Wall clock time and date at job start Wed Apr 1 2020 00:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35707 * 117.00417 * 2 1 4 4 C 1.39061 * 119.89692 * 0.02598 * 3 2 1 5 5 C 1.37647 * 120.12463 * 179.72140 * 4 3 2 6 6 C 1.39780 * 119.92017 * 0.50191 * 5 4 3 7 7 C 1.47535 * 120.09732 * 179.76801 * 6 5 4 8 8 O 1.21587 * 120.00052 * 179.72728 * 7 6 5 9 9 N 1.34779 * 119.99790 * 359.73011 * 7 6 5 10 10 C 1.46500 * 119.99793 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47092 * 34.99824 * 10 9 7 12 12 C 1.53000 * 109.47023 * 274.99565 * 10 9 7 13 13 C 1.52997 * 109.47007 * 154.99772 * 10 9 7 14 14 C 1.52994 * 109.47404 * 294.99774 * 13 10 9 15 15 H 1.09004 * 109.47057 * 55.00109 * 14 13 10 16 16 C 1.53000 * 109.47356 * 174.99986 * 14 13 10 17 17 N 1.46498 * 109.47321 * 295.00158 * 14 13 10 18 18 C 1.36933 * 119.99922 * 154.99712 * 17 14 13 19 19 H 1.08001 * 120.00266 * 0.02562 * 18 17 14 20 20 C 1.38814 * 120.00103 * 179.97438 * 18 17 14 21 21 N 1.31622 * 119.99630 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00202 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47151 * 60.00244 * 22 20 18 24 24 H 1.48507 * 109.47132 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47077 * 299.99793 * 22 20 18 26 26 C 1.39850 * 119.80633 * 359.49820 * 6 5 4 27 27 Cl 1.73599 * 120.06479 * 180.27116 * 26 6 5 28 28 C 1.37899 * 119.87093 * 0.25058 * 26 6 5 29 29 H 1.08994 * 109.47322 * 299.99881 * 1 2 3 30 30 H 1.09001 * 109.47038 * 59.99614 * 1 2 3 31 31 H 1.09002 * 109.47397 * 179.97438 * 1 2 3 32 32 H 1.07997 * 119.94077 * 359.97438 * 4 3 2 33 33 H 1.08008 * 120.03774 * 180.25715 * 5 4 3 34 34 H 0.97004 * 119.99983 * 359.97438 * 9 7 6 35 35 H 1.08992 * 109.47399 * 300.00063 * 12 10 9 36 36 H 1.09004 * 109.46724 * 60.00549 * 12 10 9 37 37 H 1.09001 * 109.47194 * 179.97438 * 12 10 9 38 38 H 1.09000 * 109.47325 * 54.99943 * 13 10 9 39 39 H 1.09008 * 109.47017 * 174.99852 * 13 10 9 40 40 H 1.09006 * 109.47459 * 180.02562 * 16 14 13 41 41 H 1.09006 * 109.47194 * 300.00318 * 16 14 13 42 42 H 1.08994 * 109.47345 * 60.00428 * 16 14 13 43 43 H 0.96992 * 120.00062 * 334.99652 * 17 14 13 44 44 H 0.97007 * 120.00007 * 179.97438 * 21 20 18 45 45 H 1.08004 * 119.96132 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 1.2858 2.3741 0.0005 5 6 1.9059 3.6029 0.0063 6 6 3.3016 3.6796 0.0011 7 6 3.9703 4.9947 0.0021 8 8 5.1844 5.0594 0.0025 9 7 3.2352 6.1244 0.0026 10 6 3.8992 7.4303 0.0042 11 1 4.8147 7.3732 -0.5847 12 6 4.2414 7.8267 1.4418 13 6 2.9654 8.4780 -0.6052 14 6 2.7229 8.1491 -2.0796 15 1 2.3481 7.1293 -2.1674 16 6 1.6929 9.1223 -2.6565 17 7 3.9804 8.2728 -2.8208 18 6 4.1623 7.5711 -3.9825 19 1 3.3785 6.9267 -4.3525 20 6 5.3536 7.6887 -4.6852 21 7 6.3086 8.4744 -4.2346 22 14 5.6020 6.7309 -6.2696 23 1 4.5638 7.1263 -7.2550 24 1 6.9481 7.0281 -6.8219 25 1 5.4919 5.2764 -5.9912 26 6 4.0622 2.5061 0.0005 27 17 5.7960 2.5936 0.0011 28 6 3.4324 1.2794 0.0000 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2074 2.3146 0.0006 33 1 1.3147 4.5068 0.0110 34 1 2.2665 6.0728 0.0019 35 1 3.3260 7.8839 2.0306 36 1 4.9067 7.0803 1.8758 37 1 4.7359 8.7981 1.4429 38 1 2.0155 8.4728 -0.0707 39 1 3.4230 9.4640 -0.5234 40 1 1.5197 8.8877 -3.7068 41 1 0.7572 9.0303 -2.1049 42 1 2.0676 10.1421 -2.5687 43 1 4.6841 8.8518 -2.4888 44 1 7.1413 8.5564 -4.7254 45 1 4.0184 0.3722 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135695394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:02 Heat of formation + Delta-G solvation = -39.936513 kcal Electronic energy + Delta-G solvation = -27693.036139 eV Core-core repulsion = 23737.385079 eV Total energy + Delta-G solvation = -3955.651060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.63474 -39.47422 -37.64515 -36.56665 -36.16793 -34.39115 -32.27445 -31.59725 -30.78970 -29.83091 -28.54366 -27.71300 -26.27933 -23.86947 -23.51805 -22.86878 -21.19331 -20.27444 -19.67528 -18.70825 -17.64466 -17.03492 -16.76786 -16.16284 -15.62269 -15.34906 -14.82792 -14.68510 -14.38029 -14.32048 -13.81727 -13.77497 -13.63953 -13.24410 -12.91199 -12.81701 -12.59396 -12.47350 -12.10969 -11.98687 -11.88854 -11.69418 -11.58713 -11.37364 -11.06810 -10.99706 -10.88330 -10.76268 -10.55075 -10.36722 -10.19401 -9.85738 -9.55741 -9.20346 -9.07400 -8.81421 -8.69653 -8.45211 -6.86020 -5.66756 -2.94515 0.68683 0.92238 2.07153 2.92107 2.95525 3.44734 3.50434 3.55580 3.55734 3.78640 4.33482 4.59194 4.67240 4.68069 4.76251 4.80524 4.93277 5.07981 5.09738 5.18808 5.45386 5.48083 5.53194 5.66843 5.72210 5.74460 5.89961 5.93023 5.94551 5.99928 6.05220 6.11818 6.17812 6.32735 6.41287 6.48684 6.61176 6.77689 6.86140 6.93051 6.98566 7.10985 7.77644 7.85107 8.51610 8.61758 9.63005 10.20204 10.54336 11.55970 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009510 B = 0.003692 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.555620 B = 7581.483790 C = 8156.833604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.159 3.841 4 C -0.215 4.215 5 C -0.033 4.033 6 C -0.158 4.158 7 C 0.555 3.445 8 O -0.508 6.508 9 N -0.713 5.713 10 C 0.146 3.854 11 H 0.107 0.893 12 C -0.160 4.160 13 C -0.131 4.131 14 C 0.172 3.828 15 H 0.045 0.955 16 C -0.165 4.165 17 N -0.719 5.719 18 C -0.234 4.234 19 H 0.066 0.934 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.287 1.287 26 C 0.052 3.948 27 Cl -0.017 7.017 28 C -0.158 4.158 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.390 0.610 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.033 0.967 42 H 0.046 0.954 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.430 -12.530 14.111 23.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.113 3.887 4 C -0.234 4.234 5 C -0.052 4.052 6 C -0.162 4.162 7 C 0.341 3.659 8 O -0.383 6.383 9 N -0.365 5.365 10 C 0.042 3.958 11 H 0.125 0.875 12 C -0.219 4.219 13 C -0.169 4.169 14 C 0.062 3.938 15 H 0.063 0.937 16 C -0.226 4.226 17 N -0.361 5.361 18 C -0.366 4.366 19 H 0.084 0.916 20 C -0.206 4.206 21 N -0.580 5.580 22 Si 0.732 3.268 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.024 3.976 27 Cl 0.013 6.987 28 C -0.177 4.177 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.224 0.776 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.273 -12.758 13.959 23.103 hybrid contribution -0.344 -0.201 -0.955 1.035 sum -13.616 -12.959 13.003 22.857 Atomic orbital electron populations 1.23149 0.77762 1.04326 1.01773 1.86043 1.21874 1.26525 1.87950 1.18970 0.91620 0.84452 0.93684 1.21216 1.00552 0.91861 1.09754 1.21052 0.92605 0.97812 0.93775 1.19835 0.93394 0.93628 1.09373 1.17828 0.87214 0.83493 0.77376 1.90895 1.12768 1.86853 1.47823 1.45857 1.09353 1.05812 1.75450 1.21028 0.98100 0.80872 0.95831 0.87474 1.22181 1.01064 1.01746 0.96884 1.22171 0.98602 0.98763 0.97413 1.20212 0.88346 0.96467 0.88801 0.93722 1.22465 0.98115 1.00809 1.01170 1.42370 1.13497 1.54288 1.25945 1.19090 0.99173 1.19441 0.98854 0.91646 1.24670 0.96627 1.00180 0.99140 1.69635 1.06322 1.41674 1.40340 0.86358 0.76834 0.79824 0.83738 1.21466 1.21719 1.21331 1.20683 0.87162 0.92617 0.97119 1.98444 1.06099 1.98476 1.95711 1.20166 0.91716 0.97391 1.08442 0.92281 0.92163 0.87941 0.84388 0.84438 0.77588 0.93256 0.92440 0.91771 0.92168 0.90597 0.92952 0.94806 0.93533 0.78333 0.93577 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.94 10.48 -18.82 -0.20 -3.14 16 3 C 0.16 1.71 6.69 -39.03 -0.26 1.45 16 4 C -0.22 -2.02 9.01 -39.49 -0.36 -2.37 16 5 C -0.03 -0.36 9.53 -39.22 -0.37 -0.73 16 6 C -0.16 -2.29 5.88 -104.93 -0.62 -2.90 16 7 C 0.56 9.56 7.72 -12.47 -0.10 9.46 16 8 O -0.51 -10.73 13.62 5.29 0.07 -10.66 16 9 N -0.71 -10.55 4.40 -54.85 -0.24 -10.79 16 10 C 0.15 2.36 2.52 -67.93 -0.17 2.19 16 11 H 0.11 2.30 7.05 -51.93 -0.37 1.93 16 12 C -0.16 -2.22 9.48 37.16 0.35 -1.87 16 13 C -0.13 -1.98 4.29 -26.74 -0.11 -2.09 16 14 C 0.17 3.24 2.84 -67.93 -0.19 3.05 16 15 H 0.04 0.86 7.56 -51.93 -0.39 0.47 16 16 C -0.17 -2.87 9.49 37.16 0.35 -2.52 16 17 N -0.72 -17.74 4.49 -53.43 -0.24 -17.98 16 18 C -0.23 -6.57 9.93 -15.06 -0.15 -6.72 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 22 Si 0.90 23.28 29.55 -169.99 -5.02 18.25 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 C 0.05 0.77 6.35 -39.10 -0.25 0.52 16 27 Cl -0.02 -0.28 26.01 -51.86 -1.35 -1.63 16 28 C -0.16 -1.93 9.75 -39.46 -0.38 -2.31 16 29 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 30 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.14 0.87 6.27 -52.49 -0.33 0.54 16 33 H 0.14 1.10 6.40 -52.48 -0.34 0.77 16 34 H 0.39 4.48 6.62 -40.82 -0.27 4.21 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 44 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 45 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 386.20 15.07 5.82 5.82 Total: -1.00 -34.59 386.20 -8.38 -42.97 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.58 Total: 9.35 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -1.36 Total: -4.12 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.24 Total: -56.83 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.13 Total: -13.80 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.02 Total: 18.25 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.35 Total: -1.63 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.59 -8.38 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135695394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.029 kcal (2) G-P(sol) polarization free energy of solvation -34.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds