Wall clock time and date at job start Wed Apr 1 2020 00:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47161 * 2 1 4 4 C 1.52994 * 109.47617 * 120.00489 * 2 1 3 5 5 C 1.52997 * 109.47340 * 184.99848 * 4 2 1 6 6 H 1.09006 * 109.47266 * 304.99924 * 5 4 2 7 7 C 1.53001 * 109.46979 * 185.00184 * 5 4 2 8 8 N 1.46500 * 109.47240 * 64.99980 * 5 4 2 9 9 C 1.34774 * 120.00228 * 204.99628 * 8 5 4 10 10 O 1.21773 * 119.99910 * 0.02562 * 9 8 5 11 11 C 1.41715 * 120.00014 * 179.97438 * 9 8 5 12 12 S 1.75659 * 125.10249 * 359.97438 * 11 9 8 13 13 C 1.75554 * 91.21525 * 179.97438 * 12 11 9 14 14 C 1.34201 * 110.67711 * 359.95845 * 13 12 11 15 15 C 1.37150 * 125.10543 * 179.97438 * 11 9 8 16 16 O 1.37651 * 124.48449 * 0.09722 * 15 11 9 17 17 C 1.43374 * 114.51306 * 163.36048 * 16 15 11 18 18 C 1.53220 * 109.14661 * 46.49587 * 17 16 15 19 19 O 1.38234 * 124.14137 * 180.22371 * 14 13 12 20 20 N 1.46503 * 109.47017 * 240.00614 * 2 1 3 21 21 C 1.36942 * 119.99999 * 84.99768 * 20 2 1 22 22 H 1.08004 * 119.99979 * 0.02562 * 21 20 2 23 23 C 1.38809 * 119.99915 * 180.02562 * 21 20 2 24 24 N 1.31619 * 120.00347 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99896 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47073 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46958 * 119.99684 * 25 23 21 28 28 H 1.48494 * 109.47154 * 239.99933 * 25 23 21 29 29 H 1.09001 * 109.47051 * 299.99252 * 1 2 3 30 30 H 1.08994 * 109.47453 * 59.99635 * 1 2 3 31 31 H 1.09003 * 109.47382 * 179.97438 * 1 2 3 32 32 H 1.09010 * 109.46726 * 64.99997 * 4 2 1 33 33 H 1.08999 * 109.47294 * 305.00365 * 4 2 1 34 34 H 1.08999 * 109.47175 * 60.00400 * 7 5 4 35 35 H 1.09011 * 109.47109 * 180.02562 * 7 5 4 36 36 H 1.08998 * 109.47210 * 299.99988 * 7 5 4 37 37 H 0.97003 * 119.99475 * 25.00008 * 8 5 4 38 38 H 1.07993 * 124.66119 * 179.97438 * 13 12 11 39 39 H 1.09003 * 109.52738 * 166.39309 * 17 16 15 40 40 H 1.08999 * 109.53005 * 286.59367 * 17 16 15 41 41 H 1.09002 * 109.52198 * 57.65512 * 18 17 16 42 42 H 1.09000 * 109.52408 * 177.78488 * 18 17 16 43 43 H 0.96998 * 120.00263 * 264.99859 * 20 2 1 44 44 H 0.96993 * 120.00152 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 1 3.9954 -0.9923 0.3865 7 6 4.0852 -1.4385 2.4921 8 7 3.9480 0.7893 1.4923 9 6 5.1612 1.2135 1.0866 10 8 5.9388 0.4309 0.5710 11 6 5.5316 2.5705 1.2591 12 16 4.5185 3.8100 1.9821 13 6 5.7695 5.0198 1.7516 14 6 6.8509 4.4783 1.1698 15 6 6.7349 3.1131 0.8868 16 8 7.7553 2.4094 0.2880 17 6 8.7493 3.2258 -0.3452 18 6 9.1473 4.3603 0.6046 19 8 8.0013 5.1812 0.8642 20 7 2.0183 -0.6905 -1.1963 21 6 2.1490 -0.0072 -2.3758 22 1 1.8925 1.0408 -2.4241 23 6 2.6112 -0.6616 -3.5094 24 7 2.9233 -1.9389 -3.4507 25 14 2.7888 0.2703 -5.1187 26 1 2.3751 1.6827 -4.9210 27 1 4.2056 0.2274 -5.5616 28 1 1.9277 -0.3583 -6.1523 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7517 -1.7717 1.2053 33 1 1.6055 -0.2620 2.1369 34 1 3.8002 -2.4821 2.3590 35 1 5.1716 -1.3612 2.5383 36 1 3.6547 -1.0597 3.4191 37 1 3.3285 1.4127 1.9028 38 1 5.6812 6.0571 2.0387 39 1 9.6254 2.6198 -0.5761 40 1 8.3434 3.6464 -1.2652 41 1 9.5129 3.9397 1.5414 42 1 9.9313 4.9621 0.1449 43 1 2.2490 -1.6316 -1.1529 44 1 3.2466 -2.3960 -4.2427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135852114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:53 Heat of formation + Delta-G solvation = -61.078409 kcal Electronic energy + Delta-G solvation = -28107.388526 eV Core-core repulsion = 24152.864390 eV Total energy + Delta-G solvation = -3954.524135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.18418 -39.47385 -37.22540 -36.76616 -35.67909 -34.33887 -32.15078 -31.09580 -30.01510 -29.30331 -28.51852 -26.26826 -24.98884 -23.94083 -23.54127 -21.69998 -20.52788 -19.69686 -19.34873 -19.13747 -17.40757 -17.25123 -16.90089 -16.52156 -15.67751 -15.30563 -14.99102 -14.97256 -14.73529 -14.47701 -14.18488 -13.88594 -13.67017 -13.52554 -13.32412 -12.96490 -12.82239 -12.60210 -12.08505 -11.92904 -11.67503 -11.58164 -11.48127 -11.27188 -11.18242 -10.97414 -10.91514 -10.78433 -10.55312 -10.35319 -10.14476 -9.82109 -9.59585 -9.54878 -8.81762 -8.78537 -8.54369 -8.12919 -6.84850 -5.66443 -2.93878 0.31647 1.19707 1.42988 2.05713 3.06288 3.27024 3.46727 3.49405 3.54518 3.56750 3.58980 3.95232 4.34412 4.60921 4.67185 4.68203 5.03177 5.11805 5.15075 5.21136 5.31018 5.36955 5.49667 5.55265 5.68348 5.75983 5.80816 5.95607 6.01359 6.07953 6.19815 6.34958 6.42377 6.44549 6.51185 6.63665 6.78654 6.87587 6.91510 6.99912 7.13673 7.79639 7.83358 8.52054 8.59673 9.63511 10.21059 10.55309 11.56532 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010037 B = 0.004110 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.008190 B = 6811.322429 C = 8059.504453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.146 3.854 6 H 0.107 0.893 7 C -0.161 4.161 8 N -0.715 5.715 9 C 0.589 3.411 10 O -0.508 6.508 11 C -0.266 4.266 12 S 0.207 5.793 13 C -0.216 4.216 14 C 0.036 3.964 15 C 0.122 3.878 16 O -0.257 6.257 17 C 0.011 3.989 18 C 0.019 3.981 19 O -0.292 6.292 20 N -0.720 5.720 21 C -0.231 4.231 22 H 0.067 0.933 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.900 3.100 26 H -0.282 1.282 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.388 0.612 38 H 0.180 0.820 39 H 0.126 0.874 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.124 0.876 43 H 0.383 0.617 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.502 13.471 15.852 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.042 3.958 6 H 0.125 0.875 7 C -0.219 4.219 8 N -0.367 5.367 9 C 0.375 3.625 10 O -0.385 6.385 11 C -0.386 4.386 12 S 0.470 5.530 13 C -0.353 4.353 14 C -0.021 4.021 15 C 0.061 3.939 16 O -0.170 6.170 17 C -0.065 4.065 18 C -0.058 4.058 19 O -0.208 6.208 20 N -0.362 5.362 21 C -0.363 4.363 22 H 0.085 0.915 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.732 3.268 26 H -0.207 1.207 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.222 0.778 38 H 0.198 0.802 39 H 0.144 0.856 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.142 0.858 43 H 0.217 0.783 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.677 13.011 15.916 21.615 hybrid contribution 1.464 0.610 -1.525 2.200 sum 8.141 13.621 14.391 21.422 Atomic orbital electron populations 1.22453 0.99508 1.00792 0.99757 1.20227 0.91566 0.95568 0.86563 0.93666 1.22177 0.93705 1.02278 0.98827 1.21037 0.95101 0.79672 1.00002 0.87469 1.22187 1.01600 1.00147 0.97976 1.45846 1.15928 1.11861 1.63021 1.15448 0.82616 0.85364 0.79050 1.90909 1.50768 1.54853 1.41933 1.22691 0.97608 1.00231 1.18051 1.83989 1.14760 0.95271 1.59001 1.24874 0.96836 1.05245 1.08326 1.18238 0.90147 0.89983 1.03728 1.18892 0.89285 0.89449 0.96234 1.87223 1.31604 1.30471 1.67663 1.23738 0.92976 0.94062 0.95734 1.23628 0.87642 0.94071 1.00421 1.87033 1.15991 1.31441 1.86332 1.42400 1.77950 1.10557 1.05267 1.19202 1.36122 0.93652 0.87292 0.91481 1.24674 1.02309 0.95925 0.97880 1.69652 1.51163 1.08580 1.28590 0.86208 0.77285 0.78817 0.84474 1.20703 1.21992 1.21984 0.94705 0.92916 0.93529 0.90501 0.92058 0.91666 0.92477 0.93154 0.77805 0.80233 0.85597 0.90129 0.90466 0.85826 0.78329 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.49 37.16 0.35 -2.57 16 2 C 0.17 3.32 2.84 -67.93 -0.19 3.13 16 3 H 0.05 0.91 7.56 -51.93 -0.39 0.52 16 4 C -0.13 -2.06 4.29 -26.74 -0.11 -2.18 16 5 C 0.15 2.49 2.52 -67.93 -0.17 2.32 16 6 H 0.11 2.38 7.05 -51.93 -0.37 2.01 16 7 C -0.16 -2.32 9.48 37.16 0.35 -1.97 16 8 N -0.71 -11.53 4.43 -56.67 -0.25 -11.78 16 9 C 0.59 11.03 7.56 -14.93 -0.11 10.92 16 10 O -0.51 -11.73 15.52 -11.89 -0.18 -11.91 16 11 C -0.27 -4.21 6.25 -38.65 -0.24 -4.45 16 12 S 0.21 2.27 22.17 -107.50 -2.38 -0.12 16 13 C -0.22 -2.29 11.17 29.31 0.33 -1.97 16 14 C 0.04 0.46 6.55 -40.38 -0.26 0.20 16 15 C 0.12 1.91 6.58 -39.35 -0.26 1.65 16 16 O -0.26 -4.18 9.60 -49.13 -0.47 -4.65 16 17 C 0.01 0.12 7.14 37.27 0.27 0.39 16 18 C 0.02 0.16 7.14 37.27 0.27 0.43 16 19 O -0.29 -3.38 10.77 -35.38 -0.38 -3.77 16 20 N -0.72 -18.06 4.49 -53.43 -0.24 -18.30 16 21 C -0.23 -6.56 9.93 -15.06 -0.15 -6.71 16 22 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -28.95 13.06 55.49 0.72 -28.23 16 25 Si 0.90 23.37 29.55 -169.99 -5.02 18.35 16 26 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 28 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.21 8.14 -51.92 -0.42 0.78 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.39 5.13 7.54 -40.82 -0.31 4.83 16 38 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.38 10.27 7.80 -40.82 -0.32 9.95 16 44 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 379.18 15.07 5.71 5.71 Total: -1.00 -36.36 379.18 -8.96 -45.32 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -6.43 Total: 10.64 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -0.04 Total: -1.27 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.23 Total: -58.30 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -1.04 Total: -20.33 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.35 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.38 Total: -0.12 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.36 -8.96 -45.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135852114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.758 kcal (2) G-P(sol) polarization free energy of solvation -36.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds