Wall clock time and date at job start Wed Apr 1 2020 00:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35711 * 116.99687 * 2 1 4 4 C 1.39057 * 119.90043 * 0.02613 * 3 2 1 5 5 C 1.37645 * 120.12570 * 179.71768 * 4 3 2 6 6 C 1.39784 * 119.92138 * 0.50601 * 5 4 3 7 7 C 1.47530 * 120.10245 * 179.76487 * 6 5 4 8 8 O 1.21588 * 120.00485 * 179.72473 * 7 6 5 9 9 N 1.34784 * 119.99631 * 359.72747 * 7 6 5 10 10 C 1.46494 * 119.99635 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47431 * 324.99476 * 10 9 7 12 12 C 1.53001 * 109.47305 * 85.00093 * 10 9 7 13 13 C 1.53003 * 109.47057 * 205.00313 * 10 9 7 14 14 C 1.53000 * 109.47314 * 64.99789 * 13 10 9 15 15 H 1.09003 * 109.47270 * 305.00088 * 14 13 10 16 16 C 1.52998 * 109.46929 * 185.00476 * 14 13 10 17 17 N 1.46494 * 109.46955 * 65.00331 * 14 13 10 18 18 C 1.36936 * 119.99853 * 204.99795 * 17 14 13 19 19 H 1.08001 * 120.00108 * 0.02562 * 18 17 14 20 20 C 1.38817 * 119.99764 * 179.97438 * 18 17 14 21 21 N 1.31613 * 119.99906 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99904 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46884 * 60.00296 * 22 20 18 24 24 H 1.48492 * 109.47244 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47027 * 300.00399 * 22 20 18 26 26 C 1.39852 * 119.80286 * 359.49524 * 6 5 4 27 27 Cl 1.73597 * 120.06867 * 180.27404 * 26 6 5 28 28 C 1.37899 * 119.87075 * 0.25152 * 26 6 5 29 29 H 1.09005 * 109.46781 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47044 * 299.99519 * 1 2 3 31 31 H 1.09005 * 109.47166 * 60.00159 * 1 2 3 32 32 H 1.08000 * 119.94155 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.04524 * 180.25200 * 5 4 3 34 34 H 0.96995 * 120.00015 * 359.72373 * 9 7 6 35 35 H 1.08991 * 109.46933 * 300.00042 * 12 10 9 36 36 H 1.09000 * 109.46920 * 59.99971 * 12 10 9 37 37 H 1.08996 * 109.46997 * 179.97438 * 12 10 9 38 38 H 1.08999 * 109.47427 * 185.00341 * 13 10 9 39 39 H 1.09010 * 109.47093 * 305.00188 * 13 10 9 40 40 H 1.09006 * 109.47053 * 180.02562 * 16 14 13 41 41 H 1.09002 * 109.47057 * 299.99384 * 16 14 13 42 42 H 1.08998 * 109.47605 * 59.99843 * 16 14 13 43 43 H 0.97001 * 120.00176 * 25.00565 * 17 14 13 44 44 H 0.97009 * 119.99792 * 179.97438 * 21 20 18 45 45 H 1.08007 * 119.96187 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2856 2.3741 0.0005 5 6 1.9056 3.6030 0.0064 6 6 3.3014 3.6798 0.0011 7 6 3.9700 4.9949 0.0022 8 8 5.1842 5.0597 0.0026 9 7 3.2349 6.1246 0.0026 10 6 3.8988 7.4305 0.0042 11 1 4.8135 7.3724 0.5943 12 6 4.2430 7.8294 -1.4322 13 6 2.9642 8.4771 0.6142 14 6 2.7197 8.1455 2.0877 15 1 2.3448 7.1256 2.1733 16 6 1.6888 9.1177 2.6649 17 7 3.9762 8.2680 2.8308 18 6 4.1565 7.5643 3.9916 19 1 3.3726 6.9186 4.3590 20 6 5.3474 7.6800 4.6955 21 7 6.3029 8.4664 4.2474 22 14 5.5937 6.7194 6.2786 23 1 5.4828 5.2654 5.9977 24 1 6.9390 7.0157 6.8331 25 1 4.5549 7.1139 7.2636 26 6 4.0621 2.5063 0.0006 27 17 5.7959 2.5937 0.0012 28 6 3.4323 1.2796 0.0000 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2073 2.3145 0.0006 33 1 1.3145 4.5068 0.0110 34 1 2.2663 6.0730 -0.0017 35 1 4.9088 7.0838 -1.8667 36 1 3.3284 7.8876 -2.0222 37 1 4.7366 8.8012 -1.4310 38 1 3.4217 9.4632 0.5347 39 1 2.0149 8.4728 0.0784 40 1 1.5149 8.8818 3.7148 41 1 2.0637 10.1377 2.5794 42 1 0.7539 9.0266 2.1119 43 1 4.6804 8.8477 2.5007 44 1 7.1349 8.5476 4.7395 45 1 4.0184 0.3723 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135695396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:07 Heat of formation + Delta-G solvation = -63.365036 kcal Electronic energy + Delta-G solvation = -27695.190144 eV Core-core repulsion = 23738.523146 eV Total energy + Delta-G solvation = -3956.666997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.55413 -40.56097 -38.69880 -37.95978 -37.23725 -36.00038 -34.02919 -32.81547 -31.80137 -30.90580 -30.33193 -28.26191 -27.55432 -25.65365 -24.78321 -23.79572 -22.35566 -21.56438 -21.14526 -19.57540 -19.24630 -18.52913 -17.68567 -16.91524 -16.78182 -16.53644 -16.23943 -15.94924 -15.71226 -15.60105 -15.32253 -15.01675 -14.67013 -14.44842 -14.32504 -13.97127 -13.81416 -13.56032 -13.31806 -13.12969 -13.09209 -12.90784 -12.76548 -12.75397 -12.64133 -12.30478 -12.23732 -12.14685 -11.93827 -11.86565 -11.77341 -11.52236 -11.38241 -10.88572 -10.51732 -10.02001 -9.95031 -9.37592 -8.91933 -7.90200 -5.14745 -0.28770 0.04998 1.04258 1.41715 1.45873 1.50289 1.86759 2.19620 2.35779 2.57375 2.69711 3.44591 3.55107 3.73590 3.86448 3.90776 4.00708 4.05379 4.18159 4.20040 4.39612 4.45257 4.45742 4.58749 4.62028 4.73020 4.79951 4.82611 4.83713 4.87143 4.98046 5.02885 5.06548 5.09711 5.13932 5.28823 5.31844 5.39648 5.46928 5.54097 5.67107 5.72106 6.24118 6.33174 6.69137 7.39025 7.41213 8.20499 8.39151 9.33593 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009504 B = 0.003694 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.288560 B = 7577.781056 C = 8151.964895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.323 6.323 3 C 0.167 3.833 4 C -0.201 4.201 5 C -0.023 4.023 6 C -0.186 4.186 7 C 0.546 3.454 8 O -0.562 6.562 9 N -0.699 5.699 10 C 0.149 3.851 11 H 0.046 0.954 12 C -0.150 4.150 13 C -0.117 4.117 14 C 0.164 3.836 15 H 0.044 0.956 16 C -0.156 4.156 17 N -0.731 5.731 18 C -0.224 4.224 19 H 0.069 0.931 20 C -0.077 4.077 21 N -0.969 5.969 22 Si 0.958 3.042 23 H -0.288 1.288 24 H -0.298 1.298 25 H -0.274 1.274 26 C 0.033 3.967 27 Cl -0.050 7.050 28 C -0.168 4.168 29 H 0.121 0.879 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.180 0.820 33 H 0.170 0.830 34 H 0.409 0.591 35 H 0.035 0.965 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.028 0.972 41 H 0.040 0.960 42 H 0.079 0.921 43 H 0.369 0.631 44 H 0.246 0.754 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.270 -13.146 -15.067 27.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.236 6.236 3 C 0.119 3.881 4 C -0.220 4.220 5 C -0.041 4.041 6 C -0.191 4.191 7 C 0.334 3.666 8 O -0.441 6.441 9 N -0.352 5.352 10 C 0.044 3.956 11 H 0.064 0.936 12 C -0.208 4.208 13 C -0.155 4.155 14 C 0.056 3.944 15 H 0.062 0.938 16 C -0.216 4.216 17 N -0.371 5.371 18 C -0.356 4.356 19 H 0.087 0.913 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.788 3.212 23 H -0.215 1.215 24 H -0.224 1.224 25 H -0.200 1.200 26 C 0.005 3.995 27 Cl -0.021 7.021 28 C -0.188 4.188 29 H 0.139 0.861 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.197 0.803 33 H 0.187 0.813 34 H 0.247 0.753 35 H 0.054 0.946 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.128 0.872 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.201 0.799 44 H 0.055 0.945 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.231 -13.384 -14.924 27.097 hybrid contribution 0.941 -0.131 1.170 1.508 sum -17.290 -13.515 -13.754 25.899 Atomic orbital electron populations 1.23544 0.75275 1.06230 1.03182 1.86055 1.24397 1.25830 1.87330 1.19065 0.91117 0.85669 0.92209 1.21624 1.02426 0.90466 1.07461 1.21381 0.90876 0.99819 0.92073 1.19788 0.95085 0.91854 1.12342 1.18375 0.86873 0.84939 0.76429 1.90867 1.15149 1.87684 1.50367 1.45689 1.10204 1.04789 1.74531 1.20811 0.96259 0.82004 0.96506 0.93596 1.22071 1.02242 1.01119 0.95403 1.22082 1.00539 0.97965 0.94960 1.20532 0.86291 0.97015 0.90599 0.93812 1.22308 0.99409 0.99633 1.00207 1.42596 1.15455 1.53451 1.25644 1.19457 0.98648 1.18095 0.99401 0.91270 1.25391 0.96976 1.02058 1.02476 1.69788 1.06648 1.43930 1.41697 0.85434 0.76591 0.78339 0.80842 1.21486 1.22421 1.19958 1.20852 0.85688 0.93884 0.99075 1.98421 1.09023 1.98585 1.96075 1.20242 0.93007 0.96670 1.08861 0.86094 0.90969 0.90462 0.80284 0.81270 0.75315 0.94582 0.89818 0.91344 0.90667 0.87245 0.95280 0.94058 0.90248 0.79906 0.94476 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.32 -5.13 10.48 -90.32 -0.95 -6.08 16 3 C 0.17 3.15 6.69 22.63 0.15 3.30 16 4 C -0.20 -2.94 9.01 22.33 0.20 -2.74 16 5 C -0.02 -0.42 9.53 22.50 0.21 -0.20 16 6 C -0.19 -5.31 5.88 -20.06 -0.12 -5.43 16 7 C 0.55 19.18 7.72 86.69 0.67 19.85 16 8 O -0.56 -25.34 13.62 -3.99 -0.05 -25.39 16 9 N -0.70 -19.85 4.40 -445.70 -1.96 -21.81 16 10 C 0.15 4.76 2.52 44.99 0.11 4.88 16 11 H 0.05 2.08 7.05 -2.39 -0.02 2.06 16 12 C -0.15 -4.00 9.48 71.98 0.68 -3.31 16 13 C -0.12 -3.23 4.29 30.60 0.13 -3.10 16 14 C 0.16 5.87 2.84 44.99 0.13 6.00 16 15 H 0.04 1.59 7.56 -2.39 -0.02 1.57 16 16 C -0.16 -4.94 9.49 71.98 0.68 -4.26 16 17 N -0.73 -36.53 4.49 -322.95 -1.45 -37.98 16 18 C -0.22 -12.71 9.93 84.03 0.83 -11.87 16 19 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 20 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 21 N -0.97 -62.25 13.06 21.65 0.28 -61.97 16 22 Si 0.96 48.96 29.55 68.60 2.03 50.99 16 23 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 24 H -0.30 -15.41 7.11 99.48 0.71 -14.70 16 25 H -0.27 -13.18 7.11 99.48 0.71 -12.48 16 26 C 0.03 0.99 6.35 22.58 0.14 1.13 16 27 Cl -0.05 -1.78 26.01 -2.72 -0.07 -1.85 16 28 C -0.17 -4.05 9.75 22.35 0.22 -3.83 16 29 H 0.12 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.07 0.32 7.65 -2.39 -0.02 0.30 16 31 H 0.08 0.24 7.65 -2.38 -0.02 0.22 16 32 H 0.18 1.13 6.27 -2.91 -0.02 1.11 16 33 H 0.17 1.88 6.39 -2.91 -0.02 1.86 16 34 H 0.41 8.01 6.63 -92.71 -0.61 7.39 16 35 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.37 20.26 7.80 -92.71 -0.72 19.54 16 44 H 0.25 15.56 8.31 -92.70 -0.77 14.79 16 45 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -81.98 386.20 3.14 -78.83 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: -0.32 Total: 27.82 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 5.63 Total: -2.57 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -3.13 Total: -121.76 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -1.00 Total: -31.47 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 2.03 Total: 50.99 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.07 Total: -1.85 kcal Total: -81.98 3.14 -78.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135695396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.469 kcal (2) G-P(sol) polarization free energy of solvation -81.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds