Wall clock time and date at job start Wed Apr 1 2020 00:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 117.00356 * 2 1 4 4 C 1.38832 * 119.97680 * 359.97438 * 3 2 1 5 5 C 1.38355 * 120.22680 * 179.97438 * 4 3 2 6 6 Cl 1.73604 * 119.90635 * 179.97438 * 5 4 3 7 7 C 1.38125 * 120.17918 * 0.02562 * 5 4 3 8 8 C 1.39542 * 119.95549 * 0.02562 * 7 5 4 9 9 C 1.47866 * 120.11631 * 179.97438 * 8 7 5 10 10 O 1.21545 * 119.99911 * 179.97438 * 9 8 7 11 11 N 1.34774 * 119.99637 * 0.02562 * 9 8 7 12 12 C 1.46496 * 120.00037 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47377 * 34.99440 * 12 11 9 14 14 C 1.53005 * 109.47007 * 274.99652 * 12 11 9 15 15 C 1.53005 * 109.47482 * 154.99767 * 12 11 9 16 16 C 1.53002 * 109.46762 * 294.99739 * 15 12 11 17 17 H 1.08998 * 109.47249 * 305.00035 * 16 15 12 18 18 C 1.53001 * 109.46798 * 184.99732 * 16 15 12 19 19 N 1.46503 * 109.47011 * 65.00447 * 16 15 12 20 20 C 1.36940 * 119.99777 * 204.99913 * 19 16 15 21 21 H 1.07994 * 119.99870 * 359.97438 * 20 19 16 22 22 C 1.38813 * 119.99994 * 179.97438 * 20 19 16 23 23 N 1.31623 * 119.99657 * 359.97438 * 22 20 19 24 24 Si 1.86790 * 120.00098 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47145 * 60.00107 * 24 22 20 26 26 H 1.48497 * 109.47521 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47340 * 300.00254 * 24 22 20 28 28 C 1.38460 * 119.98141 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46721 * 60.00479 * 1 2 3 30 30 H 1.09002 * 109.47412 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46850 * 300.00425 * 1 2 3 32 32 H 1.08004 * 119.88361 * 0.25532 * 4 3 2 33 33 H 1.08008 * 120.02106 * 179.97438 * 7 5 4 34 34 H 0.96998 * 120.00157 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.46574 * 60.00109 * 14 12 11 36 36 H 1.09003 * 109.46863 * 179.97438 * 14 12 11 37 37 H 1.08997 * 109.47184 * 299.99836 * 14 12 11 38 38 H 1.08998 * 109.46848 * 55.00091 * 15 12 11 39 39 H 1.08995 * 109.47129 * 175.00195 * 15 12 11 40 40 H 1.08998 * 109.47356 * 60.00151 * 18 16 15 41 41 H 1.09003 * 109.47220 * 180.02562 * 18 16 15 42 42 H 1.09003 * 109.47149 * 300.00526 * 18 16 15 43 43 H 0.97000 * 119.99913 * 24.98673 * 19 16 15 44 44 H 0.97001 * 119.99800 * 179.97438 * 23 22 20 45 45 H 1.07999 * 120.08914 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2895 2.3750 -0.0005 5 6 1.9123 3.6104 0.0000 6 17 0.9582 5.0607 -0.0014 7 6 3.2911 3.6929 0.0005 8 6 4.0589 2.5277 0.0000 9 6 5.5352 2.6119 0.0000 10 8 6.2018 1.5956 0.0000 11 7 6.1414 3.8156 0.0010 12 6 7.6040 3.8992 0.0005 13 1 8.0145 3.0800 -0.5900 14 6 8.1209 3.8012 1.4372 15 6 8.0384 5.2341 -0.6080 16 6 7.6299 5.2798 -2.0817 17 1 8.0394 4.4124 -2.5994 18 6 8.1726 6.5591 -2.7219 19 7 6.1685 5.2646 -2.1840 20 6 5.5666 4.7947 -3.3208 21 1 6.1692 4.4357 -4.1419 22 6 4.1819 4.7798 -3.4175 23 7 3.4475 5.2169 -2.4165 24 14 3.3609 4.1394 -4.9683 25 1 3.7510 2.7232 -5.1863 26 1 1.8860 4.2288 -4.8207 27 1 3.7930 4.9563 -6.1307 28 6 3.4288 1.2828 0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.2111 2.3159 0.0032 33 1 3.7747 4.6587 0.0005 34 1 5.6093 4.6266 0.0014 35 1 7.8114 2.8502 1.8706 36 1 9.2092 3.8629 1.4367 37 1 7.7105 4.6203 2.0276 38 1 7.5566 6.0517 -0.0717 39 1 9.1207 5.3349 -0.5277 40 1 9.2598 6.5706 -2.6457 41 1 7.8811 6.5920 -3.7717 42 1 7.7630 7.4265 -2.2041 43 1 5.6273 5.5873 -1.4465 44 1 2.4800 5.2068 -2.4842 45 1 4.0181 0.3777 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135765725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:22 Heat of formation + Delta-G solvation = -41.160554 kcal Electronic energy + Delta-G solvation = -28879.947290 eV Core-core repulsion = 24924.243151 eV Total energy + Delta-G solvation = -3955.704139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.10254 -39.14020 -37.23264 -36.66120 -35.65856 -34.17297 -32.36154 -31.13790 -30.38382 -29.51461 -28.44385 -27.16777 -26.33655 -23.67717 -23.64354 -22.12538 -20.94014 -20.25317 -19.66206 -18.19306 -17.17653 -16.42583 -15.97230 -15.81025 -15.63991 -15.34165 -14.84529 -14.43319 -14.22627 -13.82816 -13.75167 -13.46851 -13.36460 -13.04037 -12.81824 -12.55492 -12.19760 -12.12871 -11.89664 -11.75911 -11.66423 -11.60009 -11.52340 -11.02194 -10.91308 -10.81630 -10.71278 -10.51653 -10.39244 -10.35057 -10.24261 -9.91329 -9.66121 -9.33571 -8.95303 -8.55522 -8.32363 -7.85861 -6.91075 -5.78219 -3.01794 1.17983 1.73625 2.58193 3.30225 3.36651 3.44440 3.49173 3.51984 3.85541 4.31021 4.60670 4.98056 5.04974 5.11032 5.16772 5.30679 5.41720 5.43993 5.49381 5.55343 5.57605 5.65558 5.68081 5.72099 5.88324 5.95441 5.97324 6.01675 6.13858 6.24383 6.36775 6.39398 6.41203 6.55375 6.59202 6.63124 6.74994 6.85570 6.87255 7.05173 7.15791 7.52726 7.72098 8.16488 8.41554 8.86054 9.52829 10.03639 10.39855 11.43770 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009653 B = 0.005326 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.039437 B = 5256.280765 C = 6482.213688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.109 3.891 4 C -0.185 4.185 5 C 0.003 3.997 6 Cl -0.064 7.064 7 C -0.043 4.043 8 C -0.088 4.088 9 C 0.575 3.425 10 O -0.557 6.557 11 N -0.691 5.691 12 C 0.150 3.850 13 H 0.084 0.916 14 C -0.163 4.163 15 C -0.134 4.134 16 C 0.169 3.831 17 H 0.048 0.952 18 C -0.163 4.163 19 N -0.715 5.715 20 C -0.228 4.228 21 H 0.065 0.935 22 C -0.004 4.004 23 N -0.920 5.920 24 Si 0.894 3.106 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.290 1.290 28 C -0.092 4.092 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.132 0.868 33 H 0.150 0.850 34 H 0.404 0.596 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.035 0.965 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.376 0.624 44 H 0.259 0.741 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.376 -2.179 9.171 9.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.064 3.936 4 C -0.205 4.205 5 C -0.024 4.024 6 Cl -0.035 7.035 7 C -0.063 4.063 8 C -0.092 4.092 9 C 0.362 3.638 10 O -0.437 6.437 11 N -0.343 5.343 12 C 0.045 3.955 13 H 0.103 0.897 14 C -0.221 4.221 15 C -0.173 4.173 16 C 0.059 3.941 17 H 0.066 0.934 18 C -0.223 4.223 19 N -0.358 5.358 20 C -0.359 4.359 21 H 0.083 0.917 22 C -0.201 4.201 23 N -0.569 5.569 24 Si 0.726 3.274 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.217 1.217 28 C -0.111 4.111 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.168 0.832 34 H 0.243 0.757 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.211 0.789 44 H 0.070 0.930 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.939 -2.981 8.989 9.517 hybrid contribution -1.459 0.524 -1.066 1.882 sum -2.398 -2.457 7.923 8.635 Atomic orbital electron populations 1.23022 0.78814 1.03611 1.01335 1.86069 1.20993 1.26454 1.89405 1.18482 0.91748 0.83693 0.99688 1.21113 1.00170 0.90978 1.08198 1.20300 0.91900 0.86832 1.03352 1.98351 1.71641 1.36771 1.96759 1.21161 0.91363 0.99034 0.94739 1.19544 0.93416 0.92643 1.03584 1.17845 0.86707 0.83606 0.75637 1.90690 1.66073 1.35234 1.51690 1.45878 1.06910 1.08289 1.73205 1.20834 0.80390 0.98704 0.95577 0.89750 1.22213 1.00721 1.02071 0.97104 1.22220 1.00941 0.96195 0.97903 1.20288 0.86397 0.95484 0.91923 0.93389 1.22415 0.98118 1.00027 1.01745 1.42433 0.99179 1.75869 1.18305 1.19105 0.89610 1.33248 0.93898 0.91703 1.24485 0.95978 1.02127 0.97467 1.69448 1.05016 1.52138 1.30252 0.86456 0.78604 0.78732 0.83594 1.21592 1.21808 1.21679 1.20400 0.90990 0.98345 1.01413 0.92695 0.88449 0.92789 0.85022 0.83206 0.75714 0.92316 0.92079 0.92768 0.91736 0.90739 0.94631 0.92888 0.93632 0.78902 0.93045 0.84178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.78 10.49 -19.44 -0.20 -4.99 16 3 C 0.11 1.85 6.68 -39.28 -0.26 1.58 16 4 C -0.18 -3.00 8.81 -39.32 -0.35 -3.35 16 5 C 0.00 0.05 6.31 -39.58 -0.25 -0.20 16 6 Cl -0.06 -1.07 28.80 -51.86 -1.49 -2.57 16 7 C -0.04 -0.80 7.62 -39.14 -0.30 -1.10 16 8 C -0.09 -1.71 5.87 -104.99 -0.62 -2.32 16 9 C 0.57 11.52 7.74 -12.32 -0.10 11.42 16 10 O -0.56 -12.35 16.01 5.33 0.09 -12.26 16 11 N -0.69 -12.21 3.75 -54.74 -0.21 -12.42 16 12 C 0.15 2.35 2.57 -67.93 -0.17 2.18 16 13 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 14 C -0.16 -2.13 9.48 37.16 0.35 -1.78 16 15 C -0.13 -1.94 4.43 -26.73 -0.12 -2.05 16 16 C 0.17 3.04 2.89 -67.93 -0.20 2.84 16 17 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 18 C -0.16 -2.72 9.49 37.16 0.35 -2.37 16 19 N -0.71 -15.43 3.84 -53.42 -0.21 -15.63 16 20 C -0.23 -5.74 9.93 -15.06 -0.15 -5.89 16 21 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 22 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 23 N -0.92 -22.97 10.71 55.49 0.59 -22.38 16 24 Si 0.89 21.91 29.55 -169.99 -5.02 16.89 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 C -0.09 -1.71 9.53 -39.02 -0.37 -2.08 16 29 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 32 H 0.13 1.80 6.28 -52.48 -0.33 1.47 16 33 H 0.15 2.89 5.83 -52.48 -0.31 2.59 16 34 H 0.40 7.13 4.54 -40.82 -0.19 6.94 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.38 8.20 5.70 -40.82 -0.23 7.97 16 44 H 0.26 6.58 8.16 -40.82 -0.33 6.25 16 45 H 0.14 2.60 7.65 -52.49 -0.40 2.20 16 LS Contribution 381.37 15.07 5.75 5.75 Total: -1.00 -27.99 381.37 -8.39 -36.38 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -6.41 Total: 13.27 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -1.28 Total: -2.04 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.18 Total: -50.43 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.12 Total: -17.25 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.49 Total: -2.57 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -27.99 -8.39 -36.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135765725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.784 kcal (2) G-P(sol) polarization free energy of solvation -27.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds