Wall clock time and date at job start Wed Apr 1 2020 00:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 117.00356 * 2 1 4 4 C 1.38832 * 119.97680 * 359.97438 * 3 2 1 5 5 C 1.38355 * 120.22680 * 179.97438 * 4 3 2 6 6 Cl 1.73604 * 119.90635 * 179.97438 * 5 4 3 7 7 C 1.38125 * 120.17918 * 0.02562 * 5 4 3 8 8 C 1.39542 * 119.95549 * 0.02562 * 7 5 4 9 9 C 1.47866 * 120.11631 * 179.97438 * 8 7 5 10 10 O 1.21545 * 119.99911 * 179.97438 * 9 8 7 11 11 N 1.34774 * 119.99637 * 0.02562 * 9 8 7 12 12 C 1.46496 * 120.00037 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47377 * 34.99440 * 12 11 9 14 14 C 1.53005 * 109.47007 * 274.99652 * 12 11 9 15 15 C 1.53005 * 109.47482 * 154.99767 * 12 11 9 16 16 C 1.53002 * 109.46762 * 294.99739 * 15 12 11 17 17 H 1.08998 * 109.47249 * 305.00035 * 16 15 12 18 18 C 1.53001 * 109.46798 * 184.99732 * 16 15 12 19 19 N 1.46503 * 109.47011 * 65.00447 * 16 15 12 20 20 C 1.36940 * 119.99777 * 204.99913 * 19 16 15 21 21 H 1.07994 * 119.99870 * 359.97438 * 20 19 16 22 22 C 1.38813 * 119.99994 * 179.97438 * 20 19 16 23 23 N 1.31623 * 119.99657 * 359.97438 * 22 20 19 24 24 Si 1.86790 * 120.00098 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47145 * 60.00107 * 24 22 20 26 26 H 1.48497 * 109.47521 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47340 * 300.00254 * 24 22 20 28 28 C 1.38460 * 119.98141 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46721 * 60.00479 * 1 2 3 30 30 H 1.09002 * 109.47412 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46850 * 300.00425 * 1 2 3 32 32 H 1.08004 * 119.88361 * 0.25532 * 4 3 2 33 33 H 1.08008 * 120.02106 * 179.97438 * 7 5 4 34 34 H 0.96998 * 120.00157 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.46574 * 60.00109 * 14 12 11 36 36 H 1.09003 * 109.46863 * 179.97438 * 14 12 11 37 37 H 1.08997 * 109.47184 * 299.99836 * 14 12 11 38 38 H 1.08998 * 109.46848 * 55.00091 * 15 12 11 39 39 H 1.08995 * 109.47129 * 175.00195 * 15 12 11 40 40 H 1.08998 * 109.47356 * 60.00151 * 18 16 15 41 41 H 1.09003 * 109.47220 * 180.02562 * 18 16 15 42 42 H 1.09003 * 109.47149 * 300.00526 * 18 16 15 43 43 H 0.97000 * 119.99913 * 24.98673 * 19 16 15 44 44 H 0.97001 * 119.99800 * 179.97438 * 23 22 20 45 45 H 1.07999 * 120.08914 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2895 2.3750 -0.0005 5 6 1.9123 3.6104 0.0000 6 17 0.9582 5.0607 -0.0014 7 6 3.2911 3.6929 0.0005 8 6 4.0589 2.5277 0.0000 9 6 5.5352 2.6119 0.0000 10 8 6.2018 1.5956 0.0000 11 7 6.1414 3.8156 0.0010 12 6 7.6040 3.8992 0.0005 13 1 8.0145 3.0800 -0.5900 14 6 8.1209 3.8012 1.4372 15 6 8.0384 5.2341 -0.6080 16 6 7.6299 5.2798 -2.0817 17 1 8.0394 4.4124 -2.5994 18 6 8.1726 6.5591 -2.7219 19 7 6.1685 5.2646 -2.1840 20 6 5.5666 4.7947 -3.3208 21 1 6.1692 4.4357 -4.1419 22 6 4.1819 4.7798 -3.4175 23 7 3.4475 5.2169 -2.4165 24 14 3.3609 4.1394 -4.9683 25 1 3.7510 2.7232 -5.1863 26 1 1.8860 4.2288 -4.8207 27 1 3.7930 4.9563 -6.1307 28 6 3.4288 1.2828 0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.2111 2.3159 0.0032 33 1 3.7747 4.6587 0.0005 34 1 5.6093 4.6266 0.0014 35 1 7.8114 2.8502 1.8706 36 1 9.2092 3.8629 1.4367 37 1 7.7105 4.6203 2.0276 38 1 7.5566 6.0517 -0.0717 39 1 9.1207 5.3349 -0.5277 40 1 9.2598 6.5706 -2.6457 41 1 7.8811 6.5920 -3.7717 42 1 7.7630 7.4265 -2.2041 43 1 5.6273 5.5873 -1.4465 44 1 2.4800 5.2068 -2.4842 45 1 4.0181 0.3777 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135765725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:21 Heat of formation + Delta-G solvation = -56.230820 kcal Electronic energy + Delta-G solvation = -28880.600786 eV Core-core repulsion = 24924.243151 eV Total energy + Delta-G solvation = -3956.357634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.47604 -40.49913 -38.55714 -38.12896 -37.02933 -35.74872 -34.03579 -32.60418 -31.73909 -30.92573 -30.00359 -28.17688 -27.56405 -25.47472 -25.05035 -23.49246 -22.27402 -21.67918 -21.10361 -19.52356 -19.02325 -17.79663 -17.32471 -17.11405 -16.76055 -16.72456 -16.53578 -15.92483 -15.67695 -15.47725 -15.29503 -14.89600 -14.69245 -14.35251 -14.23972 -13.94567 -13.53866 -13.32946 -13.24034 -13.19974 -12.87327 -12.85286 -12.75371 -12.73117 -12.57573 -12.25320 -12.16088 -12.13163 -11.85013 -11.68834 -11.64009 -11.52825 -11.36963 -10.89571 -10.80005 -10.00271 -9.73973 -9.22339 -8.69110 -7.73847 -4.94200 -0.23680 0.33975 1.20664 1.45131 1.49046 1.51286 1.87001 2.13625 2.53755 2.65120 2.85427 3.57869 3.66203 3.85350 3.90130 4.07094 4.15691 4.20837 4.22377 4.28733 4.38396 4.39934 4.44681 4.55199 4.60939 4.72599 4.72951 4.87347 4.91253 4.94546 5.02225 5.11293 5.17235 5.19096 5.22132 5.32509 5.40265 5.45684 5.49228 5.66506 5.70086 5.78236 6.32010 6.48836 6.68698 7.35207 7.57454 8.25361 8.54294 9.45522 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009653 B = 0.005326 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.039437 B = 5256.280765 C = 6482.213688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.327 6.327 3 C 0.117 3.883 4 C -0.178 4.178 5 C -0.005 4.005 6 Cl -0.055 7.055 7 C -0.048 4.048 8 C -0.103 4.103 9 C 0.567 3.433 10 O -0.588 6.588 11 N -0.682 5.682 12 C 0.144 3.856 13 H 0.058 0.942 14 C -0.152 4.152 15 C -0.120 4.120 16 C 0.162 3.838 17 H 0.027 0.973 18 C -0.153 4.153 19 N -0.717 5.717 20 C -0.233 4.233 21 H 0.048 0.952 22 C -0.035 4.035 23 N -0.915 5.915 24 Si 0.924 3.076 25 H -0.303 1.303 26 H -0.295 1.295 27 H -0.292 1.292 28 C -0.111 4.111 29 H 0.059 0.941 30 H 0.125 0.875 31 H 0.071 0.929 32 H 0.162 0.838 33 H 0.143 0.857 34 H 0.405 0.595 35 H 0.039 0.961 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.027 0.973 42 H 0.048 0.952 43 H 0.375 0.625 44 H 0.254 0.746 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.638 -1.425 10.329 10.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.242 6.242 3 C 0.072 3.928 4 C -0.197 4.197 5 C -0.032 4.032 6 Cl -0.026 7.026 7 C -0.068 4.068 8 C -0.106 4.106 9 C 0.354 3.646 10 O -0.471 6.471 11 N -0.333 5.333 12 C 0.040 3.960 13 H 0.076 0.924 14 C -0.210 4.210 15 C -0.158 4.158 16 C 0.053 3.947 17 H 0.045 0.955 18 C -0.213 4.213 19 N -0.361 5.361 20 C -0.365 4.365 21 H 0.067 0.933 22 C -0.231 4.231 23 N -0.564 5.564 24 Si 0.757 3.243 25 H -0.231 1.231 26 H -0.222 1.222 27 H -0.219 1.219 28 C -0.131 4.131 29 H 0.077 0.923 30 H 0.143 0.857 31 H 0.090 0.910 32 H 0.179 0.821 33 H 0.160 0.840 34 H 0.244 0.756 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.128 0.872 40 H 0.086 0.914 41 H 0.046 0.954 42 H 0.067 0.933 43 H 0.210 0.790 44 H 0.064 0.936 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.187 -2.201 10.161 10.464 hybrid contribution -1.421 0.219 -1.425 2.025 sum -2.609 -1.982 8.736 9.330 Atomic orbital electron populations 1.23422 0.76171 1.05962 1.02362 1.86073 1.23682 1.25456 1.88948 1.18485 0.91276 0.84733 0.98347 1.21380 1.01618 0.90009 1.06716 1.20444 0.91737 0.87794 1.03224 1.98349 1.71169 1.36343 1.96706 1.21055 0.91952 0.98327 0.95494 1.19603 0.93239 0.93298 1.04481 1.18092 0.87158 0.83855 0.75459 1.90656 1.66745 1.36231 1.53487 1.45936 1.07922 1.07532 1.71925 1.21015 0.79104 0.98619 0.97240 0.92366 1.22116 1.02375 1.01657 0.94895 1.22138 1.03132 0.95596 0.94937 1.20477 0.84308 0.95379 0.94491 0.95461 1.22263 1.00123 0.99003 0.99865 1.42437 1.00773 1.75699 1.17142 1.19089 0.89658 1.33115 0.94652 0.93343 1.24783 0.96528 1.03225 0.98524 1.69495 1.04456 1.52425 1.30001 0.86001 0.77878 0.77528 0.82844 1.23120 1.22161 1.21893 1.20463 0.92125 0.97868 1.02607 0.92255 0.85651 0.91034 0.82086 0.83987 0.75608 0.94205 0.89404 0.91182 0.90386 0.87231 0.91426 0.95401 0.93282 0.79031 0.93581 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.81 113.37 1.11 1.39 16 2 O -0.33 -9.47 10.49 -92.47 -0.97 -10.44 16 3 C 0.12 3.89 6.68 22.47 0.15 4.04 16 4 C -0.18 -5.50 8.81 22.44 0.20 -5.30 16 5 C -0.01 -0.18 6.31 22.27 0.14 -0.03 16 6 Cl -0.05 -1.76 28.80 -2.72 -0.08 -1.83 16 7 C -0.05 -1.81 7.62 22.56 0.17 -1.64 16 8 C -0.10 -4.07 5.87 -20.10 -0.12 -4.19 16 9 C 0.57 23.39 7.74 86.79 0.67 24.07 16 10 O -0.59 -27.15 16.01 -3.86 -0.06 -27.21 16 11 N -0.68 -24.28 3.75 -445.38 -1.67 -25.95 16 12 C 0.14 4.41 2.57 45.00 0.12 4.53 16 13 H 0.06 2.10 7.58 -2.39 -0.02 2.09 16 14 C -0.15 -3.70 9.48 71.98 0.68 -3.02 16 15 C -0.12 -3.17 4.43 30.60 0.14 -3.04 16 16 C 0.16 5.68 2.89 44.99 0.13 5.81 16 17 H 0.03 1.07 8.08 -2.39 -0.02 1.05 16 18 C -0.15 -4.82 9.49 71.98 0.68 -4.14 16 19 N -0.72 -30.95 3.84 -322.93 -1.24 -32.19 16 20 C -0.23 -11.90 9.93 84.03 0.83 -11.07 16 21 H 0.05 2.60 7.83 -2.91 -0.02 2.57 16 22 C -0.03 -1.80 5.50 84.86 0.47 -1.33 16 23 N -0.92 -45.58 10.71 21.65 0.23 -45.35 16 24 Si 0.92 45.26 29.55 68.60 2.03 47.29 16 25 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 26 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 27 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 28 C -0.11 -4.21 9.53 22.63 0.22 -4.00 16 29 H 0.06 1.06 7.66 -2.39 -0.02 1.04 16 30 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.09 7.65 -2.39 -0.02 1.07 16 32 H 0.16 3.93 6.28 -2.91 -0.02 3.92 16 33 H 0.14 5.52 5.83 -2.91 -0.02 5.50 16 34 H 0.40 14.27 4.54 -92.71 -0.42 13.85 16 35 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.11 2.20 8.14 -2.39 -0.02 2.19 16 40 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.37 16.24 5.70 -92.71 -0.53 15.71 16 44 H 0.25 12.79 8.16 -92.71 -0.76 12.04 16 45 H 0.13 5.12 7.65 -2.91 -0.02 5.10 16 Total: -1.00 -61.65 381.37 3.91 -57.73 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: 0.09 Total: 35.89 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 5.59 Total: 2.06 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -2.68 Total: -103.48 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -1.03 Total: -37.65 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.08 Total: -1.83 kcal Total: -61.65 3.91 -57.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135765725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.502 kcal (2) G-P(sol) polarization free energy of solvation -61.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds