Wall clock time and date at job start Wed Apr 1 2020 00:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47161 * 2 1 4 4 C 1.52994 * 109.47617 * 120.00489 * 2 1 3 5 5 C 1.52997 * 109.47340 * 184.99848 * 4 2 1 6 6 H 1.09006 * 109.47266 * 304.99924 * 5 4 2 7 7 C 1.53001 * 109.46979 * 185.00184 * 5 4 2 8 8 N 1.46500 * 109.47240 * 64.99980 * 5 4 2 9 9 C 1.34774 * 120.00228 * 204.99628 * 8 5 4 10 10 O 1.21773 * 119.99910 * 0.02562 * 9 8 5 11 11 C 1.41715 * 120.00014 * 179.97438 * 9 8 5 12 12 S 1.75659 * 125.10249 * 359.97438 * 11 9 8 13 13 C 1.75554 * 91.21525 * 179.97438 * 12 11 9 14 14 C 1.34201 * 110.67711 * 359.95845 * 13 12 11 15 15 C 1.37150 * 125.10543 * 179.97438 * 11 9 8 16 16 O 1.37651 * 124.48449 * 0.09722 * 15 11 9 17 17 C 1.43374 * 114.51306 * 163.36048 * 16 15 11 18 18 C 1.53220 * 109.14661 * 46.49587 * 17 16 15 19 19 O 1.38234 * 124.14137 * 180.22371 * 14 13 12 20 20 N 1.46503 * 109.47017 * 240.00614 * 2 1 3 21 21 C 1.36942 * 119.99999 * 84.99768 * 20 2 1 22 22 H 1.08004 * 119.99979 * 0.02562 * 21 20 2 23 23 C 1.38809 * 119.99915 * 180.02562 * 21 20 2 24 24 N 1.31619 * 120.00347 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99896 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47073 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46958 * 119.99684 * 25 23 21 28 28 H 1.48494 * 109.47154 * 239.99933 * 25 23 21 29 29 H 1.09001 * 109.47051 * 299.99252 * 1 2 3 30 30 H 1.08994 * 109.47453 * 59.99635 * 1 2 3 31 31 H 1.09003 * 109.47382 * 179.97438 * 1 2 3 32 32 H 1.09010 * 109.46726 * 64.99997 * 4 2 1 33 33 H 1.08999 * 109.47294 * 305.00365 * 4 2 1 34 34 H 1.08999 * 109.47175 * 60.00400 * 7 5 4 35 35 H 1.09011 * 109.47109 * 180.02562 * 7 5 4 36 36 H 1.08998 * 109.47210 * 299.99988 * 7 5 4 37 37 H 0.97003 * 119.99475 * 25.00008 * 8 5 4 38 38 H 1.07993 * 124.66119 * 179.97438 * 13 12 11 39 39 H 1.09003 * 109.52738 * 166.39309 * 17 16 15 40 40 H 1.08999 * 109.53005 * 286.59367 * 17 16 15 41 41 H 1.09002 * 109.52198 * 57.65512 * 18 17 16 42 42 H 1.09000 * 109.52408 * 177.78488 * 18 17 16 43 43 H 0.96998 * 120.00263 * 264.99859 * 20 2 1 44 44 H 0.96993 * 120.00152 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 1 3.9954 -0.9923 0.3865 7 6 4.0852 -1.4385 2.4921 8 7 3.9480 0.7893 1.4923 9 6 5.1612 1.2135 1.0866 10 8 5.9388 0.4309 0.5710 11 6 5.5316 2.5705 1.2591 12 16 4.5185 3.8100 1.9821 13 6 5.7695 5.0198 1.7516 14 6 6.8509 4.4783 1.1698 15 6 6.7349 3.1131 0.8868 16 8 7.7553 2.4094 0.2880 17 6 8.7493 3.2258 -0.3452 18 6 9.1473 4.3603 0.6046 19 8 8.0013 5.1812 0.8642 20 7 2.0183 -0.6905 -1.1963 21 6 2.1490 -0.0072 -2.3758 22 1 1.8925 1.0408 -2.4241 23 6 2.6112 -0.6616 -3.5094 24 7 2.9233 -1.9389 -3.4507 25 14 2.7888 0.2703 -5.1187 26 1 2.3751 1.6827 -4.9210 27 1 4.2056 0.2274 -5.5616 28 1 1.9277 -0.3583 -6.1523 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7517 -1.7717 1.2053 33 1 1.6055 -0.2620 2.1369 34 1 3.8002 -2.4821 2.3590 35 1 5.1716 -1.3612 2.5383 36 1 3.6547 -1.0597 3.4191 37 1 3.3285 1.4127 1.9028 38 1 5.6812 6.0571 2.0387 39 1 9.6254 2.6198 -0.5761 40 1 8.3434 3.6464 -1.2652 41 1 9.5129 3.9397 1.5414 42 1 9.9313 4.9621 0.1449 43 1 2.2490 -1.6316 -1.1529 44 1 3.2466 -2.3960 -4.2427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135852114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:53 Heat of formation + Delta-G solvation = -87.716234 kcal Electronic energy + Delta-G solvation = -28108.543628 eV Core-core repulsion = 24152.864390 eV Total energy + Delta-G solvation = -3955.679238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.13855 -40.82766 -38.42704 -38.03724 -36.71173 -36.01332 -34.04688 -32.52429 -30.83553 -30.58488 -30.21087 -27.59684 -26.10346 -25.63269 -24.76736 -22.89965 -21.92308 -21.22994 -20.33927 -20.23893 -19.25017 -18.36246 -18.10141 -17.55051 -16.95632 -16.60340 -16.37424 -16.13391 -15.86428 -15.65457 -15.61218 -15.41492 -15.20608 -14.79117 -14.53090 -14.28076 -14.13281 -13.73491 -13.60028 -13.34586 -13.16442 -12.95384 -12.80824 -12.67244 -12.45569 -12.25581 -12.16044 -12.12972 -12.03273 -11.84102 -11.79705 -11.56036 -11.42077 -11.05378 -10.92218 -10.10687 -9.63608 -9.03612 -8.94387 -7.92349 -5.17290 -0.72986 0.26348 0.49123 1.05771 1.39681 1.42203 1.50257 2.10911 2.16459 2.30924 2.46446 2.55190 3.07518 3.42272 3.51515 3.80355 3.87990 3.95039 4.01252 4.07032 4.14147 4.26947 4.38240 4.40551 4.50087 4.54976 4.56662 4.69029 4.79550 4.83494 4.85854 4.94065 5.04918 5.11895 5.23737 5.34939 5.42123 5.51117 5.58865 5.62831 5.66313 5.97202 6.31270 6.54635 7.26749 7.36796 8.17431 8.36932 9.31826 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010037 B = 0.004110 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.008190 B = 6811.322429 C = 8059.504453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.162 3.838 3 H 0.040 0.960 4 C -0.118 4.118 5 C 0.147 3.853 6 H 0.046 0.954 7 C -0.150 4.150 8 N -0.703 5.703 9 C 0.583 3.417 10 O -0.571 6.571 11 C -0.322 4.322 12 S 0.278 5.722 13 C -0.192 4.192 14 C 0.013 3.987 15 C 0.112 3.888 16 O -0.299 6.299 17 C 0.000 4.000 18 C 0.022 3.978 19 O -0.298 6.298 20 N -0.732 5.732 21 C -0.223 4.223 22 H 0.069 0.931 23 C -0.079 4.079 24 N -0.969 5.969 25 Si 0.958 3.042 26 H -0.266 1.266 27 H -0.303 1.303 28 H -0.289 1.289 29 H 0.078 0.922 30 H 0.029 0.971 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.084 0.916 37 H 0.405 0.595 38 H 0.218 0.782 39 H 0.148 0.852 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.163 0.837 43 H 0.370 0.630 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.266 16.512 18.176 25.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.054 3.946 3 H 0.058 0.942 4 C -0.156 4.156 5 C 0.043 3.957 6 H 0.065 0.935 7 C -0.209 4.209 8 N -0.355 5.355 9 C 0.372 3.628 10 O -0.452 6.452 11 C -0.442 4.442 12 S 0.541 5.459 13 C -0.329 4.329 14 C -0.043 4.043 15 C 0.050 3.950 16 O -0.212 6.212 17 C -0.075 4.075 18 C -0.053 4.053 19 O -0.214 6.214 20 N -0.372 5.372 21 C -0.355 4.355 22 H 0.087 0.913 23 C -0.271 4.271 24 N -0.621 5.621 25 Si 0.789 3.211 26 H -0.191 1.191 27 H -0.231 1.231 28 H -0.216 1.216 29 H 0.097 0.903 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.053 0.947 36 H 0.103 0.897 37 H 0.241 0.759 38 H 0.235 0.765 39 H 0.165 0.835 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.180 0.820 43 H 0.202 0.798 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.371 16.113 18.299 24.967 hybrid contribution 1.849 -0.232 -2.155 2.849 sum 7.221 15.881 16.144 23.769 Atomic orbital electron populations 1.22291 0.97360 1.00974 1.00838 1.20537 0.92882 0.95149 0.86016 0.94188 1.22100 0.92348 1.02533 0.98666 1.20877 0.95928 0.80397 0.98520 0.93519 1.22084 1.00249 1.00365 0.98164 1.45710 1.15533 1.11880 1.62366 1.15919 0.82533 0.86331 0.78017 1.90860 1.52564 1.56896 1.44926 1.22712 0.99705 1.00387 1.21366 1.83570 1.12899 0.92663 1.56758 1.25457 0.95526 1.06686 1.05227 1.18277 0.91606 0.88981 1.05478 1.19355 0.89089 0.90781 0.95778 1.87155 1.32865 1.33124 1.68081 1.24080 0.92611 0.95013 0.95835 1.23849 0.87435 0.93695 1.00370 1.87009 1.16183 1.31745 1.86475 1.42613 1.78207 1.10109 1.06287 1.19542 1.33809 0.93739 0.88450 0.91283 1.25418 1.03625 0.96856 1.01156 1.69802 1.53243 1.10067 1.28940 0.85273 0.76456 0.78470 0.80924 1.19065 1.23067 1.21646 0.90275 0.95128 0.93806 0.90162 0.87290 0.90831 0.94687 0.89713 0.75871 0.76520 0.83456 0.90744 0.89916 0.81958 0.79819 0.94430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 9.49 71.98 0.68 -4.42 16 2 C 0.16 6.12 2.84 44.99 0.13 6.24 16 3 H 0.04 1.55 7.56 -2.39 -0.02 1.54 16 4 C -0.12 -3.48 4.29 30.59 0.13 -3.35 16 5 C 0.15 5.07 2.52 44.99 0.11 5.18 16 6 H 0.05 2.21 7.05 -2.38 -0.02 2.20 16 7 C -0.15 -4.26 9.48 71.98 0.68 -3.58 16 8 N -0.70 -22.64 4.43 -451.39 -2.00 -24.64 16 9 C 0.58 22.86 7.56 85.10 0.64 23.50 16 10 O -0.57 -28.59 15.52 11.69 0.18 -28.40 16 11 C -0.32 -10.33 6.25 22.87 0.14 -10.18 16 12 S 0.28 5.37 22.17 -56.49 -1.25 4.12 16 13 C -0.19 -3.47 11.17 66.90 0.75 -2.73 16 14 C 0.01 0.31 6.55 21.75 0.14 0.45 16 15 C 0.11 3.58 6.58 22.42 0.15 3.73 16 16 O -0.30 -10.32 9.60 -90.50 -0.87 -11.19 16 17 C 0.00 -0.01 7.14 72.06 0.51 0.51 16 18 C 0.02 0.35 7.14 72.06 0.51 0.86 16 19 O -0.30 -6.37 10.77 -112.89 -1.22 -7.59 16 20 N -0.73 -37.51 4.49 -322.94 -1.45 -38.96 16 21 C -0.22 -12.91 9.93 84.03 0.83 -12.07 16 22 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 23 C -0.08 -4.78 5.50 84.86 0.47 -4.32 16 24 N -0.97 -62.67 13.06 21.65 0.28 -62.38 16 25 Si 0.96 49.27 29.55 68.60 2.03 51.29 16 26 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.30 -15.92 7.11 99.48 0.71 -15.21 16 28 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.11 2.23 8.14 -2.39 -0.02 2.22 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.40 9.94 7.54 -92.71 -0.70 9.24 16 38 H 0.22 2.23 8.06 -2.91 -0.02 2.20 16 39 H 0.15 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.16 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.37 20.66 7.80 -92.71 -0.72 19.94 16 44 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -86.31 379.18 1.21 -85.10 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: -0.39 Total: 32.83 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 5.89 Total: -0.17 kcal Atomic # 7 Polarization: -122.82 SS G_CDS: -3.17 Total: -125.99 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -1.90 Total: -47.18 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 2.03 Total: 51.29 kcal Atomic # 16 Polarization: 5.37 SS G_CDS: -1.25 Total: 4.12 kcal Total: -86.31 1.21 -85.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135852114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.611 kcal (2) G-P(sol) polarization free energy of solvation -86.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds