Wall clock time and date at job start Wed Apr 1 2020 00:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35904 * 116.99759 * 2 1 4 4 C 1.38832 * 119.98101 * 359.97438 * 3 2 1 5 5 C 1.38355 * 120.22680 * 179.97438 * 4 3 2 6 6 Cl 1.73604 * 119.90635 * 179.97438 * 5 4 3 7 7 C 1.38125 * 120.17918 * 0.02562 * 5 4 3 8 8 C 1.39542 * 119.95549 * 0.02562 * 7 5 4 9 9 C 1.47867 * 120.11631 * 180.02562 * 8 7 5 10 10 O 1.21554 * 120.00152 * 179.97438 * 9 8 7 11 11 N 1.34774 * 119.99669 * 359.97438 * 9 8 7 12 12 C 1.46506 * 119.99878 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46457 * 324.99859 * 12 11 9 14 14 C 1.52998 * 109.46950 * 85.00403 * 12 11 9 15 15 C 1.53004 * 109.46893 * 205.00471 * 12 11 9 16 16 C 1.52999 * 109.47215 * 65.00072 * 15 12 11 17 17 H 1.09001 * 109.46984 * 304.99365 * 16 15 12 18 18 C 1.53001 * 109.46723 * 184.99915 * 16 15 12 19 19 N 1.46498 * 109.47447 * 64.99868 * 16 15 12 20 20 C 1.36934 * 120.00067 * 205.00036 * 19 16 15 21 21 H 1.07997 * 120.00014 * 359.97438 * 20 19 16 22 22 C 1.38807 * 119.99768 * 180.02562 * 20 19 16 23 23 N 1.31622 * 119.99919 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00317 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46837 * 90.00453 * 24 22 20 26 26 H 1.48500 * 109.47301 * 210.00019 * 24 22 20 27 27 H 1.48498 * 109.47101 * 330.00486 * 24 22 20 28 28 C 1.38460 * 119.97719 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46941 * 300.00378 * 1 2 3 30 30 H 1.09001 * 109.46806 * 60.00540 * 1 2 3 31 31 H 1.09003 * 109.46715 * 180.02562 * 1 2 3 32 32 H 1.08004 * 119.88361 * 0.25536 * 4 3 2 33 33 H 1.08008 * 120.02637 * 179.97438 * 7 5 4 34 34 H 0.96998 * 120.00131 * 0.02562 * 11 9 8 35 35 H 1.08998 * 109.46766 * 299.99506 * 14 12 11 36 36 H 1.08998 * 109.47293 * 59.99804 * 14 12 11 37 37 H 1.09004 * 109.46839 * 180.02562 * 14 12 11 38 38 H 1.09003 * 109.46612 * 184.99990 * 15 12 11 39 39 H 1.08994 * 109.46813 * 304.99860 * 15 12 11 40 40 H 1.08993 * 109.47208 * 299.99644 * 18 16 15 41 41 H 1.09001 * 109.47440 * 59.99888 * 18 16 15 42 42 H 1.09004 * 109.46974 * 179.97438 * 18 16 15 43 43 H 0.97002 * 119.99827 * 24.99967 * 19 16 15 44 44 H 0.96997 * 120.00142 * 179.97438 * 23 22 20 45 45 H 1.08000 * 120.08929 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2895 2.3750 -0.0005 5 6 1.9122 3.6105 0.0000 6 17 0.9580 5.0608 -0.0014 7 6 3.2910 3.6930 0.0005 8 6 4.0588 2.5278 0.0000 9 6 5.5351 2.6121 0.0011 10 8 6.2019 1.5958 0.0011 11 7 6.1413 3.8158 0.0022 12 6 7.6040 3.8993 0.0027 13 1 8.0144 3.0792 0.5918 14 6 8.1207 3.8040 -1.4342 15 6 8.0383 5.2332 0.6136 16 6 7.6299 5.2763 2.0874 17 1 6.5599 5.0869 2.1736 18 6 7.9517 6.6559 2.6655 19 7 8.3687 4.2516 2.8291 20 6 7.8522 3.7405 3.9898 21 1 6.9004 4.0932 4.3586 22 6 8.5525 2.7699 4.6928 23 7 8.0558 2.2783 5.8082 24 14 10.1991 2.1604 4.0553 25 1 11.2885 2.9990 4.6168 26 1 10.3982 0.7482 4.4692 27 1 10.2198 2.2494 2.5731 28 6 3.4288 1.2829 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 0.2111 2.3159 0.0032 33 1 3.7746 4.6588 0.0005 34 1 5.6092 4.6268 0.0026 35 1 7.8113 2.8537 -1.8692 36 1 7.7102 4.6241 -2.0231 37 1 9.2090 3.8657 -1.4337 38 1 9.1207 5.3342 0.5334 39 1 7.5565 6.0517 0.0789 40 1 9.0215 6.8454 2.5794 41 1 7.4020 7.4184 2.1137 42 1 7.6603 6.6868 3.7155 43 1 9.2237 3.9350 2.4981 44 1 8.5450 1.5998 6.2993 45 1 4.0181 0.3779 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135765724.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:18 Heat of formation + Delta-G solvation = -69.971703 kcal Electronic energy + Delta-G solvation = -27519.173990 eV Core-core repulsion = 23562.220506 eV Total energy + Delta-G solvation = -3956.953484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.68094 -40.64873 -38.75531 -38.31647 -37.28781 -36.18636 -34.12948 -32.87121 -31.97931 -31.22082 -30.67812 -28.27891 -27.60246 -25.46492 -25.12468 -23.70993 -22.45957 -21.69822 -21.29434 -19.95838 -19.52930 -17.99042 -17.48191 -17.28225 -16.94823 -16.83252 -16.62281 -16.12446 -15.95378 -15.66902 -15.25512 -15.09698 -14.81998 -14.61885 -14.41483 -14.20828 -14.01996 -13.47074 -13.38465 -13.27980 -13.11611 -12.99041 -12.87201 -12.79830 -12.62774 -12.38874 -12.29858 -12.10429 -11.98923 -11.87037 -11.84622 -11.67475 -11.44192 -11.11117 -10.94912 -10.21934 -9.96684 -9.46099 -9.25601 -8.00218 -5.30205 -0.45886 0.03144 0.90307 1.34237 1.39443 1.44854 1.67585 1.94302 2.35802 2.49244 2.59250 3.33055 3.45272 3.66620 3.72799 3.81597 3.84438 3.97790 4.05790 4.12174 4.27458 4.35277 4.37264 4.38225 4.52699 4.66770 4.72150 4.78159 4.83505 4.85468 4.88321 4.93306 4.99966 5.03854 5.09875 5.19734 5.25803 5.34420 5.38270 5.56951 5.62544 5.81448 6.20561 6.24727 6.50875 7.12767 7.19123 7.91611 8.07103 9.22116 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.003396 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.496485 B = 8243.786894 C = 8940.203254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.328 6.328 3 C 0.135 3.865 4 C -0.170 4.170 5 C -0.004 4.004 6 Cl -0.043 7.043 7 C -0.110 4.110 8 C -0.088 4.088 9 C 0.555 3.445 10 O -0.576 6.576 11 N -0.695 5.695 12 C 0.139 3.861 13 H 0.051 0.949 14 C -0.152 4.152 15 C -0.122 4.122 16 C 0.165 3.835 17 H 0.042 0.958 18 C -0.157 4.157 19 N -0.749 5.749 20 C -0.213 4.213 21 H 0.054 0.946 22 C -0.068 4.068 23 N -0.988 5.988 24 Si 0.948 3.052 25 H -0.275 1.275 26 H -0.304 1.304 27 H -0.255 1.255 28 C -0.112 4.112 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.172 0.828 33 H 0.161 0.839 34 H 0.412 0.588 35 H 0.037 0.963 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.052 0.948 41 H 0.079 0.921 42 H 0.024 0.976 43 H 0.362 0.638 44 H 0.254 0.746 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.784 7.032 -20.245 26.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.242 6.242 3 C 0.088 3.912 4 C -0.189 4.189 5 C -0.030 4.030 6 Cl -0.014 7.014 7 C -0.129 4.129 8 C -0.092 4.092 9 C 0.342 3.658 10 O -0.456 6.456 11 N -0.347 5.347 12 C 0.035 3.965 13 H 0.070 0.930 14 C -0.210 4.210 15 C -0.160 4.160 16 C 0.058 3.942 17 H 0.060 0.940 18 C -0.217 4.217 19 N -0.392 5.392 20 C -0.344 4.344 21 H 0.072 0.928 22 C -0.258 4.258 23 N -0.640 5.640 24 Si 0.776 3.224 25 H -0.201 1.201 26 H -0.232 1.232 27 H -0.180 1.180 28 C -0.132 4.132 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.140 0.860 32 H 0.189 0.811 33 H 0.178 0.822 34 H 0.250 0.750 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.132 0.868 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.044 0.956 43 H 0.195 0.805 44 H 0.062 0.938 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.451 6.271 -20.101 26.117 hybrid contribution 0.556 -0.537 0.606 0.982 sum -14.895 5.734 -19.495 25.195 Atomic orbital electron populations 1.23507 0.75565 1.06216 1.02882 1.86138 1.24206 1.25566 1.88293 1.18614 0.91123 0.85183 0.96236 1.21487 1.02219 0.89657 1.05568 1.20507 0.91421 0.88410 1.02704 1.98395 1.71227 1.35105 1.96701 1.21224 0.92039 0.98634 1.01035 1.19534 0.92364 0.93649 1.03639 1.18370 0.87541 0.83962 0.75946 1.90772 1.66878 1.36560 1.51417 1.45774 1.07959 1.07593 1.73397 1.21023 0.78995 0.99239 0.97229 0.93049 1.22102 1.02049 1.02073 0.94822 1.22166 1.03268 0.96185 0.94350 1.20531 0.95117 0.87955 0.90625 0.93956 1.22283 1.01542 0.97726 1.00125 1.42829 1.23228 1.47133 1.26057 1.18966 1.02378 1.14969 0.98115 0.92844 1.25412 1.02500 1.00243 0.97678 1.69879 1.41200 1.33684 1.19189 0.85504 0.80992 0.76895 0.79000 1.20076 1.23161 1.18005 1.20585 0.92523 0.98222 1.01852 0.91287 0.90610 0.86033 0.81113 0.82185 0.74988 0.94343 0.89720 0.90528 0.89263 0.86845 0.92935 0.90177 0.95632 0.80507 0.93751 0.85332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.25 16 2 O -0.33 -7.16 10.49 -92.46 -0.97 -8.13 16 3 C 0.13 3.19 6.68 22.47 0.15 3.34 16 4 C -0.17 -3.16 8.81 22.44 0.20 -2.96 16 5 C 0.00 -0.07 6.31 22.27 0.14 0.07 16 6 Cl -0.04 -0.70 28.95 -2.72 -0.08 -0.78 16 7 C -0.11 -2.38 9.32 22.56 0.21 -2.17 16 8 C -0.09 -2.53 5.87 -20.10 -0.12 -2.65 16 9 C 0.55 18.96 7.74 86.79 0.67 19.63 16 10 O -0.58 -25.24 16.01 -3.89 -0.06 -25.31 16 11 N -0.70 -19.05 4.40 -445.37 -1.96 -21.01 16 12 C 0.14 4.02 2.52 44.99 0.11 4.13 16 13 H 0.05 2.05 7.05 -2.39 -0.02 2.03 16 14 C -0.15 -3.48 9.48 71.98 0.68 -2.80 16 15 C -0.12 -2.94 4.29 30.60 0.13 -2.81 16 16 C 0.17 5.62 2.84 44.99 0.13 5.75 16 17 H 0.04 1.54 7.56 -2.39 -0.02 1.53 16 18 C -0.16 -4.76 9.49 71.98 0.68 -4.08 16 19 N -0.75 -34.38 4.30 -322.95 -1.39 -35.76 16 20 C -0.21 -12.35 10.41 84.03 0.87 -11.48 16 21 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 22 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 23 N -0.99 -66.07 13.97 21.65 0.30 -65.77 16 24 Si 0.95 48.18 27.74 68.60 1.90 50.08 16 25 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 26 H -0.30 -16.00 7.11 99.48 0.71 -15.29 16 27 H -0.26 -11.92 6.52 99.48 0.65 -11.27 16 28 C -0.11 -3.30 9.53 22.63 0.22 -3.09 16 29 H 0.07 0.64 7.65 -2.39 -0.02 0.62 16 30 H 0.08 0.57 7.66 -2.39 -0.02 0.56 16 31 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.17 2.09 6.28 -2.91 -0.02 2.07 16 33 H 0.16 2.61 6.40 -2.91 -0.02 2.59 16 34 H 0.41 8.19 6.63 -92.71 -0.61 7.57 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.36 16.28 5.66 -92.71 -0.52 15.76 16 44 H 0.25 16.31 8.31 -92.71 -0.77 15.54 16 45 H 0.13 4.27 7.65 -2.91 -0.02 4.25 16 Total: -1.00 -81.96 387.37 3.23 -78.73 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: -0.18 Total: 29.48 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 5.66 Total: -1.53 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -3.04 Total: -122.54 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -1.03 Total: -33.44 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 1.90 Total: 50.08 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -81.96 3.23 -78.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135765724.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.755 kcal (2) G-P(sol) polarization free energy of solvation -81.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds