Wall clock time and date at job start Wed Apr 1 2020 00:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21281 * 120.00363 * 0.02562 * 9 8 5 11 11 C 1.50707 * 119.99794 * 180.02562 * 9 8 5 12 12 O 1.42902 * 109.46899 * 179.97438 * 11 9 8 13 13 C 1.35921 * 116.99987 * 179.97438 * 12 11 9 14 14 C 1.38716 * 120.04101 * 359.72794 * 13 12 11 15 15 C 1.38150 * 119.95511 * 179.78456 * 14 13 12 16 16 C 1.38367 * 120.04205 * 0.46926 * 15 14 13 17 17 Cl 1.73597 * 119.95681 * 179.76385 * 16 15 14 18 18 C 1.38365 * 120.08393 * 359.78530 * 16 15 14 19 19 C 1.38141 * 120.04158 * 359.97438 * 18 16 15 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 30 30 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 35 35 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 36 36 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 37 37 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 38 38 H 1.08997 * 109.46881 * 299.99970 * 11 9 8 39 39 H 1.08997 * 109.47052 * 60.00335 * 11 9 8 40 40 H 1.08006 * 120.02435 * 0.02638 * 14 13 12 41 41 H 1.08002 * 119.97839 * 180.23309 * 15 14 13 42 42 H 1.08002 * 119.97635 * 179.97438 * 18 16 15 43 43 H 1.08003 * 120.01575 * 179.97438 * 19 18 16 44 44 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 45 45 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9859 -0.0850 -0.2527 11 6 5.9807 -1.7329 1.4368 12 8 7.2692 -1.1888 1.7297 13 6 7.9558 -1.7489 2.7604 14 6 7.3981 -2.7967 3.4783 15 6 8.0994 -3.3676 4.5227 16 6 9.3532 -2.8886 4.8590 17 17 10.2299 -3.6037 6.1757 18 6 9.9088 -1.8401 4.1474 19 6 9.2128 -1.2698 3.0993 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 3.2931 -0.6500 6.1700 27 1 3.7495 1.3891 4.9391 28 1 1.4684 0.8113 5.5254 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.7724 -2.2740 -2.6699 35 1 3.6264 -0.6885 -3.4657 36 1 5.1509 -1.1482 -2.6697 37 1 3.6648 -2.0583 0.2386 38 1 5.3354 -1.6299 2.3092 39 1 6.0816 -2.7879 1.1820 40 1 6.4179 -3.1685 3.2184 41 1 7.6671 -4.1859 5.0794 42 1 10.8874 -1.4672 4.4117 43 1 9.6467 -0.4511 2.5444 44 1 2.2490 -1.6318 1.1526 45 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136067415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:43 Heat of formation + Delta-G solvation = -45.284823 kcal Electronic energy + Delta-G solvation = -27929.406781 eV Core-core repulsion = 23973.523800 eV Total energy + Delta-G solvation = -3955.882980 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -40.23138 -39.29102 -37.60703 -36.81841 -36.05519 -34.42880 -32.65636 -31.26031 -30.90783 -29.76793 -28.46348 -27.50899 -26.45102 -23.60601 -23.01987 -22.28152 -21.21978 -20.46640 -19.80867 -18.28904 -17.49333 -16.90311 -16.49400 -16.08166 -15.84537 -15.44922 -15.08467 -14.45027 -14.23013 -14.18922 -13.75265 -13.55083 -13.49450 -13.31458 -13.21428 -12.91141 -12.59378 -12.25926 -12.17118 -12.08416 -11.82722 -11.70635 -11.60803 -11.26639 -11.17098 -10.83820 -10.71046 -10.59585 -10.54405 -10.49021 -10.20987 -10.04817 -9.37018 -9.27383 -9.08116 -9.06898 -8.57882 -8.04175 -7.12551 -6.21658 -3.21116 1.26620 1.29160 2.18957 2.84642 3.08631 3.47406 3.50032 3.65647 3.67614 3.98321 4.57624 4.76624 4.85656 4.91989 5.08549 5.14650 5.25086 5.31757 5.32941 5.40727 5.46475 5.52641 5.55323 5.71990 5.76924 5.82274 5.86138 5.92937 5.99706 6.04124 6.09644 6.22806 6.27111 6.27703 6.33327 6.38080 6.43461 6.60519 6.72067 6.89306 6.95963 7.41990 7.72258 7.91109 8.60974 8.64550 9.07624 9.92748 10.08887 11.24598 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.003471 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.633787 B = 8064.823617 C = 9787.658695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.134 4.134 5 C 0.153 3.847 6 H 0.085 0.915 7 C -0.163 4.163 8 N -0.696 5.696 9 C 0.532 3.468 10 O -0.538 6.538 11 C 0.033 3.967 12 O -0.287 6.287 13 C 0.143 3.857 14 C -0.189 4.189 15 C -0.066 4.066 16 C -0.079 4.079 17 Cl -0.082 7.082 18 C -0.074 4.074 19 C -0.142 4.142 20 N -0.728 5.728 21 C -0.313 4.313 22 H 0.063 0.937 23 C -0.043 4.043 24 N -0.945 5.945 25 Si 1.067 2.933 26 H -0.284 1.284 27 H -0.296 1.296 28 H -0.296 1.296 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.400 0.600 38 H 0.122 0.878 39 H 0.084 0.916 40 H 0.146 0.854 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.360 0.640 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.368 -3.938 -4.828 9.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.173 4.173 5 C 0.048 3.952 6 H 0.103 0.897 7 C -0.221 4.221 8 N -0.350 5.350 9 C 0.317 3.683 10 O -0.415 6.415 11 C -0.045 4.045 12 O -0.199 6.199 13 C 0.097 3.903 14 C -0.208 4.208 15 C -0.084 4.084 16 C -0.105 4.105 17 Cl -0.053 7.053 18 C -0.093 4.093 19 C -0.161 4.161 20 N -0.373 5.373 21 C -0.444 4.444 22 H 0.081 0.919 23 C -0.239 4.239 24 N -0.593 5.593 25 Si 0.899 3.101 26 H -0.209 1.209 27 H -0.223 1.223 28 H -0.224 1.224 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.237 0.763 38 H 0.140 0.860 39 H 0.102 0.898 40 H 0.163 0.837 41 H 0.153 0.847 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.195 0.805 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.326 -3.073 -3.594 9.575 hybrid contribution -1.004 -0.650 -1.062 1.600 sum 7.321 -3.723 -4.656 9.441 Atomic orbital electron populations 1.22398 0.99120 1.00680 1.00117 1.20236 0.91722 0.95761 0.85850 0.93199 1.22231 0.93869 1.01603 0.99601 1.20829 0.92463 0.97340 0.84557 0.89684 1.22214 1.01895 1.00857 0.97170 1.45778 1.17352 1.37767 1.34093 1.19745 0.81701 0.83670 0.83200 1.90668 1.61683 1.30241 1.58913 1.22726 0.84249 0.97298 1.00247 1.86108 1.29785 1.57092 1.46903 1.19160 0.91722 0.91816 0.87640 1.21423 1.02006 0.98865 0.98522 1.20849 0.92182 0.99298 0.96121 1.20736 0.95095 0.99846 0.94852 1.98341 1.76096 1.83286 1.47566 1.20766 0.99944 0.94399 0.94155 1.20349 0.93243 1.02912 0.99627 1.42486 1.79115 1.09239 1.06411 1.20055 1.40384 0.95045 0.88940 0.91923 1.25537 0.99843 0.97461 1.01078 1.71004 1.52717 1.07910 1.27620 0.83380 0.76023 0.74659 0.76061 1.20927 1.22294 1.22362 0.94393 0.93717 0.92782 0.91777 0.90501 0.92747 0.91900 0.92292 0.76322 0.86003 0.89816 0.83670 0.84653 0.84547 0.84276 0.80540 0.94155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.49 37.16 0.35 -2.35 16 2 C 0.17 3.10 2.89 -67.93 -0.20 2.90 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C -0.13 -1.88 4.43 -26.73 -0.12 -2.00 16 5 C 0.15 2.31 2.58 -67.93 -0.17 2.14 16 6 H 0.09 1.50 7.58 -51.93 -0.39 1.10 16 7 C -0.16 -2.05 9.48 37.16 0.35 -1.70 16 8 N -0.70 -11.59 3.80 -53.81 -0.20 -11.80 16 9 C 0.53 10.16 7.87 -10.98 -0.09 10.08 16 10 O -0.54 -11.93 16.16 -14.35 -0.23 -12.16 16 11 C 0.03 0.58 5.22 36.01 0.19 0.77 16 12 O -0.29 -5.31 9.67 -39.40 -0.38 -5.69 16 13 C 0.14 2.33 6.69 -39.23 -0.26 2.07 16 14 C -0.19 -2.89 9.04 -39.44 -0.36 -3.25 16 15 C -0.07 -0.91 9.82 -39.57 -0.39 -1.30 16 16 C -0.08 -1.04 6.32 -39.49 -0.25 -1.29 16 17 Cl -0.08 -0.97 28.95 -51.86 -1.50 -2.47 16 18 C -0.07 -0.93 9.82 -39.57 -0.39 -1.32 16 19 C -0.14 -2.01 9.99 -39.44 -0.39 -2.40 16 20 N -0.73 -15.55 3.84 -53.43 -0.21 -15.75 16 21 C -0.31 -7.93 9.93 -15.06 -0.15 -8.08 16 22 H 0.06 1.65 7.83 -52.48 -0.41 1.24 16 23 C -0.04 -1.11 5.50 -17.43 -0.10 -1.21 16 24 N -0.95 -24.75 13.44 55.49 0.75 -24.01 16 25 Si 1.07 24.85 29.92 -169.99 -5.09 19.76 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.30 -6.72 7.11 56.52 0.40 -6.32 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.40 6.45 6.51 -40.82 -0.27 6.18 16 38 H 0.12 2.44 7.39 -51.93 -0.38 2.06 16 39 H 0.08 1.21 7.67 -51.93 -0.40 0.81 16 40 H 0.15 2.21 6.30 -52.48 -0.33 1.88 16 41 H 0.14 1.66 8.06 -52.49 -0.42 1.23 16 42 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 44 H 0.36 7.58 4.54 -40.82 -0.19 7.39 16 45 H 0.25 6.18 6.77 -40.82 -0.28 5.91 16 LS Contribution 388.15 15.07 5.85 5.85 Total: -1.00 -29.42 388.15 -9.49 -38.92 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -6.51 Total: 14.29 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -1.97 Total: -6.94 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.34 Total: -51.55 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.61 Total: -17.85 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.09 Total: 19.76 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.42 -9.49 -38.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136067415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.369 kcal (2) G-P(sol) polarization free energy of solvation -29.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds