Wall clock time and date at job start Wed Apr 1 2020 00:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35916 * 117.00072 * 2 1 4 4 C 1.38830 * 119.97511 * 359.97438 * 3 2 1 5 5 C 1.38355 * 120.22345 * 179.97438 * 4 3 2 6 6 Cl 1.73599 * 119.90907 * 180.02562 * 5 4 3 7 7 C 1.38125 * 120.18178 * 0.02562 * 5 4 3 8 8 C 1.39549 * 119.95493 * 0.02562 * 7 5 4 9 9 C 1.47862 * 120.11703 * 179.97438 * 8 7 5 10 10 O 1.21543 * 119.99987 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99828 * 0.02562 * 9 8 7 12 12 C 1.46495 * 119.99718 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47210 * 324.99916 * 12 11 9 14 14 C 1.52999 * 109.47389 * 85.00140 * 12 11 9 15 15 C 1.53006 * 109.46696 * 204.99517 * 12 11 9 16 16 C 1.52997 * 109.46841 * 65.00499 * 15 12 11 17 17 H 1.09005 * 109.47159 * 54.99606 * 16 15 12 18 18 C 1.52999 * 109.47264 * 174.99605 * 16 15 12 19 19 N 1.46498 * 109.47167 * 294.99436 * 16 15 12 20 20 C 1.36935 * 120.00239 * 154.99975 * 19 16 15 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 16 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 C 1.38460 * 119.97758 * 180.30017 * 3 2 1 29 29 H 1.08994 * 109.47410 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47273 * 300.00072 * 1 2 3 31 31 H 1.09007 * 109.47254 * 59.99808 * 1 2 3 32 32 H 1.07996 * 119.88623 * 0.02562 * 4 3 2 33 33 H 1.07998 * 120.02768 * 180.02562 * 7 5 4 34 34 H 0.96997 * 119.99976 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.47632 * 179.97438 * 14 12 11 36 36 H 1.09000 * 109.47086 * 299.99744 * 14 12 11 37 37 H 1.09007 * 109.47428 * 59.99518 * 14 12 11 38 38 H 1.08996 * 109.47489 * 304.99916 * 15 12 11 39 39 H 1.09001 * 109.46720 * 184.99882 * 15 12 11 40 40 H 1.08994 * 109.47102 * 299.99987 * 18 16 15 41 41 H 1.09005 * 109.47033 * 59.99923 * 18 16 15 42 42 H 1.08994 * 109.47214 * 179.97438 * 18 16 15 43 43 H 0.97004 * 119.99747 * 335.00715 * 19 16 15 44 44 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 45 45 H 1.07997 * 120.09300 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2894 2.3750 -0.0005 5 6 1.9122 3.6105 0.0000 6 17 0.9581 5.0608 0.0000 7 6 3.2909 3.6931 0.0005 8 6 4.0588 2.5279 0.0000 9 6 5.5350 2.6121 0.0000 10 8 6.2018 1.5959 -0.0009 11 7 6.1413 3.8159 0.0010 12 6 7.6038 3.8994 0.0005 13 1 8.0148 3.0790 0.5888 14 6 8.1196 3.8045 -1.4368 15 6 8.0387 5.2331 0.6113 16 6 7.6315 5.2757 2.0854 17 1 8.0415 4.4072 2.6010 18 6 8.1747 6.5536 2.7279 19 7 6.1702 5.2602 2.1890 20 6 5.5693 4.7879 3.3252 21 1 6.1726 4.4272 4.1452 22 6 4.1847 4.7727 3.4232 23 7 3.4496 5.2174 2.4261 24 14 3.3650 4.1290 4.9734 25 1 1.8901 4.2256 4.8301 26 1 3.7501 2.7104 5.1845 27 1 3.8032 4.9394 6.1380 28 6 3.4287 1.2829 -0.0063 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2110 2.3159 -0.0005 33 1 3.7745 4.6588 0.0014 34 1 5.6092 4.6269 0.0014 35 1 9.2078 3.8671 -1.4374 36 1 7.8098 2.8544 -1.8721 37 1 7.7086 4.6249 -2.0253 38 1 7.5565 6.0518 0.0772 39 1 9.1210 5.3340 0.5303 40 1 9.2618 6.5652 2.6508 41 1 7.7646 7.4221 2.2124 42 1 7.8842 6.5842 3.7779 43 1 5.6283 5.5845 1.4527 44 1 3.8752 5.5520 1.6212 45 1 4.0180 0.3779 -0.0116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135765723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:16 Heat of formation + Delta-G solvation = -37.338681 kcal Electronic energy + Delta-G solvation = -28918.015680 eV Core-core repulsion = 24962.477270 eV Total energy + Delta-G solvation = -3955.538410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.15678 -39.21059 -37.27835 -36.75380 -35.64824 -34.34879 -32.62356 -31.15590 -30.39820 -29.54936 -28.22246 -27.17885 -26.41218 -23.74137 -23.51551 -22.15066 -21.01815 -20.38263 -19.80154 -18.24330 -17.43737 -16.46856 -16.02177 -15.86873 -15.64141 -15.42850 -15.01904 -14.44724 -14.34230 -13.92570 -13.63227 -13.55052 -13.42409 -13.11717 -13.06804 -12.67977 -12.22382 -12.18189 -11.99773 -11.76419 -11.63622 -11.59573 -11.57259 -11.11907 -10.93575 -10.75415 -10.50205 -10.48236 -10.44637 -10.34967 -10.13916 -9.96689 -9.42295 -9.14553 -8.97121 -8.58174 -8.39043 -7.88361 -6.97150 -6.04608 -3.04233 1.15199 1.69511 2.61241 3.26048 3.32897 3.53508 3.56897 3.72305 3.76590 4.24823 4.67562 4.92726 5.04114 5.06467 5.18179 5.26825 5.34063 5.38843 5.42773 5.49726 5.56037 5.61249 5.62500 5.64858 5.79083 5.89428 5.90957 5.93116 6.05789 6.15949 6.29476 6.33764 6.37619 6.44707 6.49729 6.57065 6.63603 6.77881 6.78825 6.97421 7.05105 7.50868 7.83029 8.03153 8.73600 8.75133 9.19614 10.04122 10.20179 11.37653 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009668 B = 0.005321 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.564912 B = 5261.174616 C = 6475.156873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.116 3.884 4 C -0.185 4.185 5 C 0.021 3.979 6 Cl -0.058 7.058 7 C -0.059 4.059 8 C -0.086 4.086 9 C 0.574 3.426 10 O -0.552 6.552 11 N -0.694 5.694 12 C 0.150 3.850 13 H 0.086 0.914 14 C -0.163 4.163 15 C -0.135 4.135 16 C 0.175 3.825 17 H 0.049 0.951 18 C -0.162 4.162 19 N -0.726 5.726 20 C -0.319 4.319 21 H 0.060 0.940 22 C -0.038 4.038 23 N -0.921 5.921 24 Si 1.068 2.932 25 H -0.285 1.285 26 H -0.299 1.299 27 H -0.299 1.299 28 C -0.094 4.094 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.398 0.602 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.036 0.964 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.358 0.642 44 H 0.247 0.753 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.376 -2.578 -8.857 9.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.071 3.929 4 C -0.205 4.205 5 C -0.006 4.006 6 Cl -0.029 7.029 7 C -0.080 4.080 8 C -0.090 4.090 9 C 0.361 3.639 10 O -0.432 6.432 11 N -0.346 5.346 12 C 0.045 3.955 13 H 0.104 0.896 14 C -0.221 4.221 15 C -0.174 4.174 16 C 0.065 3.935 17 H 0.067 0.933 18 C -0.223 4.223 19 N -0.370 5.370 20 C -0.450 4.450 21 H 0.078 0.922 22 C -0.236 4.236 23 N -0.567 5.567 24 Si 0.900 3.100 25 H -0.211 1.211 26 H -0.226 1.226 27 H -0.227 1.227 28 C -0.114 4.114 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.236 0.764 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.193 0.807 44 H 0.060 0.940 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.233 -3.688 -7.906 9.005 hybrid contribution 0.692 1.189 -0.473 1.455 sum -1.542 -2.498 -8.379 8.879 Atomic orbital electron populations 1.23038 0.78700 1.03659 1.01440 1.86071 1.21104 1.26396 1.89286 1.18494 0.91708 0.83744 0.98987 1.21111 1.00274 0.90871 1.08207 1.20220 0.91646 0.87151 1.01554 1.98356 1.71483 1.36443 1.96596 1.20984 0.91731 0.98249 0.97025 1.19509 0.93200 0.92782 1.03497 1.17889 0.86800 0.83572 0.75633 1.90694 1.66046 1.35102 1.51334 1.45871 1.07020 1.08053 1.73626 1.20842 0.80189 0.98745 0.95675 0.89635 1.22211 1.00805 1.02115 0.96966 1.22241 1.01102 0.96150 0.97890 1.20218 0.85842 0.95611 0.91834 0.93258 1.22399 0.98195 0.99853 1.01817 1.42459 0.99748 1.76671 1.18155 1.19959 0.92470 1.37882 0.94651 0.92206 1.25434 0.92370 1.01423 1.04386 1.71111 1.35981 1.44140 1.05420 0.83372 0.76425 0.75506 0.74647 1.21082 1.22643 1.22712 1.20353 0.91047 0.98170 1.01837 0.88413 0.92530 0.92773 0.84828 0.84669 0.76391 0.91973 0.92234 0.92784 0.91885 0.90568 0.94490 0.93778 0.92803 0.80740 0.94017 0.84116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.76 10.49 -19.47 -0.20 -4.97 16 3 C 0.12 1.97 6.68 -39.28 -0.26 1.71 16 4 C -0.18 -3.05 8.81 -39.32 -0.35 -3.40 16 5 C 0.02 0.39 6.31 -39.58 -0.25 0.14 16 6 Cl -0.06 -1.01 28.95 -51.86 -1.50 -2.51 16 7 C -0.06 -1.13 7.61 -39.13 -0.30 -1.43 16 8 C -0.09 -1.69 5.87 -104.99 -0.62 -2.30 16 9 C 0.57 11.58 7.74 -12.32 -0.10 11.49 16 10 O -0.55 -12.31 16.01 5.33 0.09 -12.22 16 11 N -0.69 -12.36 3.75 -54.75 -0.21 -12.57 16 12 C 0.15 2.38 2.57 -67.93 -0.17 2.21 16 13 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 14 C -0.16 -2.14 9.48 37.16 0.35 -1.79 16 15 C -0.14 -1.98 4.43 -26.73 -0.12 -2.10 16 16 C 0.17 3.22 2.89 -67.93 -0.20 3.02 16 17 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 18 C -0.16 -2.78 9.49 37.16 0.35 -2.42 16 19 N -0.73 -15.96 3.84 -53.43 -0.21 -16.16 16 20 C -0.32 -8.23 9.93 -15.06 -0.15 -8.38 16 21 H 0.06 1.61 7.83 -52.48 -0.41 1.20 16 22 C -0.04 -1.00 5.50 -17.43 -0.10 -1.09 16 23 N -0.92 -23.81 12.26 55.49 0.68 -23.12 16 24 Si 1.07 25.52 29.92 -169.99 -5.09 20.44 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16 28 C -0.09 -1.77 9.53 -39.02 -0.37 -2.14 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.58 7.66 -51.93 -0.40 0.19 16 31 H 0.05 0.50 7.66 -51.92 -0.40 0.10 16 32 H 0.13 1.85 6.28 -52.49 -0.33 1.52 16 33 H 0.14 2.60 4.73 -52.49 -0.25 2.35 16 34 H 0.40 7.02 4.54 -40.82 -0.19 6.83 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.36 7.82 4.54 -40.82 -0.19 7.64 16 44 H 0.25 6.14 4.78 -40.82 -0.20 5.95 16 45 H 0.14 2.61 7.65 -52.49 -0.40 2.21 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -29.34 377.80 -8.19 -37.53 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -6.16 Total: 13.10 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -1.28 Total: -5.21 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: 0.27 Total: -51.86 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.12 Total: -17.19 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.09 Total: 20.44 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.34 -8.19 -37.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135765723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.192 kcal (2) G-P(sol) polarization free energy of solvation -29.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds