Wall clock time and date at job start Wed Apr 1 2020 00:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35711 * 116.99687 * 2 1 4 4 C 1.39057 * 119.90043 * 0.02613 * 3 2 1 5 5 C 1.37645 * 120.12570 * 179.71768 * 4 3 2 6 6 C 1.39784 * 119.92138 * 0.50601 * 5 4 3 7 7 C 1.47530 * 120.10245 * 179.76487 * 6 5 4 8 8 O 1.21588 * 120.00485 * 179.72473 * 7 6 5 9 9 N 1.34784 * 119.99631 * 359.72747 * 7 6 5 10 10 C 1.46494 * 119.99635 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47431 * 324.99476 * 10 9 7 12 12 C 1.53001 * 109.47305 * 85.00093 * 10 9 7 13 13 C 1.53003 * 109.47057 * 205.00313 * 10 9 7 14 14 C 1.53000 * 109.47314 * 64.99789 * 13 10 9 15 15 H 1.09003 * 109.47270 * 305.00088 * 14 13 10 16 16 C 1.52998 * 109.46929 * 185.00476 * 14 13 10 17 17 N 1.46494 * 109.46955 * 65.00331 * 14 13 10 18 18 C 1.36936 * 119.99853 * 204.99795 * 17 14 13 19 19 H 1.08001 * 120.00108 * 0.02562 * 18 17 14 20 20 C 1.38817 * 119.99764 * 179.97438 * 18 17 14 21 21 N 1.31613 * 119.99906 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99904 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46884 * 60.00296 * 22 20 18 24 24 H 1.48492 * 109.47244 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47027 * 300.00399 * 22 20 18 26 26 C 1.39852 * 119.80286 * 359.49524 * 6 5 4 27 27 Cl 1.73597 * 120.06867 * 180.27404 * 26 6 5 28 28 C 1.37899 * 119.87075 * 0.25152 * 26 6 5 29 29 H 1.09005 * 109.46781 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47044 * 299.99519 * 1 2 3 31 31 H 1.09005 * 109.47166 * 60.00159 * 1 2 3 32 32 H 1.08000 * 119.94155 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.04524 * 180.25200 * 5 4 3 34 34 H 0.96995 * 120.00015 * 359.72373 * 9 7 6 35 35 H 1.08991 * 109.46933 * 300.00042 * 12 10 9 36 36 H 1.09000 * 109.46920 * 59.99971 * 12 10 9 37 37 H 1.08996 * 109.46997 * 179.97438 * 12 10 9 38 38 H 1.08999 * 109.47427 * 185.00341 * 13 10 9 39 39 H 1.09010 * 109.47093 * 305.00188 * 13 10 9 40 40 H 1.09006 * 109.47053 * 180.02562 * 16 14 13 41 41 H 1.09002 * 109.47057 * 299.99384 * 16 14 13 42 42 H 1.08998 * 109.47605 * 59.99843 * 16 14 13 43 43 H 0.97001 * 120.00176 * 25.00565 * 17 14 13 44 44 H 0.97009 * 119.99792 * 179.97438 * 21 20 18 45 45 H 1.08007 * 119.96187 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2856 2.3741 0.0005 5 6 1.9056 3.6030 0.0064 6 6 3.3014 3.6798 0.0011 7 6 3.9700 4.9949 0.0022 8 8 5.1842 5.0597 0.0026 9 7 3.2349 6.1246 0.0026 10 6 3.8988 7.4305 0.0042 11 1 4.8135 7.3724 0.5943 12 6 4.2430 7.8294 -1.4322 13 6 2.9642 8.4771 0.6142 14 6 2.7197 8.1455 2.0877 15 1 2.3448 7.1256 2.1733 16 6 1.6888 9.1177 2.6649 17 7 3.9762 8.2680 2.8308 18 6 4.1565 7.5643 3.9916 19 1 3.3726 6.9186 4.3590 20 6 5.3474 7.6800 4.6955 21 7 6.3029 8.4664 4.2474 22 14 5.5937 6.7194 6.2786 23 1 5.4828 5.2654 5.9977 24 1 6.9390 7.0157 6.8331 25 1 4.5549 7.1139 7.2636 26 6 4.0621 2.5063 0.0006 27 17 5.7959 2.5937 0.0012 28 6 3.4323 1.2796 0.0000 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2073 2.3145 0.0006 33 1 1.3145 4.5068 0.0110 34 1 2.2663 6.0730 -0.0017 35 1 4.9088 7.0838 -1.8667 36 1 3.3284 7.8876 -2.0222 37 1 4.7366 8.8012 -1.4310 38 1 3.4217 9.4632 0.5347 39 1 2.0149 8.4728 0.0784 40 1 1.5149 8.8818 3.7148 41 1 2.0637 10.1377 2.5794 42 1 0.7539 9.0266 2.1119 43 1 4.6804 8.8477 2.5007 44 1 7.1349 8.5476 4.7395 45 1 4.0184 0.3723 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135695396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:08 Heat of formation + Delta-G solvation = -39.950667 kcal Electronic energy + Delta-G solvation = -27694.174820 eV Core-core repulsion = 23738.523146 eV Total energy + Delta-G solvation = -3955.651674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.63436 -39.47385 -37.64461 -36.56611 -36.16807 -34.39149 -32.27455 -31.59750 -30.78971 -29.83040 -28.54355 -27.71236 -26.27879 -23.86967 -23.51767 -22.86851 -21.19319 -20.27459 -19.67592 -18.70793 -17.64424 -17.03451 -16.76773 -16.16232 -15.62110 -15.34911 -14.82754 -14.68374 -14.38150 -14.31990 -13.81678 -13.77527 -13.63952 -13.24536 -12.91188 -12.81544 -12.59412 -12.47352 -12.10987 -11.98686 -11.88866 -11.69418 -11.58729 -11.37354 -11.06733 -10.99824 -10.88301 -10.76220 -10.55086 -10.36648 -10.19411 -9.85717 -9.55750 -9.20398 -9.07380 -8.81417 -8.69607 -8.45229 -6.86031 -5.66773 -2.94499 0.68658 0.92291 2.07156 2.92134 2.95537 3.44796 3.50455 3.55532 3.55764 3.78575 4.33563 4.59206 4.67229 4.68059 4.76302 4.80565 4.93302 5.07988 5.09752 5.18815 5.45435 5.48134 5.53231 5.66845 5.72218 5.74378 5.90007 5.93033 5.94543 6.00045 6.05231 6.11836 6.17882 6.32738 6.41303 6.48724 6.61210 6.77733 6.86177 6.93028 6.98581 7.11083 7.77672 7.85119 8.51585 8.61761 9.63002 10.20224 10.54338 11.55955 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009504 B = 0.003694 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.288560 B = 7577.781056 C = 8151.964895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.159 3.841 4 C -0.215 4.215 5 C -0.033 4.033 6 C -0.158 4.158 7 C 0.555 3.445 8 O -0.508 6.508 9 N -0.713 5.713 10 C 0.146 3.854 11 H 0.107 0.893 12 C -0.160 4.160 13 C -0.131 4.131 14 C 0.172 3.828 15 H 0.045 0.955 16 C -0.165 4.165 17 N -0.719 5.719 18 C -0.234 4.234 19 H 0.066 0.934 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.901 3.099 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.288 1.288 26 C 0.053 3.947 27 Cl -0.017 7.017 28 C -0.158 4.158 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.390 0.610 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.045 0.955 42 H 0.033 0.967 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.409 -12.507 -14.132 23.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.113 3.887 4 C -0.234 4.234 5 C -0.052 4.052 6 C -0.162 4.162 7 C 0.341 3.659 8 O -0.383 6.383 9 N -0.365 5.365 10 C 0.042 3.958 11 H 0.125 0.875 12 C -0.219 4.219 13 C -0.169 4.169 14 C 0.062 3.938 15 H 0.063 0.937 16 C -0.226 4.226 17 N -0.361 5.361 18 C -0.366 4.366 19 H 0.084 0.916 20 C -0.206 4.206 21 N -0.580 5.580 22 Si 0.732 3.268 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.215 1.215 26 C 0.024 3.976 27 Cl 0.013 6.987 28 C -0.177 4.177 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.224 0.776 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.253 -12.735 -13.975 23.089 hybrid contribution -0.344 -0.203 0.951 1.031 sum -13.597 -12.938 -13.025 22.845 Atomic orbital electron populations 1.23152 0.77762 1.04326 1.01773 1.86047 1.21876 1.26518 1.87951 1.18970 0.91621 0.84452 0.93677 1.21215 1.00553 0.91860 1.09765 1.21051 0.92607 0.97815 0.93753 1.19836 0.93395 0.93627 1.09387 1.17828 0.87213 0.83492 0.77374 1.90895 1.12770 1.86853 1.47823 1.45853 1.09351 1.05812 1.75454 1.21028 0.98091 0.80876 0.95838 0.87469 1.22181 1.01068 1.01737 0.96896 1.22173 0.98595 0.98764 0.97415 1.20211 0.88351 0.96469 0.88788 0.93718 1.22466 0.98122 1.00812 1.01166 1.42372 1.13555 1.54171 1.26005 1.19092 0.99190 1.19349 0.98938 0.91645 1.24669 0.96614 1.00178 0.99146 1.69633 1.06343 1.41645 1.40343 0.86358 0.76832 0.79839 0.83734 1.21326 1.21719 1.21471 1.20684 0.87161 0.92617 0.97112 1.98444 1.06099 1.98477 1.95710 1.20166 0.91718 0.97390 1.08448 0.87942 0.92155 0.92284 0.84387 0.84436 0.77591 0.92433 0.93265 0.91770 0.90600 0.92173 0.92950 0.93540 0.94800 0.78333 0.93576 0.83637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.94 10.48 -18.84 -0.20 -3.14 16 3 C 0.16 1.71 6.69 -39.03 -0.26 1.45 16 4 C -0.22 -2.02 9.01 -39.49 -0.36 -2.38 16 5 C -0.03 -0.36 9.53 -39.22 -0.37 -0.73 16 6 C -0.16 -2.29 5.88 -104.93 -0.62 -2.91 16 7 C 0.56 9.56 7.72 -12.47 -0.10 9.46 16 8 O -0.51 -10.73 13.62 5.29 0.07 -10.66 16 9 N -0.71 -10.55 4.40 -54.85 -0.24 -10.79 16 10 C 0.15 2.36 2.52 -67.93 -0.17 2.19 16 11 H 0.11 2.30 7.05 -51.93 -0.37 1.93 16 12 C -0.16 -2.22 9.48 37.16 0.35 -1.87 16 13 C -0.13 -1.98 4.29 -26.73 -0.11 -2.09 16 14 C 0.17 3.24 2.84 -67.93 -0.19 3.05 16 15 H 0.04 0.86 7.56 -51.93 -0.39 0.47 16 16 C -0.17 -2.87 9.49 37.16 0.35 -2.52 16 17 N -0.72 -17.74 4.49 -53.43 -0.24 -17.98 16 18 C -0.23 -6.57 9.93 -15.06 -0.15 -6.72 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 22 Si 0.90 23.27 29.55 -169.99 -5.02 18.25 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 26 C 0.05 0.77 6.35 -39.10 -0.25 0.52 16 27 Cl -0.02 -0.28 26.01 -51.86 -1.35 -1.63 16 28 C -0.16 -1.93 9.75 -39.46 -0.38 -2.31 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 31 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 32 H 0.14 0.87 6.27 -52.49 -0.33 0.54 16 33 H 0.14 1.11 6.39 -52.49 -0.34 0.77 16 34 H 0.39 4.48 6.63 -40.82 -0.27 4.21 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 44 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 45 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 386.20 15.07 5.82 5.82 Total: -1.00 -34.58 386.20 -8.38 -42.96 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.58 Total: 9.35 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -1.36 Total: -4.12 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.24 Total: -56.83 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.13 Total: -13.80 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.25 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.35 Total: -1.63 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.58 -8.38 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135695396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.011 kcal (2) G-P(sol) polarization free energy of solvation -34.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds