Wall clock time and date at job start Wed Apr 1 2020 00:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35916 * 117.00072 * 2 1 4 4 C 1.38830 * 119.97511 * 359.97438 * 3 2 1 5 5 C 1.38355 * 120.22345 * 179.97438 * 4 3 2 6 6 Cl 1.73599 * 119.90907 * 180.02562 * 5 4 3 7 7 C 1.38125 * 120.18178 * 0.02562 * 5 4 3 8 8 C 1.39549 * 119.95493 * 0.02562 * 7 5 4 9 9 C 1.47862 * 120.11703 * 179.97438 * 8 7 5 10 10 O 1.21543 * 119.99987 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99828 * 0.02562 * 9 8 7 12 12 C 1.46495 * 119.99718 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47210 * 324.99916 * 12 11 9 14 14 C 1.52999 * 109.47389 * 85.00140 * 12 11 9 15 15 C 1.53006 * 109.46696 * 204.99517 * 12 11 9 16 16 C 1.52997 * 109.46841 * 65.00499 * 15 12 11 17 17 H 1.09005 * 109.47159 * 54.99606 * 16 15 12 18 18 C 1.52999 * 109.47264 * 174.99605 * 16 15 12 19 19 N 1.46498 * 109.47167 * 294.99436 * 16 15 12 20 20 C 1.36935 * 120.00239 * 154.99975 * 19 16 15 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 16 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 C 1.38460 * 119.97758 * 180.30017 * 3 2 1 29 29 H 1.08994 * 109.47410 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47273 * 300.00072 * 1 2 3 31 31 H 1.09007 * 109.47254 * 59.99808 * 1 2 3 32 32 H 1.07996 * 119.88623 * 0.02562 * 4 3 2 33 33 H 1.07998 * 120.02768 * 180.02562 * 7 5 4 34 34 H 0.96997 * 119.99976 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.47632 * 179.97438 * 14 12 11 36 36 H 1.09000 * 109.47086 * 299.99744 * 14 12 11 37 37 H 1.09007 * 109.47428 * 59.99518 * 14 12 11 38 38 H 1.08996 * 109.47489 * 304.99916 * 15 12 11 39 39 H 1.09001 * 109.46720 * 184.99882 * 15 12 11 40 40 H 1.08994 * 109.47102 * 299.99987 * 18 16 15 41 41 H 1.09005 * 109.47033 * 59.99923 * 18 16 15 42 42 H 1.08994 * 109.47214 * 179.97438 * 18 16 15 43 43 H 0.97004 * 119.99747 * 335.00715 * 19 16 15 44 44 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 45 45 H 1.07997 * 120.09300 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2894 2.3750 -0.0005 5 6 1.9122 3.6105 0.0000 6 17 0.9581 5.0608 0.0000 7 6 3.2909 3.6931 0.0005 8 6 4.0588 2.5279 0.0000 9 6 5.5350 2.6121 0.0000 10 8 6.2018 1.5959 -0.0009 11 7 6.1413 3.8159 0.0010 12 6 7.6038 3.8994 0.0005 13 1 8.0148 3.0790 0.5888 14 6 8.1196 3.8045 -1.4368 15 6 8.0387 5.2331 0.6113 16 6 7.6315 5.2757 2.0854 17 1 8.0415 4.4072 2.6010 18 6 8.1747 6.5536 2.7279 19 7 6.1702 5.2602 2.1890 20 6 5.5693 4.7879 3.3252 21 1 6.1726 4.4272 4.1452 22 6 4.1847 4.7727 3.4232 23 7 3.4496 5.2174 2.4261 24 14 3.3650 4.1290 4.9734 25 1 1.8901 4.2256 4.8301 26 1 3.7501 2.7104 5.1845 27 1 3.8032 4.9394 6.1380 28 6 3.4287 1.2829 -0.0063 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2110 2.3159 -0.0005 33 1 3.7745 4.6588 0.0014 34 1 5.6092 4.6269 0.0014 35 1 9.2078 3.8671 -1.4374 36 1 7.8098 2.8544 -1.8721 37 1 7.7086 4.6249 -2.0253 38 1 7.5565 6.0518 0.0772 39 1 9.1210 5.3340 0.5303 40 1 9.2618 6.5652 2.6508 41 1 7.7646 7.4221 2.2124 42 1 7.8842 6.5842 3.7779 43 1 5.6283 5.5845 1.4527 44 1 3.8752 5.5520 1.6212 45 1 4.0180 0.3779 -0.0116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135765723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:15 Heat of formation + Delta-G solvation = -53.477274 kcal Electronic energy + Delta-G solvation = -28918.715502 eV Core-core repulsion = 24962.477270 eV Total energy + Delta-G solvation = -3956.238232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.55494 -40.57092 -38.63894 -38.23871 -37.04927 -35.95655 -34.28586 -32.62179 -31.76536 -30.94735 -29.84445 -28.19290 -27.65892 -25.40483 -25.12033 -23.54174 -22.37982 -21.81715 -21.26800 -19.58794 -19.30976 -17.85396 -17.40980 -17.21312 -16.80500 -16.73910 -16.62209 -15.92770 -15.90555 -15.51788 -15.40028 -14.98433 -14.73830 -14.48405 -14.42089 -14.04834 -13.54728 -13.38471 -13.28956 -13.12650 -12.95453 -12.87341 -12.72036 -12.71382 -12.52309 -12.18542 -12.16797 -11.89254 -11.83843 -11.77607 -11.66512 -11.60202 -11.03398 -10.98888 -10.81220 -10.06692 -9.80681 -9.26605 -8.78486 -8.06078 -5.00939 -0.28337 0.28102 1.20570 1.59010 1.64621 1.79380 1.80641 2.07519 2.46262 2.75424 2.78366 3.55122 3.62871 3.77069 3.85981 3.90142 4.04543 4.09788 4.15706 4.21281 4.31347 4.39674 4.40188 4.50017 4.51627 4.62206 4.74074 4.78065 4.80825 4.84615 4.99023 5.01110 5.05670 5.08399 5.14945 5.18731 5.32160 5.35105 5.41027 5.55819 5.65335 5.80642 6.29883 6.53897 6.77694 7.22474 7.33183 8.17466 8.31830 9.38323 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009668 B = 0.005321 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.564912 B = 5261.174616 C = 6475.156873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.326 6.326 3 C 0.125 3.875 4 C -0.178 4.178 5 C 0.010 3.990 6 Cl -0.051 7.051 7 C -0.066 4.066 8 C -0.101 4.101 9 C 0.566 3.434 10 O -0.583 6.583 11 N -0.686 5.686 12 C 0.145 3.855 13 H 0.058 0.942 14 C -0.152 4.152 15 C -0.121 4.121 16 C 0.167 3.833 17 H 0.025 0.975 18 C -0.152 4.152 19 N -0.730 5.730 20 C -0.328 4.328 21 H 0.039 0.961 22 C -0.073 4.073 23 N -0.925 5.925 24 Si 1.098 2.902 25 H -0.290 1.290 26 H -0.304 1.304 27 H -0.292 1.292 28 C -0.112 4.112 29 H 0.126 0.874 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.164 0.836 33 H 0.129 0.871 34 H 0.400 0.600 35 H 0.089 0.911 36 H 0.040 0.960 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.025 0.975 43 H 0.359 0.641 44 H 0.249 0.751 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.742 -1.973 -9.887 10.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.079 3.921 4 C -0.197 4.197 5 C -0.017 4.017 6 Cl -0.022 7.022 7 C -0.086 4.086 8 C -0.105 4.105 9 C 0.353 3.647 10 O -0.466 6.466 11 N -0.336 5.336 12 C 0.041 3.959 13 H 0.076 0.924 14 C -0.210 4.210 15 C -0.159 4.159 16 C 0.059 3.941 17 H 0.043 0.957 18 C -0.212 4.212 19 N -0.374 5.374 20 C -0.460 4.460 21 H 0.057 0.943 22 C -0.270 4.270 23 N -0.571 5.571 24 Si 0.930 3.070 25 H -0.216 1.216 26 H -0.232 1.232 27 H -0.219 1.219 28 C -0.132 4.132 29 H 0.145 0.855 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.181 0.819 33 H 0.147 0.853 34 H 0.238 0.762 35 H 0.107 0.893 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.130 0.870 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.045 0.955 43 H 0.193 0.807 44 H 0.061 0.939 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.581 -3.055 -8.953 9.806 hybrid contribution 0.754 0.928 -0.168 1.208 sum -1.827 -2.127 -9.121 9.542 Atomic orbital electron populations 1.23446 0.76031 1.06058 1.02470 1.86079 1.23806 1.25295 1.88783 1.18486 0.91217 0.84776 0.97583 1.21385 1.01743 0.89892 1.06708 1.20389 0.91520 0.88065 1.01692 1.98352 1.71094 1.36204 1.96579 1.20907 0.92282 0.97667 0.97770 1.19575 0.93022 0.93450 1.04409 1.18135 0.87247 0.83830 0.75444 1.90660 1.66708 1.36086 1.53122 1.45927 1.08016 1.07334 1.72359 1.21020 0.78932 0.98571 0.97400 0.92370 1.22113 1.02475 1.01756 0.94656 1.22157 1.03314 0.95637 0.94792 1.20402 0.83853 0.95349 0.94491 0.95688 1.22249 1.00249 0.98881 0.99810 1.42441 1.01263 1.76670 1.17073 1.19930 0.92484 1.38160 0.95421 0.94303 1.26066 0.93047 1.02114 1.05755 1.71114 1.35907 1.44518 1.05563 0.82933 0.75501 0.74940 0.73655 1.21555 1.23207 1.21944 1.20430 0.92192 0.97701 1.02883 0.85540 0.92100 0.91010 0.81873 0.85287 0.76229 0.89269 0.94066 0.91152 0.90442 0.87040 0.91208 0.93346 0.95524 0.80687 0.93874 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.81 113.37 1.11 1.37 16 2 O -0.33 -9.35 10.49 -92.60 -0.97 -10.32 16 3 C 0.13 4.17 6.68 22.46 0.15 4.32 16 4 C -0.18 -5.60 8.81 22.44 0.20 -5.40 16 5 C 0.01 0.37 6.31 22.27 0.14 0.51 16 6 Cl -0.05 -1.73 28.95 -2.72 -0.08 -1.80 16 7 C -0.07 -2.53 7.61 22.56 0.17 -2.36 16 8 C -0.10 -4.05 5.87 -20.10 -0.12 -4.17 16 9 C 0.57 23.57 7.74 86.79 0.67 24.24 16 10 O -0.58 -27.08 16.01 -3.85 -0.06 -27.14 16 11 N -0.69 -24.69 3.75 -445.41 -1.67 -26.36 16 12 C 0.14 4.50 2.57 44.99 0.12 4.62 16 13 H 0.06 2.14 7.58 -2.39 -0.02 2.13 16 14 C -0.15 -3.72 9.48 71.98 0.68 -3.04 16 15 C -0.12 -3.28 4.43 30.60 0.14 -3.14 16 16 C 0.17 6.07 2.89 44.99 0.13 6.20 16 17 H 0.02 1.03 8.08 -2.38 -0.02 1.01 16 18 C -0.15 -4.97 9.49 71.98 0.68 -4.28 16 19 N -0.73 -32.29 3.84 -322.94 -1.24 -33.53 16 20 C -0.33 -17.25 9.93 84.03 0.83 -16.42 16 21 H 0.04 2.17 7.83 -2.91 -0.02 2.14 16 22 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 23 N -0.92 -47.81 12.26 21.65 0.27 -47.54 16 24 Si 1.10 52.12 29.92 68.60 2.05 54.17 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 26 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 27 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 28 C -0.11 -4.28 9.53 22.64 0.22 -4.07 16 29 H 0.13 1.58 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.08 7.66 -2.39 -0.02 1.06 16 31 H 0.07 1.08 7.66 -2.38 -0.02 1.06 16 32 H 0.16 4.05 6.28 -2.91 -0.02 4.04 16 33 H 0.13 5.02 4.73 -2.91 -0.01 5.01 16 34 H 0.40 14.14 4.54 -92.71 -0.42 13.72 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.36 15.67 4.54 -92.71 -0.42 15.25 16 44 H 0.25 12.40 4.78 -92.71 -0.44 11.95 16 45 H 0.13 5.18 7.65 -2.91 -0.02 5.16 16 Total: -1.00 -64.72 377.80 4.39 -60.33 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: 0.51 Total: 37.22 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 5.59 Total: -5.02 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -2.65 Total: -107.43 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -1.03 Total: -37.46 kcal Atomic # 14 Polarization: 52.12 SS G_CDS: 2.05 Total: 54.17 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.80 kcal Total: -64.72 4.39 -60.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135765723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.850 kcal (2) G-P(sol) polarization free energy of solvation -64.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds