Wall clock time and date at job start Wed Apr 1 2020 00:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35712 * 116.99746 * 2 1 4 4 C 1.39050 * 119.90409 * 0.02562 * 3 2 1 5 5 C 1.37652 * 120.12954 * 179.71699 * 4 3 2 6 6 C 1.39783 * 119.91824 * 0.50844 * 5 4 3 7 7 C 1.47524 * 120.09594 * 179.76740 * 6 5 4 8 8 O 1.21598 * 119.99666 * 179.72770 * 7 6 5 9 9 N 1.34771 * 120.00264 * 359.72310 * 7 6 5 10 10 C 1.46508 * 119.99837 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47317 * 35.00152 * 10 9 7 12 12 C 1.52999 * 109.46657 * 274.99636 * 10 9 7 13 13 C 1.53002 * 109.46662 * 155.00121 * 10 9 7 14 14 C 1.53003 * 109.47269 * 294.99336 * 13 10 9 15 15 H 1.09000 * 109.46953 * 305.00936 * 14 13 10 16 16 C 1.52996 * 109.47332 * 185.00423 * 14 13 10 17 17 N 1.46505 * 109.46807 * 65.00478 * 14 13 10 18 18 C 1.36931 * 119.99788 * 205.00000 * 17 14 13 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 14 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 14 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48508 * 109.46872 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99997 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00044 * 22 20 18 26 26 C 1.39860 * 119.80137 * 359.49305 * 6 5 4 27 27 Cl 1.73595 * 120.05965 * 180.27391 * 26 6 5 28 28 C 1.37894 * 119.87409 * 0.24782 * 26 6 5 29 29 H 1.08998 * 109.47264 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47201 * 300.00259 * 1 2 3 31 31 H 1.09006 * 109.47210 * 59.99442 * 1 2 3 32 32 H 1.08005 * 119.93844 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.04002 * 180.25449 * 5 4 3 34 34 H 0.96999 * 120.00044 * 0.02562 * 9 7 6 35 35 H 1.09010 * 109.46692 * 179.97438 * 12 10 9 36 36 H 1.08998 * 109.47359 * 299.99941 * 12 10 9 37 37 H 1.09002 * 109.46944 * 60.00616 * 12 10 9 38 38 H 1.09000 * 109.46766 * 174.99852 * 13 10 9 39 39 H 1.08992 * 109.47398 * 54.99945 * 13 10 9 40 40 H 1.08998 * 109.47099 * 180.02562 * 16 14 13 41 41 H 1.09002 * 109.46807 * 300.00318 * 16 14 13 42 42 H 1.08998 * 109.47019 * 59.99816 * 16 14 13 43 43 H 0.97000 * 119.99792 * 24.99795 * 17 14 13 44 44 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 45 45 H 1.07997 * 119.96071 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2858 2.3741 0.0005 5 6 1.9058 3.6031 0.0064 6 6 3.3015 3.6798 0.0011 7 6 3.9701 4.9949 0.0022 8 8 5.1843 5.0595 0.0026 9 7 3.2351 6.1245 0.0027 10 6 3.8991 7.4305 0.0032 11 1 4.8141 7.3731 -0.5863 12 6 4.2423 7.8274 1.4404 13 6 2.9648 8.4778 -0.6060 14 6 2.7213 8.1483 -2.0801 15 1 3.6775 8.0657 -2.5967 16 6 1.8897 9.2612 -2.7209 17 7 1.9991 6.8778 -2.1836 18 6 2.1035 6.1215 -3.3203 19 1 2.7185 6.4614 -4.1405 20 6 1.4238 4.9150 -3.4160 21 7 0.6747 4.5005 -2.4164 22 14 1.5724 3.8795 -4.9637 23 1 2.4672 4.5627 -5.9323 24 1 2.1385 2.5510 -4.6180 25 1 0.2291 3.7023 -5.5715 26 6 4.0622 2.5062 0.0006 27 17 5.7960 2.5937 0.0012 28 6 3.4324 1.2795 0.0001 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 0.2074 2.3146 0.0005 33 1 1.3146 4.5069 0.0110 34 1 2.2665 6.0729 0.0027 35 1 4.7368 8.7989 1.4408 36 1 3.3272 7.8849 2.0298 37 1 4.9079 7.0812 1.8744 38 1 3.4224 9.4638 -0.5249 39 1 2.0153 8.4728 -0.0708 40 1 1.7159 9.0262 -3.7710 41 1 0.9335 9.3437 -2.2042 42 1 2.4270 10.2065 -2.6439 43 1 1.4471 6.5724 -1.4468 44 1 0.1995 3.6576 -2.4834 45 1 4.0184 0.3723 -0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135695397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:10 Heat of formation + Delta-G solvation = -33.503544 kcal Electronic energy + Delta-G solvation = -29034.897647 eV Core-core repulsion = 25079.525542 eV Total energy + Delta-G solvation = -3955.372106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.03690 -39.09526 -37.26984 -36.39066 -35.69277 -34.11942 -32.38012 -31.15109 -30.30243 -29.46874 -28.50202 -27.19174 -26.31451 -23.70248 -23.24669 -22.28136 -20.85814 -20.22729 -19.58242 -18.07793 -17.20509 -16.98734 -16.26690 -15.61658 -15.50072 -14.80726 -14.69764 -14.36042 -14.11512 -13.89779 -13.66329 -13.55286 -13.14644 -12.95365 -12.73049 -12.46670 -12.28629 -12.10288 -11.94585 -11.82572 -11.73241 -11.65114 -11.47461 -11.03353 -10.86466 -10.81561 -10.71564 -10.46666 -10.39990 -10.32886 -10.23629 -9.90399 -9.70827 -8.99088 -8.81933 -8.40465 -8.29254 -7.85393 -6.95401 -5.86623 -3.07742 1.33104 1.70084 2.52804 3.40262 3.47766 3.49087 3.49955 3.50150 3.88043 4.38084 4.56827 5.04241 5.11075 5.22031 5.26059 5.34664 5.37759 5.45831 5.53730 5.55477 5.56022 5.61978 5.70674 5.82836 5.89484 5.99651 6.02055 6.14633 6.19688 6.24424 6.33182 6.38648 6.47182 6.57476 6.60728 6.66200 6.79060 6.85037 6.87597 7.04571 7.25345 7.53938 7.67962 8.27272 8.35012 9.02257 9.46893 9.99340 10.35494 11.36162 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009091 B = 0.005813 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3079.320772 B = 4815.702214 C = 6417.998515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.153 3.847 4 C -0.205 4.205 5 C 0.033 3.967 6 C -0.167 4.167 7 C 0.571 3.429 8 O -0.544 6.544 9 N -0.696 5.696 10 C 0.152 3.848 11 H 0.083 0.917 12 C -0.162 4.162 13 C -0.133 4.133 14 C 0.169 3.831 15 H 0.048 0.952 16 C -0.163 4.163 17 N -0.715 5.715 18 C -0.218 4.218 19 H 0.067 0.933 20 C -0.008 4.008 21 N -0.928 5.928 22 Si 0.896 3.104 23 H -0.283 1.283 24 H -0.292 1.292 25 H -0.295 1.295 26 C 0.052 3.948 27 Cl -0.041 7.041 28 C -0.177 4.177 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.133 0.867 33 H 0.147 0.853 34 H 0.400 0.600 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.035 0.965 43 H 0.376 0.624 44 H 0.252 0.748 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.440 -0.927 9.097 9.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.107 3.893 4 C -0.224 4.224 5 C 0.013 3.987 6 C -0.171 4.171 7 C 0.359 3.641 8 O -0.423 6.423 9 N -0.349 5.349 10 C 0.047 3.953 11 H 0.102 0.898 12 C -0.220 4.220 13 C -0.172 4.172 14 C 0.059 3.941 15 H 0.066 0.934 16 C -0.223 4.223 17 N -0.357 5.357 18 C -0.349 4.349 19 H 0.085 0.915 20 C -0.203 4.203 21 N -0.577 5.577 22 Si 0.729 3.271 23 H -0.209 1.209 24 H -0.219 1.219 25 H -0.222 1.222 26 C 0.024 3.976 27 Cl -0.011 7.011 28 C -0.196 4.196 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.164 0.836 34 H 0.239 0.761 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.211 0.789 44 H 0.062 0.938 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.703 -1.095 8.902 8.996 hybrid contribution -0.915 -0.678 -1.036 1.540 sum -0.212 -1.773 7.866 8.066 Atomic orbital electron populations 1.23076 0.78200 1.03573 1.01957 1.85970 1.21574 1.27108 1.88415 1.18970 0.91532 0.84344 0.94441 1.21121 1.00322 0.91745 1.09219 1.21070 0.91880 0.98234 0.87502 1.19619 0.93696 0.92746 1.11030 1.17782 0.86649 0.83814 0.75903 1.90774 1.13218 1.87448 1.50843 1.45856 1.10221 1.04637 1.74225 1.20770 0.96665 0.82484 0.95393 0.89850 1.22207 1.01361 1.01210 0.97248 1.22208 0.99308 0.97903 0.97785 1.20294 0.94812 0.86951 0.92042 0.93363 1.22410 1.00192 0.97987 1.01702 1.42445 1.55695 1.19301 1.18295 1.19252 1.22363 0.99481 0.93838 0.91499 1.24455 1.00435 0.97791 0.97661 1.69510 1.34913 1.22648 1.30623 0.86257 0.76925 0.80739 0.83228 1.20860 1.21915 1.22211 1.20524 0.85569 0.92905 0.98616 1.98374 1.08035 1.98559 1.96155 1.19904 0.91625 0.96863 1.11221 0.88549 0.92504 0.92071 0.84903 0.83576 0.76138 0.92264 0.92931 0.92299 0.90850 0.91848 0.92910 0.93648 0.94583 0.78918 0.93807 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.76 10.48 -18.84 -0.20 -4.96 16 3 C 0.15 2.58 6.69 -39.03 -0.26 2.32 16 4 C -0.21 -3.46 9.01 -39.49 -0.36 -3.81 16 5 C 0.03 0.60 7.82 -39.22 -0.31 0.30 16 6 C -0.17 -3.29 5.88 -104.93 -0.62 -3.90 16 7 C 0.57 11.59 7.72 -12.48 -0.10 11.49 16 8 O -0.54 -12.04 13.62 5.28 0.07 -11.97 16 9 N -0.70 -12.40 3.75 -54.85 -0.21 -12.61 16 10 C 0.15 2.42 2.57 -67.93 -0.17 2.24 16 11 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 12 C -0.16 -2.17 9.48 37.16 0.35 -1.82 16 13 C -0.13 -1.94 4.43 -26.73 -0.12 -2.06 16 14 C 0.17 3.04 2.89 -67.93 -0.20 2.84 16 15 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 16 C -0.16 -2.70 9.49 37.16 0.35 -2.35 16 17 N -0.71 -15.37 3.84 -53.42 -0.21 -15.58 16 18 C -0.22 -5.50 9.93 -15.06 -0.15 -5.65 16 19 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 21 N -0.93 -22.87 10.73 55.49 0.60 -22.27 16 22 Si 0.90 21.79 29.55 -169.99 -5.02 16.77 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 C 0.05 0.99 6.35 -39.10 -0.25 0.75 16 27 Cl -0.04 -0.76 26.01 -51.86 -1.35 -2.11 16 28 C -0.18 -3.08 9.75 -39.46 -0.38 -3.46 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 31 H 0.06 0.70 7.65 -51.93 -0.40 0.31 16 32 H 0.13 1.98 6.27 -52.48 -0.33 1.65 16 33 H 0.15 2.68 5.85 -52.49 -0.31 2.38 16 34 H 0.40 7.04 4.53 -40.82 -0.18 6.85 16 35 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.38 8.14 5.70 -40.82 -0.23 7.90 16 44 H 0.25 6.21 8.31 -40.82 -0.34 5.87 16 45 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 377.43 15.07 5.69 5.69 Total: -1.00 -28.14 377.43 -8.37 -36.51 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -6.44 Total: 12.67 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -1.31 Total: -2.14 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.18 Total: -50.46 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.13 Total: -16.93 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.35 Total: -2.11 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.14 -8.37 -36.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135695397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.010 kcal (2) G-P(sol) polarization free energy of solvation -28.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds