Wall clock time and date at job start Wed Apr 1 2020 00:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35943 * 116.99950 * 2 1 4 4 C 1.38411 * 119.98465 * 359.97438 * 3 2 1 5 5 C 1.39551 * 119.80145 * 179.97438 * 4 3 2 6 6 C 1.47798 * 120.10629 * 179.97438 * 5 4 3 7 7 O 1.21557 * 119.99716 * 355.08820 * 6 5 4 8 8 N 1.34774 * 120.00195 * 175.08265 * 6 5 4 9 9 C 1.46496 * 120.00286 * 184.75928 * 8 6 5 10 10 H 1.08996 * 109.46789 * 34.23746 * 9 8 6 11 11 C 1.52995 * 109.47517 * 274.23906 * 9 8 6 12 12 C 1.52999 * 109.47027 * 154.23426 * 9 8 6 13 13 C 1.53007 * 109.47385 * 296.87643 * 12 9 8 14 14 H 1.08995 * 109.46869 * 54.76505 * 13 12 9 15 15 C 1.53005 * 109.47037 * 294.76757 * 13 12 9 16 16 N 1.46495 * 109.47026 * 174.76495 * 13 12 9 17 17 C 1.36943 * 119.99786 * 204.88793 * 16 13 12 18 18 H 1.07994 * 119.99939 * 4.91950 * 17 16 13 19 19 C 1.38815 * 119.99622 * 184.91145 * 17 16 13 20 20 N 1.31618 * 119.99504 * 183.72884 * 19 17 16 21 21 Si 1.86796 * 120.00302 * 3.72725 * 19 17 16 22 22 H 1.48495 * 109.47123 * 91.96166 * 21 19 17 23 23 H 1.48502 * 109.46773 * 211.96360 * 21 19 17 24 24 H 1.48499 * 109.47065 * 331.96355 * 21 19 17 25 25 C 1.39623 * 119.78667 * 0.02562 * 5 4 3 26 26 C 1.37924 * 119.97720 * 0.27254 * 25 5 4 27 27 C 1.38418 * 120.19088 * 359.44956 * 26 25 5 28 28 Cl 1.73598 * 119.89334 * 180.28123 * 27 26 25 29 29 H 1.09003 * 109.46946 * 60.00078 * 1 2 3 30 30 H 1.08997 * 109.47210 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46892 * 300.00362 * 1 2 3 32 32 H 1.07998 * 120.10304 * 0.02562 * 4 3 2 33 33 H 0.97004 * 120.00000 * 4.76911 * 8 6 5 34 34 H 1.08998 * 109.47478 * 59.99222 * 11 9 8 35 35 H 1.09001 * 109.47490 * 179.97438 * 11 9 8 36 36 H 1.09007 * 109.46541 * 299.99555 * 11 9 8 37 37 H 1.08999 * 109.47308 * 56.88275 * 12 9 8 38 38 H 1.09000 * 109.47051 * 176.87786 * 12 9 8 39 39 H 1.08995 * 109.47085 * 299.99615 * 15 13 12 40 40 H 1.09005 * 109.46871 * 59.99642 * 15 13 12 41 41 H 1.08998 * 109.46894 * 179.97438 * 15 13 12 42 42 H 0.97003 * 120.00274 * 24.89400 * 16 13 12 43 43 H 0.96998 * 120.00004 * 180.02562 * 20 19 17 44 44 H 1.08002 * 120.01127 * 179.97438 * 25 5 4 45 45 H 1.07997 * 119.90349 * 179.72288 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2920 2.3719 -0.0005 5 6 1.9295 3.6133 0.0000 6 6 1.1308 4.8568 -0.0011 7 8 -0.0800 4.8014 -0.0927 8 7 1.7450 6.0523 0.0994 9 6 0.9495 7.2781 0.2034 10 1 0.0391 7.0737 0.7669 11 6 0.5821 7.7682 -1.1986 12 6 1.7638 8.3550 0.9231 13 6 2.0645 7.8974 2.3518 14 1 2.5528 6.9233 2.3261 15 6 0.7570 7.7918 3.1394 16 7 2.9480 8.8696 3.0001 17 6 3.7540 8.4783 4.0358 18 1 3.7977 7.4380 4.3227 19 6 4.5149 9.4187 4.7167 20 7 5.3445 9.0335 5.6631 21 14 4.3615 11.2307 4.2897 22 1 3.3345 11.8589 5.1591 23 1 5.6688 11.9019 4.5034 24 1 3.9593 11.3717 2.8672 25 6 3.3243 3.6767 0.0005 26 6 4.0670 2.5145 -0.0051 27 6 3.4338 1.2837 0.0001 28 17 4.3762 -0.1742 0.0003 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2134 2.3170 -0.0005 33 1 2.7138 6.1011 0.1029 34 1 0.0021 7.0009 -1.7114 35 1 -0.0101 8.6800 -1.1213 36 1 1.4926 7.9726 -1.7621 37 1 2.6999 8.5199 0.3897 38 1 1.1935 9.2835 0.9514 39 1 0.2687 8.7659 3.1651 40 1 0.0997 7.0684 2.6569 41 1 0.9712 7.4654 4.1571 42 1 2.9621 9.7906 2.6959 43 1 5.8759 9.6906 6.1392 44 1 3.8215 4.6355 0.0006 45 1 5.1458 2.5650 -0.0092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135621267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:06 Heat of formation + Delta-G solvation = -67.547442 kcal Electronic energy + Delta-G solvation = -27138.107761 eV Core-core repulsion = 23181.259401 eV Total energy + Delta-G solvation = -3956.848360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.69649 -40.62871 -38.67607 -38.24282 -37.38677 -36.28995 -34.11150 -32.89793 -31.86898 -31.17953 -30.57765 -28.29095 -27.62895 -25.65474 -25.11247 -23.44379 -22.61065 -21.80498 -21.20890 -19.94381 -19.45312 -17.90935 -17.54844 -17.38515 -16.97701 -16.86132 -16.66338 -16.15707 -15.80197 -15.37000 -15.25871 -15.11093 -14.84377 -14.67801 -14.39900 -14.26983 -13.92489 -13.57650 -13.45388 -13.35849 -12.98546 -12.94691 -12.83802 -12.71640 -12.57973 -12.47357 -12.24021 -12.14535 -12.02041 -11.90515 -11.81437 -11.59315 -11.46704 -11.09377 -10.95921 -10.19963 -9.99640 -9.38276 -9.28360 -7.98256 -5.31302 -0.49336 0.14930 1.03491 1.39858 1.45230 1.51870 1.65070 2.03612 2.18208 2.52187 2.61417 3.33595 3.43822 3.55921 3.60891 3.85732 3.94788 4.00324 4.14129 4.21657 4.22208 4.31769 4.33218 4.46124 4.57477 4.59255 4.65791 4.69422 4.78012 4.82143 4.92704 4.96945 4.98114 5.05338 5.06916 5.12535 5.34293 5.37330 5.40154 5.47055 5.61086 5.82988 6.10865 6.25939 6.47742 7.11710 7.13606 7.89809 8.09641 9.23386 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.002781 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.407845 B =10066.445331 C =11505.444187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.317 6.317 3 C 0.122 3.878 4 C -0.147 4.147 5 C -0.101 4.101 6 C 0.560 3.440 7 O -0.570 6.570 8 N -0.704 5.704 9 C 0.148 3.852 10 H 0.079 0.921 11 C -0.155 4.155 12 C -0.124 4.124 13 C 0.171 3.829 14 H 0.045 0.955 15 C -0.161 4.161 16 N -0.750 5.750 17 C -0.224 4.224 18 H 0.053 0.947 19 C -0.067 4.067 20 N -0.986 5.986 21 Si 0.957 3.043 22 H -0.287 1.287 23 H -0.300 1.300 24 H -0.243 1.243 25 C -0.105 4.105 26 C -0.075 4.075 27 C -0.059 4.059 28 Cl -0.052 7.052 29 H 0.065 0.935 30 H 0.127 0.873 31 H 0.061 0.939 32 H 0.151 0.849 33 H 0.411 0.589 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.025 0.975 42 H 0.367 0.633 43 H 0.256 0.744 44 H 0.160 0.840 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.472 -13.636 -18.893 24.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.230 6.230 3 C 0.076 3.924 4 C -0.167 4.167 5 C -0.105 4.105 6 C 0.347 3.653 7 O -0.450 6.450 8 N -0.356 5.356 9 C 0.043 3.957 10 H 0.098 0.902 11 C -0.213 4.213 12 C -0.162 4.162 13 C 0.064 3.936 14 H 0.063 0.937 15 C -0.220 4.220 16 N -0.394 5.394 17 C -0.355 4.355 18 H 0.071 0.929 19 C -0.258 4.258 20 N -0.637 5.637 21 Si 0.784 3.216 22 H -0.214 1.214 23 H -0.227 1.227 24 H -0.167 1.167 25 C -0.124 4.124 26 C -0.094 4.094 27 C -0.087 4.087 28 Cl -0.023 7.023 29 H 0.084 0.916 30 H 0.145 0.855 31 H 0.079 0.921 32 H 0.168 0.832 33 H 0.249 0.751 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.201 0.799 43 H 0.065 0.935 44 H 0.178 0.822 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -9.082 -14.110 -18.800 25.200 hybrid contribution 0.465 0.902 0.599 1.179 sum -8.617 -13.208 -18.201 24.083 Atomic orbital electron populations 1.23421 0.76040 1.06053 1.02294 1.86152 1.23576 1.25072 1.88234 1.18626 0.90695 0.85462 0.97654 1.21323 1.01332 0.90227 1.03840 1.19871 0.94283 0.92865 1.03438 1.18296 0.87040 0.84017 0.75907 1.90737 1.15143 1.87770 1.51395 1.46008 1.11215 1.05498 1.72892 1.21024 0.94459 0.82913 0.97267 0.90246 1.22102 1.02355 1.01629 0.95191 1.22105 1.01257 0.98645 0.94191 1.20383 0.89453 0.92558 0.91225 0.93710 1.22356 0.98754 1.01107 0.99797 1.42837 1.47982 1.09272 1.39351 1.18987 1.15971 0.93727 1.06814 0.92916 1.25519 0.99271 1.02491 0.98487 1.69896 1.30627 1.34593 1.28582 0.85384 0.76346 0.80550 0.79282 1.21382 1.22672 1.16737 1.21461 0.91768 0.99917 0.99258 1.21169 1.02183 0.88723 0.97275 1.20649 0.88981 0.89674 1.09366 1.98375 1.71492 1.35568 1.96831 0.91609 0.85490 0.92061 0.83177 0.75132 0.93278 0.90142 0.91181 0.89964 0.89038 0.92682 0.92264 0.95582 0.79905 0.93532 0.82228 0.81267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.32 -6.37 9.94 -92.91 -0.92 -7.29 16 3 C 0.12 2.65 6.68 22.48 0.15 2.80 16 4 C -0.15 -3.26 8.58 22.63 0.19 -3.07 16 5 C -0.10 -2.27 5.87 -20.10 -0.12 -2.38 16 6 C 0.56 14.16 7.73 86.77 0.67 14.83 16 7 O -0.57 -17.75 16.05 -3.89 -0.06 -17.81 16 8 N -0.70 -15.27 4.31 -445.48 -1.92 -17.19 16 9 C 0.15 3.24 2.40 44.99 0.11 3.35 16 10 H 0.08 2.02 5.91 -2.39 -0.01 2.01 16 11 C -0.15 -2.79 9.49 71.98 0.68 -2.11 16 12 C -0.12 -2.96 4.42 30.60 0.14 -2.83 16 13 C 0.17 5.80 2.90 45.00 0.13 5.93 16 14 H 0.04 1.61 7.47 -2.39 -0.02 1.59 16 15 C -0.16 -5.39 9.25 71.98 0.67 -4.72 16 16 N -0.75 -32.32 4.90 -322.94 -1.58 -33.90 16 17 C -0.22 -12.24 10.41 84.03 0.87 -11.37 16 18 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 19 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 20 N -0.99 -62.32 13.97 21.65 0.30 -62.02 16 21 Si 0.96 44.06 27.92 68.60 1.92 45.98 16 22 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 23 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 24 H -0.24 -9.65 6.27 99.48 0.62 -9.03 16 25 C -0.11 -1.92 9.53 22.53 0.21 -1.71 16 26 C -0.08 -1.33 9.81 22.24 0.22 -1.12 16 27 C -0.06 -1.23 6.34 22.48 0.14 -1.08 16 28 Cl -0.05 -1.03 28.49 -2.72 -0.08 -1.11 16 29 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 30 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 0.79 7.66 -2.38 -0.02 0.77 16 32 H 0.15 3.21 5.89 -2.91 -0.02 3.19 16 33 H 0.41 7.47 6.63 -92.70 -0.61 6.85 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 38 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.06 1.76 6.51 -2.38 -0.02 1.75 16 41 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.37 15.00 5.58 -92.71 -0.52 14.48 16 43 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 44 H 0.16 2.20 6.41 -2.91 -0.02 2.18 16 45 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -72.51 384.08 3.11 -69.40 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: -0.19 Total: 29.44 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 5.65 Total: -5.50 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -3.20 Total: -113.11 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.99 Total: -25.10 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.92 Total: 45.98 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -72.51 3.11 -69.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135621267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.850 kcal (2) G-P(sol) polarization free energy of solvation -72.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds