Wall clock time and date at job start Wed Apr 1 2020 00:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 H 1.09005 * 109.46462 * 55.00734 * 5 4 2 7 7 C 1.53005 * 109.46980 * 174.99708 * 5 4 2 8 8 N 1.46490 * 109.47637 * 295.00250 * 5 4 2 9 9 C 1.34775 * 120.00466 * 154.99469 * 8 5 4 10 10 O 1.21779 * 119.99594 * 0.02562 * 9 8 5 11 11 C 1.41712 * 120.00437 * 179.97438 * 9 8 5 12 12 S 1.75669 * 125.09972 * 359.70733 * 11 9 8 13 13 C 1.75556 * 91.21079 * 179.90350 * 12 11 9 14 14 C 1.34199 * 110.67809 * 0.30924 * 13 12 11 15 15 C 1.37147 * 125.10595 * 180.02562 * 11 9 8 16 16 O 1.37654 * 124.48570 * 0.11111 * 15 11 9 17 17 C 1.43380 * 114.51266 * 163.34965 * 16 15 11 18 18 C 1.53225 * 109.14386 * 46.50331 * 17 16 15 19 19 O 1.38254 * 124.14365 * 179.97438 * 14 13 12 20 20 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 21 21 C 1.36944 * 120.00017 * 275.00375 * 20 2 1 22 22 H 1.07997 * 119.99813 * 359.97438 * 21 20 2 23 23 C 1.38806 * 119.99784 * 180.02562 * 21 20 2 24 24 N 1.31621 * 120.00406 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99911 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46961 * 89.99726 * 25 23 21 27 27 H 1.48493 * 109.47324 * 209.99682 * 25 23 21 28 28 H 1.48503 * 109.47003 * 329.99890 * 25 23 21 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 33 33 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 34 34 H 1.09000 * 109.46373 * 60.00502 * 7 5 4 35 35 H 1.08994 * 109.46862 * 179.97438 * 7 5 4 36 36 H 1.08993 * 109.47399 * 300.00897 * 7 5 4 37 37 H 0.97006 * 119.99783 * 335.00694 * 8 5 4 38 38 H 1.08001 * 124.66117 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.52580 * 166.40370 * 17 16 15 40 40 H 1.09004 * 109.52345 * 286.60257 * 17 16 15 41 41 H 1.08991 * 109.52444 * 57.65627 * 18 17 16 42 42 H 1.08996 * 109.52105 * 177.78578 * 18 17 16 43 43 H 0.96995 * 120.00293 * 94.99410 * 20 2 1 44 44 H 0.96997 * 120.00066 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.9954 -0.9924 -0.3867 7 6 4.0852 -1.4384 -2.4924 8 7 3.9481 0.7893 -1.4924 9 6 5.1613 1.2135 -1.0866 10 8 5.9391 0.4306 -0.5717 11 6 5.5321 2.5701 -1.2600 12 16 4.5226 3.8077 -1.9915 13 6 5.7705 5.0193 -1.7531 14 6 6.8505 4.4784 -1.1684 15 6 6.7354 3.1126 -0.8875 16 8 7.7569 2.4082 -0.2915 17 6 9.0323 3.0621 -0.3307 18 6 8.8591 4.5266 0.0850 19 8 7.9970 5.1837 -0.8528 20 7 2.0184 -0.6906 1.1962 21 6 2.1491 -0.0074 2.3758 22 1 1.8926 1.0405 2.4242 23 6 2.6122 -0.6617 3.5090 24 7 2.9253 -1.9388 3.4500 25 14 2.7912 0.2703 5.1180 26 1 1.5237 0.1791 5.8865 27 1 3.8960 -0.3228 5.9134 28 1 3.0960 1.6956 4.8332 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2618 -2.1370 34 1 3.6547 -1.0594 -3.4192 35 1 5.1715 -1.3611 -2.5385 36 1 3.8001 -2.4820 -2.3594 37 1 3.3285 1.4128 -1.9027 38 1 5.6830 6.0563 -2.0419 39 1 9.7170 2.5665 0.3576 40 1 9.4346 3.0157 -1.3427 41 1 8.4165 4.5730 1.0799 42 1 9.8311 5.0197 0.0954 43 1 2.2490 -1.6317 1.1527 44 1 3.2486 -2.3960 4.2420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135852113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:51 Heat of formation + Delta-G solvation = -60.911778 kcal Electronic energy + Delta-G solvation = -28103.736988 eV Core-core repulsion = 24149.220079 eV Total energy + Delta-G solvation = -3954.516910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.18452 -39.47245 -37.22597 -36.76665 -35.67840 -34.33658 -32.14733 -31.09439 -30.01556 -29.30319 -28.51487 -26.26795 -24.99096 -23.94331 -23.53565 -21.69947 -20.52754 -19.69415 -19.35841 -19.13348 -17.40737 -17.24865 -16.89615 -16.48980 -15.76600 -15.31472 -14.99187 -14.91351 -14.56754 -14.53955 -14.30898 -13.88254 -13.67271 -13.54527 -13.23965 -13.03632 -12.76307 -12.61367 -12.08812 -11.93699 -11.67360 -11.57889 -11.48240 -11.27265 -11.16978 -10.98247 -10.91046 -10.77578 -10.54596 -10.35432 -10.16274 -9.83039 -9.59463 -9.54155 -8.80784 -8.78454 -8.54379 -8.12959 -6.84514 -5.65841 -2.93341 0.31924 1.19716 1.42785 2.06056 3.05746 3.27066 3.46306 3.49909 3.54998 3.56759 3.59008 3.95440 4.34337 4.61676 4.66203 4.68711 5.03412 5.11872 5.14877 5.20754 5.29049 5.36724 5.49799 5.55434 5.68735 5.76006 5.80791 5.95700 6.01406 6.08100 6.19972 6.35115 6.42425 6.44655 6.51328 6.63827 6.78819 6.87698 6.91227 7.00045 7.13873 7.79587 7.83383 8.52654 8.59691 9.64030 10.21509 10.55763 11.57051 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009960 B = 0.004113 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.483146 B = 6805.448156 C = 8041.856829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.146 3.854 6 H 0.107 0.893 7 C -0.161 4.161 8 N -0.715 5.715 9 C 0.589 3.411 10 O -0.508 6.508 11 C -0.266 4.266 12 S 0.207 5.793 13 C -0.215 4.215 14 C 0.035 3.965 15 C 0.123 3.877 16 O -0.256 6.256 17 C 0.012 3.988 18 C 0.017 3.983 19 O -0.293 6.293 20 N -0.720 5.720 21 C -0.232 4.232 22 H 0.067 0.933 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.901 3.099 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.388 0.612 38 H 0.180 0.820 39 H 0.126 0.874 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.124 0.876 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.528 13.447 -15.821 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.042 3.958 6 H 0.125 0.875 7 C -0.219 4.219 8 N -0.366 5.366 9 C 0.375 3.625 10 O -0.385 6.385 11 C -0.386 4.386 12 S 0.469 5.531 13 C -0.353 4.353 14 C -0.021 4.021 15 C 0.062 3.938 16 O -0.169 6.169 17 C -0.064 4.064 18 C -0.059 4.059 19 O -0.208 6.208 20 N -0.361 5.361 21 C -0.363 4.363 22 H 0.085 0.915 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.733 3.267 26 H -0.219 1.219 27 H -0.218 1.218 28 H -0.209 1.209 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.222 0.778 38 H 0.198 0.802 39 H 0.144 0.856 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.142 0.858 43 H 0.217 0.783 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.722 12.979 -15.893 21.592 hybrid contribution 1.445 0.624 1.537 2.200 sum 8.167 13.603 -14.356 21.397 Atomic orbital electron populations 1.22455 0.99518 1.00789 0.99752 1.20228 0.91562 0.95567 0.86569 0.93673 1.22175 0.93703 1.02277 0.98827 1.21037 0.95106 0.79672 1.00001 0.87465 1.22184 1.01589 1.00149 0.97980 1.45843 1.15911 1.11866 1.63026 1.15449 0.82615 0.85366 0.79043 1.90910 1.50729 1.54850 1.41989 1.22697 0.99371 0.99917 1.16595 1.83989 1.15037 0.96011 1.58021 1.24874 0.95499 1.04937 1.09945 1.18240 0.89958 0.89125 1.04794 1.18894 0.90036 0.88746 0.96155 1.87254 1.15415 1.41915 1.72270 1.23723 0.85222 0.93438 1.04010 1.23640 0.95786 0.93620 0.92882 1.87027 1.29452 1.43097 1.61257 1.42389 1.77964 1.10551 1.05245 1.19154 1.36219 0.93646 0.87322 0.91543 1.24673 1.02259 0.95939 0.97890 1.69644 1.51080 1.08612 1.28668 0.86271 0.77168 0.78903 0.84377 1.21885 1.21848 1.20932 0.94708 0.93530 0.92920 0.90502 0.92063 0.93156 0.92486 0.91667 0.77805 0.80230 0.85608 0.90398 0.90222 0.85812 0.78329 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.49 37.16 0.35 -2.57 16 2 C 0.17 3.32 2.84 -67.93 -0.19 3.13 16 3 H 0.05 0.91 7.56 -51.93 -0.39 0.52 16 4 C -0.13 -2.06 4.29 -26.73 -0.11 -2.18 16 5 C 0.15 2.49 2.52 -67.93 -0.17 2.32 16 6 H 0.11 2.38 7.05 -51.93 -0.37 2.01 16 7 C -0.16 -2.32 9.48 37.16 0.35 -1.96 16 8 N -0.71 -11.54 4.43 -56.67 -0.25 -11.79 16 9 C 0.59 11.04 7.56 -14.93 -0.11 10.93 16 10 O -0.51 -11.73 15.52 -11.90 -0.18 -11.91 16 11 C -0.27 -4.21 6.25 -38.65 -0.24 -4.45 16 12 S 0.21 2.26 22.17 -107.50 -2.38 -0.12 16 13 C -0.22 -2.30 11.17 29.31 0.33 -1.97 16 14 C 0.04 0.46 6.55 -40.38 -0.26 0.19 16 15 C 0.12 1.92 6.58 -39.35 -0.26 1.66 16 16 O -0.26 -4.16 9.60 -49.14 -0.47 -4.63 16 17 C 0.01 0.13 7.14 37.27 0.27 0.39 16 18 C 0.02 0.15 7.14 37.27 0.27 0.42 16 19 O -0.29 -3.40 10.77 -35.44 -0.38 -3.78 16 20 N -0.72 -18.07 4.49 -53.42 -0.24 -18.31 16 21 C -0.23 -6.59 9.93 -15.06 -0.15 -6.74 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -28.99 13.06 55.49 0.72 -28.26 16 25 Si 0.90 23.42 29.55 -169.99 -5.02 18.39 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 28 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.39 5.14 7.54 -40.82 -0.31 4.83 16 38 H 0.18 1.38 8.06 -52.49 -0.42 0.95 16 39 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.38 10.28 7.80 -40.82 -0.32 9.96 16 44 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 379.18 15.07 5.71 5.71 Total: -1.00 -36.39 379.18 -8.96 -45.35 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -6.43 Total: 10.63 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -0.04 Total: -1.29 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 0.23 Total: -58.36 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -1.04 Total: -20.33 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.02 Total: 18.39 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.38 Total: -0.12 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.39 -8.96 -45.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135852113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.559 kcal (2) G-P(sol) polarization free energy of solvation -36.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds