Wall clock time and date at job start Wed Apr 1 2020 00:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35705 * 117.00024 * 2 1 4 4 C 1.39054 * 119.90010 * 0.02562 * 3 2 1 5 5 C 1.37656 * 120.12359 * 179.72483 * 4 3 2 6 6 C 1.39772 * 119.92224 * 0.50959 * 5 4 3 7 7 C 1.47535 * 120.10025 * 179.77101 * 6 5 4 8 8 O 1.21594 * 119.99731 * 179.72313 * 7 6 5 9 9 N 1.34778 * 119.99788 * 359.72254 * 7 6 5 10 10 C 1.46495 * 119.99718 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47210 * 324.99916 * 10 9 7 12 12 C 1.52999 * 109.47389 * 85.00140 * 10 9 7 13 13 C 1.53006 * 109.46696 * 204.99517 * 10 9 7 14 14 C 1.52997 * 109.46841 * 65.00499 * 13 10 9 15 15 H 1.09005 * 109.47159 * 54.99606 * 14 13 10 16 16 C 1.52999 * 109.47264 * 174.99605 * 14 13 10 17 17 N 1.46498 * 109.47167 * 294.99436 * 14 13 10 18 18 C 1.36935 * 120.00239 * 154.99975 * 17 14 13 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 14 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 14 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72253 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72375 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72186 * 22 20 18 26 26 C 1.39861 * 119.80402 * 359.49142 * 6 5 4 27 27 Cl 1.73593 * 120.06286 * 180.27448 * 26 6 5 28 28 C 1.37895 * 119.86950 * 0.25635 * 26 6 5 29 29 H 1.08997 * 109.47095 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47498 * 300.00553 * 1 2 3 31 31 H 1.09007 * 109.46839 * 60.00825 * 1 2 3 32 32 H 1.07994 * 119.94266 * 0.02562 * 4 3 2 33 33 H 1.07998 * 120.03505 * 180.25971 * 5 4 3 34 34 H 0.96997 * 119.99976 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.47632 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47086 * 299.99744 * 12 10 9 37 37 H 1.09007 * 109.47428 * 59.99518 * 12 10 9 38 38 H 1.08996 * 109.47489 * 304.99916 * 13 10 9 39 39 H 1.09001 * 109.46720 * 184.99882 * 13 10 9 40 40 H 1.08994 * 109.47102 * 299.99987 * 16 14 13 41 41 H 1.09005 * 109.47033 * 59.99923 * 16 14 13 42 42 H 1.08994 * 109.47214 * 179.97438 * 16 14 13 43 43 H 0.97004 * 119.99747 * 335.00715 * 17 14 13 44 44 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 45 45 H 1.08000 * 119.96052 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2857 2.3740 0.0005 5 6 1.9059 3.6030 0.0063 6 6 3.3015 3.6797 0.0008 7 6 3.9702 4.9948 0.0018 8 8 5.1844 5.0594 0.0021 9 7 3.2352 6.1245 0.0023 10 6 3.8992 7.4303 0.0028 11 1 4.8143 7.3724 0.5920 12 6 4.2422 7.8286 -1.4341 13 6 2.9650 8.4772 0.6129 14 6 2.7217 8.1464 2.0867 15 1 3.6780 8.0635 2.6032 16 6 1.8902 9.2589 2.7286 17 7 1.9995 6.8760 2.1893 18 6 2.1040 6.1187 3.3254 19 1 2.7186 6.4583 4.1461 20 6 1.4202 4.9146 3.4224 21 7 0.6669 4.5034 2.4244 22 14 1.5622 3.8819 4.9725 23 1 0.7366 2.6561 4.8280 24 1 2.9817 3.5006 5.1849 25 1 1.0813 4.6683 6.1368 26 6 4.0622 2.5061 0.0002 27 17 5.7960 2.5936 0.0006 28 6 3.4324 1.2794 -0.0002 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 0.2074 2.3145 0.0014 33 1 1.3147 4.5068 0.0109 34 1 2.2666 6.0729 0.0017 35 1 4.7359 8.8004 -1.4339 36 1 4.9077 7.0828 -1.8688 37 1 3.3271 7.8865 -2.0235 38 1 2.0154 8.4727 0.0779 39 1 3.4226 9.4633 0.5326 40 1 2.4275 10.2041 2.6523 41 1 0.9339 9.3418 2.2121 42 1 1.7165 9.0230 3.7784 43 1 1.4473 6.5711 1.4523 44 1 0.5928 5.0398 1.6195 45 1 4.0184 0.3722 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135695395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:04 Heat of formation + Delta-G solvation = -46.058066 kcal Electronic energy + Delta-G solvation = -29073.302714 eV Core-core repulsion = 25117.386203 eV Total energy + Delta-G solvation = -3955.916511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.46368 -40.52799 -38.71445 -37.99740 -37.15440 -35.90717 -34.28574 -32.62136 -31.74805 -30.86889 -29.90118 -28.22637 -27.64451 -25.47888 -24.68669 -23.68890 -22.31072 -21.78630 -21.21981 -19.54779 -19.20722 -18.44216 -17.65282 -16.90779 -16.72183 -16.67689 -16.14240 -15.88932 -15.81751 -15.59169 -15.34818 -14.90420 -14.57285 -14.44230 -14.38235 -13.93019 -13.71173 -13.48504 -13.34818 -13.08829 -13.03016 -12.87304 -12.74253 -12.69548 -12.53056 -12.19925 -12.16306 -11.92966 -11.85308 -11.75117 -11.72660 -11.58885 -11.07195 -10.84143 -10.44335 -9.90496 -9.82239 -9.25286 -8.82867 -8.15052 -5.06382 -0.14185 0.24736 1.07799 1.57205 1.63605 1.77666 1.95432 2.28917 2.42908 2.72316 2.84546 3.56071 3.63619 3.73282 3.86961 3.97073 4.01729 4.12441 4.14706 4.31139 4.34322 4.42698 4.47427 4.51537 4.63560 4.71671 4.78322 4.80668 4.81055 4.87203 4.92205 5.02321 5.05758 5.11835 5.17133 5.32498 5.34314 5.36014 5.44252 5.55870 5.73944 5.77164 6.29531 6.66264 6.73046 7.28648 7.40082 8.13718 8.28187 9.32394 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009098 B = 0.005812 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3076.939308 B = 4816.816048 C = 6415.175242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.320 6.320 3 C 0.161 3.839 4 C -0.192 4.192 5 C 0.015 3.985 6 C -0.191 4.191 7 C 0.560 3.440 8 O -0.567 6.567 9 N -0.692 5.692 10 C 0.148 3.852 11 H 0.055 0.945 12 C -0.150 4.150 13 C -0.120 4.120 14 C 0.168 3.832 15 H 0.024 0.976 16 C -0.152 4.152 17 N -0.728 5.728 18 C -0.319 4.319 19 H 0.040 0.960 20 C -0.074 4.074 21 N -0.939 5.939 22 Si 1.097 2.903 23 H -0.288 1.288 24 H -0.305 1.305 25 H -0.290 1.290 26 C 0.036 3.964 27 Cl -0.043 7.043 28 C -0.173 4.173 29 H 0.129 0.871 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.152 0.848 33 H 0.132 0.868 34 H 0.397 0.603 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.026 0.974 43 H 0.360 0.640 44 H 0.249 0.751 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.346 -0.769 -9.827 9.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.233 6.233 3 C 0.114 3.886 4 C -0.210 4.210 5 C -0.004 4.004 6 C -0.195 4.195 7 C 0.349 3.651 8 O -0.448 6.448 9 N -0.344 5.344 10 C 0.044 3.956 11 H 0.073 0.927 12 C -0.208 4.208 13 C -0.158 4.158 14 C 0.059 3.941 15 H 0.042 0.958 16 C -0.212 4.212 17 N -0.373 5.373 18 C -0.451 4.451 19 H 0.058 0.942 20 C -0.270 4.270 21 N -0.587 5.587 22 Si 0.928 3.072 23 H -0.214 1.214 24 H -0.233 1.233 25 H -0.217 1.217 26 C 0.008 3.992 27 Cl -0.014 7.014 28 C -0.193 4.193 29 H 0.147 0.853 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.170 0.830 33 H 0.150 0.850 34 H 0.234 0.766 35 H 0.104 0.896 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.127 0.873 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.194 0.806 44 H 0.061 0.939 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.627 -2.192 -8.886 9.173 hybrid contribution -0.045 1.348 -0.168 1.359 sum -0.673 -0.844 -9.054 9.118 Atomic orbital electron populations 1.23433 0.75887 1.05942 1.02459 1.85977 1.23854 1.25770 1.87734 1.19004 0.91462 0.85065 0.93030 1.21286 1.01404 0.91199 1.07150 1.20931 0.91374 0.98552 0.89563 1.19727 0.94296 0.92858 1.12610 1.18077 0.86641 0.84640 0.75781 1.90745 1.14141 1.87836 1.52108 1.45878 1.09811 1.05157 1.73562 1.20924 0.95726 0.81882 0.97085 0.92690 1.22094 1.01974 1.01866 0.94915 1.22140 0.99929 0.99012 0.94735 1.20402 0.93429 0.85684 0.94570 0.95834 1.22246 1.00416 0.98701 0.99808 1.42427 1.56692 1.21200 1.16958 1.19999 1.26305 1.03517 0.95327 0.94229 1.26048 0.98156 0.97012 1.05768 1.71064 1.41584 1.40178 1.05841 0.82945 0.75026 0.75551 0.73660 1.21363 1.23320 1.21661 1.20666 0.85616 0.93384 0.99526 1.98364 1.08180 1.98597 1.96231 1.20150 0.92255 0.96900 1.09968 0.85327 0.92651 0.90913 0.83014 0.85002 0.76573 0.89594 0.94211 0.91256 0.90411 0.87290 0.91244 0.93219 0.95508 0.80565 0.93859 0.82693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.32 -9.04 10.48 -90.25 -0.95 -9.98 16 3 C 0.16 5.29 6.69 22.63 0.15 5.44 16 4 C -0.19 -6.43 9.01 22.33 0.20 -6.23 16 5 C 0.02 0.57 7.81 22.50 0.18 0.75 16 6 C -0.19 -7.67 5.88 -20.06 -0.12 -7.79 16 7 C 0.56 23.39 7.72 86.69 0.67 24.06 16 8 O -0.57 -26.02 13.62 -4.01 -0.05 -26.07 16 9 N -0.69 -24.86 3.75 -445.70 -1.67 -26.53 16 10 C 0.15 4.64 2.57 44.99 0.12 4.76 16 11 H 0.05 2.06 7.58 -2.39 -0.02 2.05 16 12 C -0.15 -3.76 9.48 71.98 0.68 -3.08 16 13 C -0.12 -3.26 4.43 30.60 0.14 -3.12 16 14 C 0.17 6.06 2.89 44.99 0.13 6.19 16 15 H 0.02 0.97 8.08 -2.38 -0.02 0.95 16 16 C -0.15 -4.92 9.49 71.98 0.68 -4.23 16 17 N -0.73 -31.92 3.84 -322.94 -1.24 -33.16 16 18 C -0.32 -16.74 9.93 84.03 0.83 -15.90 16 19 H 0.04 2.20 7.83 -2.91 -0.02 2.18 16 20 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 21 N -0.94 -47.96 12.24 21.65 0.26 -47.70 16 22 Si 1.10 51.65 29.92 68.60 2.05 53.70 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 H -0.31 -14.64 7.11 99.48 0.71 -13.93 16 25 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 26 C 0.04 1.39 6.35 22.58 0.14 1.54 16 27 Cl -0.04 -1.63 26.01 -2.72 -0.07 -1.71 16 28 C -0.17 -5.92 9.75 22.35 0.22 -5.71 16 29 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.25 7.65 -2.39 -0.02 1.23 16 31 H 0.07 1.23 7.65 -2.38 -0.02 1.21 16 32 H 0.15 4.49 6.27 -2.91 -0.02 4.47 16 33 H 0.13 4.82 4.70 -2.91 -0.01 4.80 16 34 H 0.40 13.80 4.53 -92.71 -0.42 13.38 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.36 15.43 4.54 -92.71 -0.42 15.01 16 44 H 0.25 12.09 4.76 -92.71 -0.44 11.65 16 45 H 0.16 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -64.34 373.41 4.45 -59.89 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: 0.51 Total: 36.88 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 5.60 Total: -5.33 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -2.65 Total: -107.39 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -1.00 Total: -36.05 kcal Atomic # 14 Polarization: 51.65 SS G_CDS: 2.05 Total: 53.70 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.07 Total: -1.71 kcal Total: -64.34 4.45 -59.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135695395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.834 kcal (2) G-P(sol) polarization free energy of solvation -64.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds