Wall clock time and date at job start Wed Apr 1 2020 00:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35705 * 117.00024 * 2 1 4 4 C 1.39054 * 119.90010 * 0.02562 * 3 2 1 5 5 C 1.37656 * 120.12359 * 179.72483 * 4 3 2 6 6 C 1.39772 * 119.92224 * 0.50959 * 5 4 3 7 7 C 1.47535 * 120.10025 * 179.77101 * 6 5 4 8 8 O 1.21594 * 119.99731 * 179.72313 * 7 6 5 9 9 N 1.34778 * 119.99788 * 359.72254 * 7 6 5 10 10 C 1.46495 * 119.99718 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47210 * 324.99916 * 10 9 7 12 12 C 1.52999 * 109.47389 * 85.00140 * 10 9 7 13 13 C 1.53006 * 109.46696 * 204.99517 * 10 9 7 14 14 C 1.52997 * 109.46841 * 65.00499 * 13 10 9 15 15 H 1.09005 * 109.47159 * 54.99606 * 14 13 10 16 16 C 1.52999 * 109.47264 * 174.99605 * 14 13 10 17 17 N 1.46498 * 109.47167 * 294.99436 * 14 13 10 18 18 C 1.36935 * 120.00239 * 154.99975 * 17 14 13 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 14 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 14 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72253 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72375 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72186 * 22 20 18 26 26 C 1.39861 * 119.80402 * 359.49142 * 6 5 4 27 27 Cl 1.73593 * 120.06286 * 180.27448 * 26 6 5 28 28 C 1.37895 * 119.86950 * 0.25635 * 26 6 5 29 29 H 1.08997 * 109.47095 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47498 * 300.00553 * 1 2 3 31 31 H 1.09007 * 109.46839 * 60.00825 * 1 2 3 32 32 H 1.07994 * 119.94266 * 0.02562 * 4 3 2 33 33 H 1.07998 * 120.03505 * 180.25971 * 5 4 3 34 34 H 0.96997 * 119.99976 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.47632 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47086 * 299.99744 * 12 10 9 37 37 H 1.09007 * 109.47428 * 59.99518 * 12 10 9 38 38 H 1.08996 * 109.47489 * 304.99916 * 13 10 9 39 39 H 1.09001 * 109.46720 * 184.99882 * 13 10 9 40 40 H 1.08994 * 109.47102 * 299.99987 * 16 14 13 41 41 H 1.09005 * 109.47033 * 59.99923 * 16 14 13 42 42 H 1.08994 * 109.47214 * 179.97438 * 16 14 13 43 43 H 0.97004 * 119.99747 * 335.00715 * 17 14 13 44 44 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 45 45 H 1.08000 * 119.96052 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2857 2.3740 0.0005 5 6 1.9059 3.6030 0.0063 6 6 3.3015 3.6797 0.0008 7 6 3.9702 4.9948 0.0018 8 8 5.1844 5.0594 0.0021 9 7 3.2352 6.1245 0.0023 10 6 3.8992 7.4303 0.0028 11 1 4.8143 7.3724 0.5920 12 6 4.2422 7.8286 -1.4341 13 6 2.9650 8.4772 0.6129 14 6 2.7217 8.1464 2.0867 15 1 3.6780 8.0635 2.6032 16 6 1.8902 9.2589 2.7286 17 7 1.9995 6.8760 2.1893 18 6 2.1040 6.1187 3.3254 19 1 2.7186 6.4583 4.1461 20 6 1.4202 4.9146 3.4224 21 7 0.6669 4.5034 2.4244 22 14 1.5622 3.8819 4.9725 23 1 0.7366 2.6561 4.8280 24 1 2.9817 3.5006 5.1849 25 1 1.0813 4.6683 6.1368 26 6 4.0622 2.5061 0.0002 27 17 5.7960 2.5936 0.0006 28 6 3.4324 1.2794 -0.0002 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 0.2074 2.3145 0.0014 33 1 1.3147 4.5068 0.0109 34 1 2.2666 6.0729 0.0017 35 1 4.7359 8.8004 -1.4339 36 1 4.9077 7.0828 -1.8688 37 1 3.3271 7.8865 -2.0235 38 1 2.0154 8.4727 0.0779 39 1 3.4226 9.4633 0.5326 40 1 2.4275 10.2041 2.6523 41 1 0.9339 9.3418 2.2121 42 1 1.7165 9.0230 3.7784 43 1 1.4473 6.5711 1.4523 44 1 0.5928 5.0398 1.6195 45 1 4.0184 0.3722 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135695395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:05 Heat of formation + Delta-G solvation = -29.977557 kcal Electronic energy + Delta-G solvation = -29072.605411 eV Core-core repulsion = 25117.386203 eV Total energy + Delta-G solvation = -3955.219207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.08333 -39.15996 -37.32906 -36.49745 -35.72925 -34.30011 -32.63574 -31.16872 -30.34041 -29.48257 -28.28092 -27.17390 -26.38902 -23.62448 -23.27657 -22.30835 -20.93734 -20.35744 -19.72817 -18.14582 -17.41837 -17.04272 -16.29833 -15.59268 -15.52575 -15.07260 -14.73214 -14.37190 -14.22649 -14.03850 -13.71101 -13.51243 -13.19203 -13.04930 -13.00669 -12.53575 -12.33599 -12.13838 -11.96744 -11.91721 -11.74843 -11.61672 -11.47076 -11.11102 -10.82680 -10.77646 -10.55133 -10.48932 -10.44364 -10.38729 -10.13248 -10.00371 -9.19995 -8.99557 -8.89456 -8.44526 -8.37269 -7.87972 -7.01995 -6.14105 -3.10467 1.29471 1.65104 2.50087 3.43256 3.49959 3.50721 3.55032 3.68174 3.78079 4.30933 4.63440 4.98595 5.05195 5.21391 5.28074 5.30886 5.34978 5.39709 5.44494 5.55517 5.57066 5.62396 5.64224 5.75138 5.80043 5.91990 5.93981 6.06788 6.12535 6.16133 6.27472 6.31617 6.40362 6.45798 6.52965 6.57066 6.73531 6.78371 6.79552 6.97282 7.14029 7.53220 7.78539 8.14496 8.67706 8.91484 9.14789 9.99514 10.15661 11.30634 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009098 B = 0.005812 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3076.939308 B = 4816.816048 C = 6415.175242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.156 3.844 4 C -0.188 4.188 5 C 0.019 3.981 6 C -0.167 4.167 7 C 0.570 3.430 8 O -0.539 6.539 9 N -0.699 5.699 10 C 0.152 3.848 11 H 0.085 0.915 12 C -0.162 4.162 13 C -0.135 4.135 14 C 0.174 3.826 15 H 0.050 0.950 16 C -0.162 4.162 17 N -0.726 5.726 18 C -0.310 4.310 19 H 0.061 0.939 20 C -0.040 4.040 21 N -0.934 5.934 22 Si 1.068 2.932 23 H -0.286 1.286 24 H -0.297 1.297 25 H -0.298 1.298 26 C 0.051 3.949 27 Cl -0.040 7.040 28 C -0.171 4.171 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.395 0.605 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.358 0.642 44 H 0.246 0.754 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.074 -1.158 -8.753 8.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.109 3.891 4 C -0.207 4.207 5 C -0.001 4.001 6 C -0.171 4.171 7 C 0.358 3.642 8 O -0.418 6.418 9 N -0.352 5.352 10 C 0.047 3.953 11 H 0.103 0.897 12 C -0.220 4.220 13 C -0.173 4.173 14 C 0.065 3.935 15 H 0.068 0.932 16 C -0.223 4.223 17 N -0.370 5.370 18 C -0.441 4.441 19 H 0.079 0.921 20 C -0.237 4.237 21 N -0.582 5.582 22 Si 0.900 3.100 23 H -0.212 1.212 24 H -0.224 1.224 25 H -0.226 1.226 26 C 0.023 3.977 27 Cl -0.010 7.010 28 C -0.191 4.191 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.232 0.768 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.193 0.807 44 H 0.058 0.942 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.668 -2.614 -7.795 8.249 hybrid contribution -0.410 1.524 -0.493 1.653 sum 0.258 -1.091 -8.288 8.364 Atomic orbital electron populations 1.23099 0.78054 1.03612 1.02125 1.85964 1.21709 1.26943 1.88329 1.18933 0.91478 0.84384 0.94272 1.21079 1.00475 0.91546 1.07632 1.20918 0.91858 0.97971 0.89378 1.19583 0.93584 0.92799 1.11172 1.17823 0.86743 0.83767 0.75910 1.90778 1.13120 1.87375 1.50503 1.45849 1.09826 1.04905 1.74634 1.20779 0.96676 0.82303 0.95506 0.89740 1.22204 1.01395 1.01294 0.97116 1.22229 0.99253 0.98061 0.97779 1.20224 0.94791 0.86524 0.91970 0.93236 1.22397 1.00080 0.98000 1.01775 1.42454 1.56229 1.20239 1.18044 1.20013 1.26623 1.02882 0.94538 0.92084 1.25422 0.97694 0.96161 1.04378 1.71070 1.41445 1.40005 1.05633 0.83364 0.75748 0.76278 0.74567 1.21157 1.22438 1.22611 1.20474 0.85598 0.92813 0.98795 1.98376 1.07918 1.98555 1.96163 1.19927 0.91648 0.96858 1.10665 0.88521 0.91688 0.92624 0.84670 0.84896 0.76813 0.92160 0.92219 0.92948 0.91992 0.90679 0.94449 0.93792 0.92829 0.80723 0.94196 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.80 10.48 -18.82 -0.20 -4.99 16 3 C 0.16 2.65 6.69 -39.03 -0.26 2.39 16 4 C -0.19 -3.26 9.01 -39.49 -0.36 -3.62 16 5 C 0.02 0.35 7.81 -39.22 -0.31 0.04 16 6 C -0.17 -3.32 5.88 -104.93 -0.62 -3.94 16 7 C 0.57 11.65 7.72 -12.47 -0.10 11.55 16 8 O -0.54 -12.00 13.62 5.28 0.07 -11.93 16 9 N -0.70 -12.55 3.75 -54.85 -0.21 -12.76 16 10 C 0.15 2.45 2.57 -67.93 -0.17 2.27 16 11 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 12 C -0.16 -2.18 9.48 37.16 0.35 -1.83 16 13 C -0.13 -1.99 4.43 -26.73 -0.12 -2.11 16 14 C 0.17 3.22 2.89 -67.93 -0.20 3.02 16 15 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 16 C -0.16 -2.76 9.49 37.16 0.35 -2.41 16 17 N -0.73 -15.90 3.84 -53.43 -0.21 -16.10 16 18 C -0.31 -7.99 9.93 -15.06 -0.15 -8.14 16 19 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 20 C -0.04 -1.04 5.50 -17.43 -0.10 -1.14 16 21 N -0.93 -24.05 12.24 55.49 0.68 -23.37 16 22 Si 1.07 25.38 29.92 -169.99 -5.09 20.29 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 26 C 0.05 0.98 6.35 -39.10 -0.25 0.73 16 27 Cl -0.04 -0.74 26.01 -51.86 -1.35 -2.09 16 28 C -0.17 -2.98 9.75 -39.46 -0.38 -3.37 16 29 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.80 7.65 -51.93 -0.40 0.40 16 31 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 32 H 0.14 2.11 6.27 -52.49 -0.33 1.79 16 33 H 0.13 2.44 4.70 -52.49 -0.25 2.19 16 34 H 0.39 6.92 4.53 -40.82 -0.19 6.74 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.36 7.76 4.54 -40.82 -0.19 7.57 16 44 H 0.25 6.01 4.76 -40.82 -0.19 5.82 16 45 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -29.42 373.41 -8.16 -37.57 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -6.18 Total: 13.00 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -1.31 Total: -5.25 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.27 Total: -52.23 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.13 Total: -16.92 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.09 Total: 20.29 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.35 Total: -2.09 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.42 -8.16 -37.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135695395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.594 kcal (2) G-P(sol) polarization free energy of solvation -29.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds