Wall clock time and date at job start Wed Apr 1 2020 00:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35904 * 116.99759 * 2 1 4 4 C 1.38832 * 119.98101 * 359.97438 * 3 2 1 5 5 C 1.38355 * 120.22680 * 179.97438 * 4 3 2 6 6 Cl 1.73604 * 119.90635 * 179.97438 * 5 4 3 7 7 C 1.38125 * 120.17918 * 0.02562 * 5 4 3 8 8 C 1.39542 * 119.95549 * 0.02562 * 7 5 4 9 9 C 1.47867 * 120.11631 * 180.02562 * 8 7 5 10 10 O 1.21554 * 120.00152 * 179.97438 * 9 8 7 11 11 N 1.34774 * 119.99669 * 359.97438 * 9 8 7 12 12 C 1.46506 * 119.99878 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46457 * 324.99859 * 12 11 9 14 14 C 1.52998 * 109.46950 * 85.00403 * 12 11 9 15 15 C 1.53004 * 109.46893 * 205.00471 * 12 11 9 16 16 C 1.52999 * 109.47215 * 65.00072 * 15 12 11 17 17 H 1.09001 * 109.46984 * 304.99365 * 16 15 12 18 18 C 1.53001 * 109.46723 * 184.99915 * 16 15 12 19 19 N 1.46498 * 109.47447 * 64.99868 * 16 15 12 20 20 C 1.36934 * 120.00067 * 205.00036 * 19 16 15 21 21 H 1.07997 * 120.00014 * 359.97438 * 20 19 16 22 22 C 1.38807 * 119.99768 * 180.02562 * 20 19 16 23 23 N 1.31622 * 119.99919 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00317 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46837 * 90.00453 * 24 22 20 26 26 H 1.48500 * 109.47301 * 210.00019 * 24 22 20 27 27 H 1.48498 * 109.47101 * 330.00486 * 24 22 20 28 28 C 1.38460 * 119.97719 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46941 * 300.00378 * 1 2 3 30 30 H 1.09001 * 109.46806 * 60.00540 * 1 2 3 31 31 H 1.09003 * 109.46715 * 180.02562 * 1 2 3 32 32 H 1.08004 * 119.88361 * 0.25536 * 4 3 2 33 33 H 1.08008 * 120.02637 * 179.97438 * 7 5 4 34 34 H 0.96998 * 120.00131 * 0.02562 * 11 9 8 35 35 H 1.08998 * 109.46766 * 299.99506 * 14 12 11 36 36 H 1.08998 * 109.47293 * 59.99804 * 14 12 11 37 37 H 1.09004 * 109.46839 * 180.02562 * 14 12 11 38 38 H 1.09003 * 109.46612 * 184.99990 * 15 12 11 39 39 H 1.08994 * 109.46813 * 304.99860 * 15 12 11 40 40 H 1.08993 * 109.47208 * 299.99644 * 18 16 15 41 41 H 1.09001 * 109.47440 * 59.99888 * 18 16 15 42 42 H 1.09004 * 109.46974 * 179.97438 * 18 16 15 43 43 H 0.97002 * 119.99827 * 24.99967 * 19 16 15 44 44 H 0.96997 * 120.00142 * 179.97438 * 23 22 20 45 45 H 1.08000 * 120.08929 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2895 2.3750 -0.0005 5 6 1.9122 3.6105 0.0000 6 17 0.9580 5.0608 -0.0014 7 6 3.2910 3.6930 0.0005 8 6 4.0588 2.5278 0.0000 9 6 5.5351 2.6121 0.0011 10 8 6.2019 1.5958 0.0011 11 7 6.1413 3.8158 0.0022 12 6 7.6040 3.8993 0.0027 13 1 8.0144 3.0792 0.5918 14 6 8.1207 3.8040 -1.4342 15 6 8.0383 5.2332 0.6136 16 6 7.6299 5.2763 2.0874 17 1 6.5599 5.0869 2.1736 18 6 7.9517 6.6559 2.6655 19 7 8.3687 4.2516 2.8291 20 6 7.8522 3.7405 3.9898 21 1 6.9004 4.0932 4.3586 22 6 8.5525 2.7699 4.6928 23 7 8.0558 2.2783 5.8082 24 14 10.1991 2.1604 4.0553 25 1 11.2885 2.9990 4.6168 26 1 10.3982 0.7482 4.4692 27 1 10.2198 2.2494 2.5731 28 6 3.4288 1.2829 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 0.2111 2.3159 0.0032 33 1 3.7746 4.6588 0.0005 34 1 5.6092 4.6268 0.0026 35 1 7.8113 2.8537 -1.8692 36 1 7.7102 4.6241 -2.0231 37 1 9.2090 3.8657 -1.4337 38 1 9.1207 5.3342 0.5334 39 1 7.5565 6.0517 0.0789 40 1 9.0215 6.8454 2.5794 41 1 7.4020 7.4184 2.1137 42 1 7.6603 6.6868 3.7155 43 1 9.2237 3.9350 2.4981 44 1 8.5450 1.5998 6.2993 45 1 4.0181 0.3779 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135765724.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:19 Heat of formation + Delta-G solvation = -46.175242 kcal Electronic energy + Delta-G solvation = -27518.142098 eV Core-core repulsion = 23562.220506 eV Total energy + Delta-G solvation = -3955.921592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.68702 -39.55953 -37.79383 -37.01857 -36.36316 -34.62601 -32.29356 -31.58123 -31.00374 -29.92812 -29.17672 -27.64366 -26.42556 -24.24975 -23.25432 -22.79835 -21.30755 -20.44072 -19.83500 -18.85541 -17.57756 -16.99479 -16.49542 -16.30914 -16.09250 -15.80655 -15.01171 -14.93439 -14.58086 -14.20352 -14.04341 -13.89349 -13.60123 -13.49590 -13.03937 -12.70120 -12.59327 -12.40843 -12.30193 -12.18153 -12.09663 -11.96771 -11.71419 -11.49918 -11.32634 -11.24823 -11.02696 -10.90240 -10.65349 -10.48313 -10.25975 -9.94126 -9.79867 -9.51962 -9.19964 -8.87090 -8.81795 -8.57338 -7.20370 -5.69798 -3.04820 0.53132 0.94967 1.75788 2.77797 2.82152 3.34468 3.44006 3.46614 3.52118 3.67108 4.39938 4.55606 4.66492 4.69264 4.78867 4.83065 4.92779 4.97281 5.08341 5.14730 5.24705 5.26309 5.32920 5.52826 5.60514 5.74450 5.76664 5.80418 5.84253 5.87372 5.98882 6.00962 6.14396 6.19080 6.25650 6.33305 6.43629 6.52836 6.70216 6.82525 6.98692 6.99971 7.65373 8.05283 8.37944 8.48949 9.27453 10.00301 10.19198 11.48821 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.003396 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.496485 B = 8243.786894 C = 8940.203254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.135 3.865 4 C -0.183 4.183 5 C -0.002 4.002 6 Cl -0.062 7.062 7 C -0.115 4.115 8 C -0.072 4.072 9 C 0.562 3.438 10 O -0.522 6.522 11 N -0.708 5.708 12 C 0.142 3.858 13 H 0.103 0.897 14 C -0.162 4.162 15 C -0.135 4.135 16 C 0.176 3.824 17 H 0.054 0.946 18 C -0.166 4.166 19 N -0.745 5.745 20 C -0.238 4.238 21 H 0.088 0.912 22 C 0.006 3.994 23 N -0.935 5.935 24 Si 0.882 3.118 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.276 1.276 28 C -0.087 4.087 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.395 0.605 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.037 0.963 42 H 0.057 0.943 43 H 0.360 0.640 44 H 0.258 0.742 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.946 4.289 -17.700 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.089 3.911 4 C -0.203 4.203 5 C -0.029 4.029 6 Cl -0.033 7.033 7 C -0.134 4.134 8 C -0.075 4.075 9 C 0.347 3.653 10 O -0.398 6.398 11 N -0.360 5.360 12 C 0.039 3.961 13 H 0.121 0.879 14 C -0.220 4.220 15 C -0.174 4.174 16 C 0.066 3.934 17 H 0.072 0.928 18 C -0.226 4.226 19 N -0.388 5.388 20 C -0.368 4.368 21 H 0.105 0.895 22 C -0.190 4.190 23 N -0.583 5.583 24 Si 0.713 3.287 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.202 1.202 28 C -0.106 4.106 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.231 0.769 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.192 0.808 44 H 0.068 0.932 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.592 3.431 -17.496 23.039 hybrid contribution 0.515 0.241 -0.164 0.592 sum -14.077 3.672 -17.660 22.880 Atomic orbital electron populations 1.23146 0.77987 1.04418 1.01549 1.86152 1.21663 1.25800 1.88469 1.18649 0.91787 0.84116 0.96516 1.21205 1.00885 0.90581 1.07621 1.20412 0.91484 0.87526 1.03442 1.98385 1.71867 1.36221 1.96838 1.21082 0.91609 0.98818 1.01926 1.19716 0.93667 0.92613 1.01520 1.17901 0.86448 0.84070 0.76839 1.90810 1.65545 1.34765 1.48704 1.45854 1.07932 1.07550 1.74639 1.21070 0.78760 1.00241 0.96076 0.87946 1.22195 1.01255 1.01918 0.96673 1.22233 1.02016 0.95602 0.97541 1.20202 0.96221 0.88638 0.88290 0.92786 1.22422 1.00522 0.97909 1.01716 1.42771 1.22791 1.46060 1.27219 1.19002 1.04174 1.16440 0.97192 0.89451 1.24633 0.98290 0.99042 0.97004 1.69697 1.39228 1.32224 1.17140 0.86576 0.85371 0.78303 0.78458 1.21321 1.21835 1.20219 1.20616 0.91268 0.98792 0.99941 0.92281 0.92449 0.87825 0.84038 0.84290 0.76946 0.92308 0.92813 0.91714 0.90564 0.91466 0.93612 0.94356 0.92394 0.80752 0.93182 0.82992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.39 10.49 -19.44 -0.20 -3.59 16 3 C 0.14 1.61 6.68 -39.28 -0.26 1.34 16 4 C -0.18 -1.88 8.81 -39.32 -0.35 -2.22 16 5 C 0.00 -0.02 6.31 -39.58 -0.25 -0.27 16 6 Cl -0.06 -0.59 28.95 -51.86 -1.50 -2.09 16 7 C -0.11 -1.32 9.32 -39.14 -0.36 -1.68 16 8 C -0.07 -1.00 5.87 -104.99 -0.62 -1.61 16 9 C 0.56 9.25 7.74 -12.32 -0.10 9.15 16 10 O -0.52 -10.67 16.01 5.32 0.09 -10.59 16 11 N -0.71 -9.98 4.40 -54.74 -0.24 -10.22 16 12 C 0.14 2.15 2.52 -67.93 -0.17 1.98 16 13 H 0.10 2.02 7.05 -51.93 -0.37 1.65 16 14 C -0.16 -2.03 9.48 37.16 0.35 -1.68 16 15 C -0.14 -1.88 4.29 -26.73 -0.11 -1.99 16 16 C 0.18 3.16 2.84 -67.93 -0.19 2.96 16 17 H 0.05 1.01 7.56 -51.93 -0.39 0.62 16 18 C -0.17 -2.74 9.49 37.16 0.35 -2.39 16 19 N -0.75 -17.21 4.30 -53.43 -0.23 -17.44 16 20 C -0.24 -6.72 10.41 -15.06 -0.16 -6.88 16 21 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 22 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 23 N -0.93 -29.98 13.97 55.49 0.78 -29.20 16 24 Si 0.88 22.78 27.74 -169.99 -4.71 18.07 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 27 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 28 C -0.09 -1.20 9.53 -39.02 -0.37 -1.57 16 29 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 30 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.14 1.10 6.28 -52.48 -0.33 0.77 16 33 H 0.14 1.31 6.40 -52.48 -0.34 0.97 16 34 H 0.40 4.39 6.63 -40.82 -0.27 4.12 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.36 8.28 5.66 -40.82 -0.23 8.05 16 44 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 45 H 0.15 2.23 7.65 -52.49 -0.40 1.83 16 LS Contribution 387.37 15.07 5.84 5.84 Total: -1.00 -34.81 387.37 -8.05 -42.86 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -6.52 Total: 10.01 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.34 Total: -3.64 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.30 Total: -56.87 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.12 Total: -14.18 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.71 Total: 18.07 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.81 -8.05 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135765724.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.312 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds