Wall clock time and date at job start Wed Apr 1 2020 00:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21778 * 120.00403 * 0.02562 * 9 8 5 11 11 C 1.41722 * 119.99845 * 180.02562 * 9 8 5 12 12 S 1.75655 * 125.10083 * 359.69872 * 11 9 8 13 13 C 1.75567 * 91.20931 * 179.90758 * 12 11 9 14 14 C 1.34200 * 110.67591 * 0.30937 * 13 12 11 15 15 C 1.37153 * 125.10173 * 179.97438 * 11 9 8 16 16 O 1.37655 * 124.48913 * 0.11030 * 15 11 9 17 17 C 1.43373 * 114.51575 * 163.34644 * 16 15 11 18 18 C 1.53217 * 109.14333 * 46.50472 * 17 16 15 19 19 O 1.38247 * 124.13730 * 179.97438 * 14 13 12 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 30 30 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 31 31 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 35 35 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 36 36 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 37 37 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 38 38 H 1.08001 * 124.66130 * 180.08144 * 13 12 11 39 39 H 1.09004 * 109.52537 * 166.39760 * 17 16 15 40 40 H 1.08994 * 109.52880 * 286.59639 * 17 16 15 41 41 H 1.09002 * 109.52678 * 57.65316 * 18 17 16 42 42 H 1.08999 * 109.52536 * 177.78202 * 18 17 16 43 43 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 44 44 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9884 -0.0813 -0.2548 11 6 5.9446 -1.6887 1.3674 12 16 5.1777 -3.0120 2.2313 13 6 6.5640 -3.1687 3.2972 14 6 7.5045 -2.2628 2.9877 15 6 7.1753 -1.4285 1.9140 16 8 8.0318 -0.4451 1.4732 17 6 9.0717 -0.1030 2.3991 18 6 9.7049 -1.3887 2.9410 19 8 8.7110 -2.1394 3.6512 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 4.1540 0.8503 5.2062 27 1 1.7835 1.3605 5.1727 28 1 2.5735 -0.6603 6.2554 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.7724 -2.2740 -2.6699 35 1 3.6264 -0.6885 -3.4657 36 1 5.1509 -1.1482 -2.6697 37 1 3.6648 -2.0583 0.2386 38 1 6.6467 -3.8920 4.0949 39 1 9.8313 0.4909 1.8907 40 1 8.6505 0.4715 3.2241 41 1 10.0877 -1.9838 2.1119 42 1 10.5227 -1.1357 3.6158 43 1 2.2490 -1.6318 1.1526 44 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135852116.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:59 Heat of formation + Delta-G solvation = -51.544545 kcal Electronic energy + Delta-G solvation = -29310.778335 eV Core-core repulsion = 25356.667619 eV Total energy + Delta-G solvation = -3954.110716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.47336 -39.21049 -37.00111 -36.41453 -34.97466 -34.30769 -32.60622 -30.89901 -29.47318 -28.83650 -28.29816 -26.41326 -24.38215 -23.70097 -23.29078 -21.40436 -20.41061 -20.06664 -18.75667 -18.49194 -17.58553 -16.71435 -16.42502 -16.02243 -15.42314 -15.14105 -14.64627 -14.50459 -14.37416 -14.26955 -13.89119 -13.78042 -13.60039 -13.15143 -13.10442 -12.99632 -12.57197 -12.27527 -12.16051 -11.94421 -11.77080 -11.65329 -11.17766 -10.83431 -10.81095 -10.67066 -10.53926 -10.41379 -10.37002 -10.31001 -10.18268 -10.05035 -9.30959 -9.20545 -9.08520 -8.41095 -7.88584 -7.44138 -6.80778 -6.29769 -3.15550 1.07451 2.13942 2.31655 2.80212 3.47249 3.52458 3.63003 3.72574 3.79285 3.94566 4.08937 4.53543 4.56156 5.00490 5.04949 5.05669 5.10410 5.31099 5.36919 5.48352 5.48957 5.60290 5.67751 5.75842 5.84148 5.90782 5.93494 6.00022 6.04849 6.08500 6.12769 6.28680 6.37716 6.39590 6.53175 6.63412 6.73596 6.92699 7.09617 7.16018 7.62285 7.64437 8.16988 8.52946 8.96422 9.00689 9.84003 9.99360 11.15674 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010680 B = 0.005822 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.122590 B = 4808.268515 C = 6308.701362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.172 3.828 3 H 0.052 0.948 4 C -0.135 4.135 5 C 0.152 3.848 6 H 0.085 0.915 7 C -0.162 4.162 8 N -0.707 5.707 9 C 0.604 3.396 10 O -0.543 6.543 11 C -0.300 4.300 12 S 0.338 5.662 13 C -0.249 4.249 14 C 0.015 3.985 15 C 0.094 3.906 16 O -0.268 6.268 17 C 0.015 3.985 18 C 0.022 3.978 19 O -0.300 6.300 20 N -0.725 5.725 21 C -0.284 4.284 22 H 0.067 0.933 23 C -0.055 4.055 24 N -0.908 5.908 25 Si 1.073 2.927 26 H -0.296 1.296 27 H -0.296 1.296 28 H -0.286 1.286 29 H 0.053 0.947 30 H 0.039 0.961 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.391 0.609 38 H 0.167 0.833 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.114 0.886 43 H 0.361 0.639 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.870 -2.731 -5.697 8.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.063 3.937 3 H 0.070 0.930 4 C -0.174 4.174 5 C 0.047 3.953 6 H 0.103 0.897 7 C -0.220 4.220 8 N -0.360 5.360 9 C 0.393 3.607 10 O -0.424 6.424 11 C -0.423 4.423 12 S 0.608 5.392 13 C -0.390 4.390 14 C -0.042 4.042 15 C 0.032 3.968 16 O -0.182 6.182 17 C -0.062 4.062 18 C -0.055 4.055 19 O -0.216 6.216 20 N -0.368 5.368 21 C -0.415 4.415 22 H 0.085 0.915 23 C -0.251 4.251 24 N -0.557 5.557 25 Si 0.905 3.095 26 H -0.224 1.224 27 H -0.222 1.222 28 H -0.212 1.212 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.227 0.773 38 H 0.185 0.815 39 H 0.133 0.867 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.132 0.868 43 H 0.195 0.805 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.214 -2.703 -4.604 7.463 hybrid contribution 0.823 0.588 -0.854 1.324 sum 6.037 -2.115 -5.459 8.409 Atomic orbital electron populations 1.22378 0.98863 1.00763 1.00204 1.20284 0.91796 0.95862 0.85791 0.93002 1.22240 0.94269 1.01472 0.99414 1.20771 0.92157 0.97427 0.84907 0.89741 1.22207 1.02020 1.00709 0.97113 1.45850 1.17926 1.37792 1.34409 1.15426 0.80937 0.82627 0.81709 1.90774 1.61790 1.30248 1.59553 1.22501 0.98173 1.13116 1.08496 1.84487 1.10202 1.25302 1.19233 1.24943 0.97706 1.05596 1.10723 1.17957 0.89302 0.99238 0.97667 1.18513 0.90895 0.91443 0.95997 1.87093 1.38979 1.52437 1.39683 1.23541 0.91115 0.96829 0.94744 1.23452 0.90917 0.92884 0.98229 1.86973 1.19855 1.72134 1.42594 1.42607 1.78248 1.09413 1.06578 1.20277 1.37367 0.95197 0.88675 0.91476 1.25581 1.00487 0.97630 1.01372 1.70983 1.49601 1.08045 1.27079 0.83273 0.76011 0.74417 0.75830 1.22374 1.22229 1.21176 0.92752 0.94246 0.93635 0.91864 0.90481 0.92867 0.92102 0.92200 0.77282 0.81514 0.86718 0.90981 0.91181 0.86838 0.80493 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.49 37.16 0.35 -2.35 16 2 C 0.17 3.16 2.89 -67.93 -0.20 2.96 16 3 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 4 C -0.14 -2.03 4.43 -26.73 -0.12 -2.15 16 5 C 0.15 2.56 2.57 -67.93 -0.17 2.38 16 6 H 0.08 1.62 7.57 -51.93 -0.39 1.22 16 7 C -0.16 -2.28 9.48 37.16 0.35 -1.93 16 8 N -0.71 -13.52 3.79 -56.67 -0.21 -13.74 16 9 C 0.60 13.45 7.56 -14.93 -0.11 13.34 16 10 O -0.54 -13.47 15.52 -11.89 -0.18 -13.65 16 11 C -0.30 -6.52 6.25 -38.65 -0.24 -6.76 16 12 S 0.34 6.50 18.42 -107.50 -1.98 4.52 16 13 C -0.25 -4.65 11.17 29.31 0.33 -4.32 16 14 C 0.02 0.30 6.55 -40.38 -0.26 0.03 16 15 C 0.09 2.01 6.58 -39.35 -0.26 1.75 16 16 O -0.27 -5.51 9.60 -49.15 -0.47 -5.98 16 17 C 0.01 0.22 7.14 37.27 0.27 0.48 16 18 C 0.02 0.29 7.14 37.27 0.27 0.56 16 19 O -0.30 -5.22 10.77 -35.42 -0.38 -5.61 16 20 N -0.73 -15.94 3.84 -53.43 -0.21 -16.15 16 21 C -0.28 -7.24 9.93 -15.06 -0.15 -7.39 16 22 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 23 C -0.05 -1.42 5.50 -17.43 -0.10 -1.52 16 24 N -0.91 -23.41 11.56 55.49 0.64 -22.76 16 25 Si 1.07 25.09 29.92 -169.99 -5.09 20.00 16 26 H -0.30 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.30 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.39 7.28 5.44 -40.82 -0.22 7.06 16 38 H 0.17 2.70 8.06 -52.49 -0.42 2.27 16 39 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.36 7.90 4.54 -40.82 -0.19 7.71 16 44 H 0.25 6.12 5.18 -40.82 -0.21 5.91 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -31.55 365.81 -8.55 -40.10 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -6.13 Total: 12.66 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.05 Total: -4.91 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.22 Total: -52.65 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -1.04 Total: -25.24 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.09 Total: 20.00 kcal Atomic # 16 Polarization: 6.50 SS G_CDS: -1.98 Total: 4.52 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.55 -8.55 -40.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135852116.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.443 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds