1.01 5.87 -104.98 -0.62 -1.62 16 6 C 0.56 7.31 7.73 -12.35 -0.10 7.21 16 7 O -0.54 -8.46 16.05 5.32 0.09 -8.38 16 8 N -0.71 -8.31 4.31 -54.77 -0.24 -8.55 16 9 C 0.14 1.75 2.40 -67.94 -0.16 1.59 16 10 H 0.09 1.29 5.91 -51.93 -0.31 0.98 16 11 C -0.16 -1.71 9.49 37.16 0.35 -1.36 16 12 C -0.14 -1.87 4.42 -26.73 -0.12 -1.99 16 13 C 0.18 3.16 2.90 -67.93 -0.20 2.96 16 14 H 0.05 1.00 7.47 -51.93 -0.39 0.61 16 15 C -0.17 -2.92 9.25 37.16 0.34 -2.57 16 16 N -0.75 -16.82 4.90 -53.42 -0.26 -17.08 16 17 C -0.24 -6.60 10.41 -15.06 -0.16 -6.76 16 18 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 19 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 20 N -0.93 -28.83 13.97 55.49 0.78 -28.05 16 21 Si 0.89 21.68 27.92 -169.99 -4.75 16.93 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.28 -6.28 6.27 56.52 0.35 -5.93 16 25 C -0.11 -1.06 9.53 -39.18 -0.37 -1.43 16 26 C -0.08 -0.74 9.81 -39.63 -0.39 -1.12 16 27 C -0.05 -0.52 6.34 -39.25 -0.25 -0.77 16 28 Cl -0.05 -0.54 28.49 -51.86 -1.48 -2.02 16 29 H 0.06 0.36 7.66 -51.93 -0.40 -0.03 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 32 H 0.15 1.58 5.89 -52.49 -0.31 1.27 16 33 H 0.40 4.09 6.63 -40.82 -0.27 3.82 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.63 6.51 -51.93 -0.34 0.29 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.36 7.99 5.58 -40.82 -0.23 7.76 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.14 1.11 6.41 -52.49 -0.34 0.78 16 45 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 384.08 15.07 5.79 5.79 Total: -1.00 -33.10 384.08 -8.01 -41.11 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -6.38 Total: 9.01 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.36 Total: -5.46 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.28 Total: -53.68 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -0.11 Total: -11.69 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.75 Total: 16.93 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.48 Total: -2.02 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.10 -8.01 -41.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135621267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.260 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds