Wall clock time and date at job start Wed Apr 1 2020 00:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21778 * 120.00403 * 0.02562 * 9 8 5 11 11 C 1.41722 * 119.99845 * 180.02562 * 9 8 5 12 12 S 1.75655 * 125.10083 * 359.69872 * 11 9 8 13 13 C 1.75567 * 91.20931 * 179.90758 * 12 11 9 14 14 C 1.34200 * 110.67591 * 0.30937 * 13 12 11 15 15 C 1.37153 * 125.10173 * 179.97438 * 11 9 8 16 16 O 1.37655 * 124.48913 * 0.11030 * 15 11 9 17 17 C 1.43373 * 114.51575 * 163.34644 * 16 15 11 18 18 C 1.53217 * 109.14333 * 46.50472 * 17 16 15 19 19 O 1.38247 * 124.13730 * 179.97438 * 14 13 12 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 30 30 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 31 31 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 35 35 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 36 36 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 37 37 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 38 38 H 1.08001 * 124.66130 * 180.08144 * 13 12 11 39 39 H 1.09004 * 109.52537 * 166.39760 * 17 16 15 40 40 H 1.08994 * 109.52880 * 286.59639 * 17 16 15 41 41 H 1.09002 * 109.52678 * 57.65316 * 18 17 16 42 42 H 1.08999 * 109.52536 * 177.78202 * 18 17 16 43 43 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 44 44 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9884 -0.0813 -0.2548 11 6 5.9446 -1.6887 1.3674 12 16 5.1777 -3.0120 2.2313 13 6 6.5640 -3.1687 3.2972 14 6 7.5045 -2.2628 2.9877 15 6 7.1753 -1.4285 1.9140 16 8 8.0318 -0.4451 1.4732 17 6 9.0717 -0.1030 2.3991 18 6 9.7049 -1.3887 2.9410 19 8 8.7110 -2.1394 3.6512 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 4.1540 0.8503 5.2062 27 1 1.7835 1.3605 5.1727 28 1 2.5735 -0.6603 6.2554 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.7724 -2.2740 -2.6699 35 1 3.6264 -0.6885 -3.4657 36 1 5.1509 -1.1482 -2.6697 37 1 3.6648 -2.0583 0.2386 38 1 6.6467 -3.8920 4.0949 39 1 9.8313 0.4909 1.8907 40 1 8.6505 0.4715 3.2241 41 1 10.0877 -1.9838 2.1119 42 1 10.5227 -1.1357 3.6158 43 1 2.2490 -1.6318 1.1526 44 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135852116.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:59 Heat of formation + Delta-G solvation = -71.668102 kcal Electronic energy + Delta-G solvation = -29311.650958 eV Core-core repulsion = 25356.667619 eV Total energy + Delta-G solvation = -3954.983339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.91650 -40.78099 -38.53167 -37.86870 -36.46802 -35.94023 -34.27954 -32.42842 -30.70610 -30.42648 -29.84694 -27.67709 -25.88298 -25.52923 -24.60528 -22.84082 -21.86971 -21.59234 -20.19020 -19.97572 -19.42075 -18.16206 -17.92913 -17.45137 -16.84062 -16.76777 -16.14871 -16.05234 -15.95583 -15.71529 -15.48013 -15.27424 -15.19825 -14.64350 -14.52031 -14.38848 -13.97294 -13.62469 -13.53904 -13.35880 -13.10195 -12.90212 -12.80094 -12.55193 -12.24055 -12.15338 -12.00801 -11.92343 -11.81527 -11.75587 -11.65920 -11.62448 -11.11107 -10.94735 -10.86603 -10.01528 -9.43248 -9.09121 -8.44810 -8.24223 -5.08943 -0.49173 0.59412 0.79038 1.25848 1.57128 1.63667 1.76807 2.21138 2.34524 2.49044 2.61768 2.69869 3.29779 3.51056 3.64632 3.72631 3.84022 3.96234 4.05412 4.08059 4.24764 4.34572 4.41403 4.47804 4.48697 4.57513 4.60655 4.65862 4.76156 4.79221 4.83501 4.99043 5.03761 5.05402 5.13385 5.30986 5.33063 5.54254 5.66253 5.70424 5.74818 6.17659 6.56937 6.65132 7.20272 7.31508 8.05263 8.18489 9.24606 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010680 B = 0.005822 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.122590 B = 4808.268515 C = 6308.701362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.165 3.835 3 H 0.026 0.974 4 C -0.121 4.121 5 C 0.146 3.854 6 H 0.055 0.945 7 C -0.151 4.151 8 N -0.697 5.697 9 C 0.596 3.404 10 O -0.580 6.580 11 C -0.333 4.333 12 S 0.353 5.647 13 C -0.240 4.240 14 C 0.007 3.993 15 C 0.087 3.913 16 O -0.297 6.297 17 C 0.003 3.997 18 C 0.020 3.980 19 O -0.307 6.307 20 N -0.731 5.731 21 C -0.305 4.305 22 H 0.047 0.953 23 C -0.087 4.087 24 N -0.925 5.925 25 Si 1.102 2.898 26 H -0.308 1.308 27 H -0.286 1.286 28 H -0.285 1.285 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.036 0.964 37 H 0.394 0.606 38 H 0.195 0.805 39 H 0.153 0.847 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.160 0.840 43 H 0.360 0.640 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.506 -3.814 -6.345 9.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.057 3.943 3 H 0.044 0.956 4 C -0.159 4.159 5 C 0.042 3.958 6 H 0.073 0.927 7 C -0.209 4.209 8 N -0.348 5.348 9 C 0.386 3.614 10 O -0.464 6.464 11 C -0.455 4.455 12 S 0.622 5.378 13 C -0.380 4.380 14 C -0.049 4.049 15 C 0.023 3.977 16 O -0.212 6.212 17 C -0.072 4.072 18 C -0.056 4.056 19 O -0.223 6.223 20 N -0.375 5.375 21 C -0.437 4.437 22 H 0.065 0.935 23 C -0.281 4.281 24 N -0.575 5.575 25 Si 0.933 3.067 26 H -0.237 1.237 27 H -0.212 1.212 28 H -0.210 1.210 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.132 0.868 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.055 0.945 37 H 0.231 0.769 38 H 0.213 0.787 39 H 0.170 0.830 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.177 0.823 43 H 0.194 0.806 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.835 -3.800 -5.275 8.736 hybrid contribution 0.892 0.928 -0.677 1.454 sum 6.727 -2.872 -5.952 9.430 Atomic orbital electron populations 1.22226 0.97141 1.01159 1.00541 1.20464 0.92985 0.94749 0.86139 0.95558 1.22170 0.92560 1.02249 0.98937 1.20982 0.93503 0.95864 0.85479 0.92716 1.22108 1.00591 1.02005 0.96226 1.45879 1.16905 1.37452 1.34610 1.15674 0.81650 0.82332 0.81789 1.90730 1.62938 1.31895 1.60815 1.22789 0.99195 1.14182 1.09303 1.84328 1.10232 1.24109 1.19097 1.25371 0.97042 1.05370 1.10213 1.18049 0.90566 0.99007 0.97309 1.18909 0.90937 0.91713 0.96093 1.87049 1.40117 1.52219 1.41766 1.23975 0.90627 0.98225 0.94421 1.23828 0.90583 0.91543 0.99604 1.86962 1.19509 1.72788 1.43042 1.42570 1.78967 1.09236 1.06685 1.20182 1.38672 0.94542 0.90289 0.93531 1.26208 1.00738 0.98217 1.02953 1.70991 1.51029 1.07944 1.27515 0.82868 0.75354 0.74097 0.74412 1.23698 1.21226 1.21042 0.95282 0.91017 0.93103 0.90294 0.86814 0.91065 0.89156 0.94468 0.76949 0.78748 0.82959 0.91729 0.90109 0.82267 0.80598 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.85 9.49 71.98 0.68 -4.17 16 2 C 0.16 6.03 2.89 44.99 0.13 6.16 16 3 H 0.03 1.09 8.08 -2.38 -0.02 1.07 16 4 C -0.12 -3.38 4.43 30.60 0.14 -3.25 16 5 C 0.15 4.83 2.57 44.99 0.12 4.95 16 6 H 0.05 2.15 7.57 -2.39 -0.02 2.13 16 7 C -0.15 -4.00 9.48 71.98 0.68 -3.31 16 8 N -0.70 -27.01 3.79 -451.38 -1.71 -28.72 16 9 C 0.60 27.35 7.56 85.10 0.64 28.00 16 10 O -0.58 -29.92 15.52 11.67 0.18 -29.73 16 11 C -0.33 -14.71 6.25 22.88 0.14 -14.56 16 12 S 0.35 13.50 18.42 -56.49 -1.04 12.46 16 13 C -0.24 -8.65 11.17 66.90 0.75 -7.90 16 14 C 0.01 0.28 6.55 21.75 0.14 0.42 16 15 C 0.09 3.73 6.58 22.42 0.15 3.88 16 16 O -0.30 -12.25 9.60 -90.55 -0.87 -13.12 16 17 C 0.00 0.08 7.14 72.05 0.51 0.60 16 18 C 0.02 0.47 7.14 72.05 0.51 0.98 16 19 O -0.31 -10.04 10.77 -113.04 -1.22 -11.26 16 20 N -0.73 -32.67 3.84 -322.94 -1.24 -33.92 16 21 C -0.30 -16.05 9.93 84.03 0.83 -15.22 16 22 H 0.05 2.57 7.83 -2.91 -0.02 2.55 16 23 C -0.09 -4.60 5.50 84.86 0.47 -4.13 16 24 N -0.92 -48.10 11.56 21.65 0.25 -47.85 16 25 Si 1.10 51.77 29.92 68.60 2.05 53.82 16 26 H -0.31 -14.95 7.11 99.48 0.71 -14.24 16 27 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 28 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 29 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.39 14.75 5.44 -92.71 -0.50 14.24 16 38 H 0.20 5.80 8.06 -2.91 -0.02 5.78 16 39 H 0.15 3.02 8.14 -2.39 -0.02 3.00 16 40 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.16 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.36 15.90 4.54 -92.71 -0.42 15.48 16 44 H 0.25 12.45 5.18 -92.71 -0.48 11.97 16 Total: -1.00 -71.83 365.81 2.71 -69.12 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: 0.40 Total: 36.73 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 5.90 Total: -7.55 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -2.70 Total: -110.48 kcal Atomic # 8 Polarization: -52.21 SS G_CDS: -1.91 Total: -54.11 kcal Atomic # 14 Polarization: 51.77 SS G_CDS: 2.05 Total: 53.82 kcal Atomic # 16 Polarization: 13.50 SS G_CDS: -1.04 Total: 12.46 kcal Total: -71.83 2.71 -69.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135852116.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.544 kcal (2) G-P(sol) polarization free energy of solvation -71.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds