Wall clock time and date at job start Wed Apr 1 2020 00:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21281 * 120.00363 * 0.02562 * 9 8 5 11 11 C 1.50707 * 119.99794 * 180.02562 * 9 8 5 12 12 O 1.42902 * 109.46899 * 179.97438 * 11 9 8 13 13 C 1.35921 * 116.99987 * 179.97438 * 12 11 9 14 14 C 1.38716 * 120.04101 * 359.72794 * 13 12 11 15 15 C 1.38150 * 119.95511 * 179.78456 * 14 13 12 16 16 C 1.38367 * 120.04205 * 0.46926 * 15 14 13 17 17 Cl 1.73597 * 119.95681 * 179.76385 * 16 15 14 18 18 C 1.38365 * 120.08393 * 359.78530 * 16 15 14 19 19 C 1.38141 * 120.04158 * 359.97438 * 18 16 15 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 30 30 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 35 35 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 36 36 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 37 37 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 38 38 H 1.08997 * 109.46881 * 299.99970 * 11 9 8 39 39 H 1.08997 * 109.47052 * 60.00335 * 11 9 8 40 40 H 1.08006 * 120.02435 * 0.02638 * 14 13 12 41 41 H 1.08002 * 119.97839 * 180.23309 * 15 14 13 42 42 H 1.08002 * 119.97635 * 179.97438 * 18 16 15 43 43 H 1.08003 * 120.01575 * 179.97438 * 19 18 16 44 44 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 45 45 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9859 -0.0850 -0.2527 11 6 5.9807 -1.7329 1.4368 12 8 7.2692 -1.1888 1.7297 13 6 7.9558 -1.7489 2.7604 14 6 7.3981 -2.7967 3.4783 15 6 8.0994 -3.3676 4.5227 16 6 9.3532 -2.8886 4.8590 17 17 10.2299 -3.6037 6.1757 18 6 9.9088 -1.8401 4.1474 19 6 9.2128 -1.2698 3.0993 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 3.2931 -0.6500 6.1700 27 1 3.7495 1.3891 4.9391 28 1 1.4684 0.8113 5.5254 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.7724 -2.2740 -2.6699 35 1 3.6264 -0.6885 -3.4657 36 1 5.1509 -1.1482 -2.6697 37 1 3.6648 -2.0583 0.2386 38 1 5.3354 -1.6299 2.3092 39 1 6.0816 -2.7879 1.1820 40 1 6.4179 -3.1685 3.2184 41 1 7.6671 -4.1859 5.0794 42 1 10.8874 -1.4672 4.4117 43 1 9.6467 -0.4511 2.5444 44 1 2.2490 -1.6318 1.1526 45 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136067415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:42 Heat of formation + Delta-G solvation = -60.332095 kcal Electronic energy + Delta-G solvation = -27930.059279 eV Core-core repulsion = 23973.523800 eV Total energy + Delta-G solvation = -3956.535479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.52647 -40.62953 -38.84439 -38.24029 -37.13126 -36.01140 -34.31012 -32.53791 -32.15424 -30.95421 -30.09590 -28.82059 -27.66221 -25.49533 -24.16214 -23.45456 -22.49527 -21.84619 -21.26705 -19.56491 -19.32676 -18.25026 -17.69340 -17.44303 -17.15460 -16.72581 -16.67763 -15.90538 -15.59771 -15.53982 -15.46584 -15.00237 -14.57924 -14.53416 -14.50074 -14.18324 -13.87680 -13.55378 -13.43996 -13.23570 -13.16081 -12.90114 -12.86510 -12.71595 -12.56043 -12.34468 -12.21418 -11.91298 -11.80546 -11.76006 -11.72896 -11.63704 -11.13879 -10.90344 -10.88604 -10.16431 -10.01455 -9.20389 -8.93857 -8.24009 -5.17208 0.14697 0.19256 1.14539 1.48519 1.57071 1.61977 1.65227 1.77833 2.55811 2.67116 2.70009 3.47145 3.52369 3.70604 3.79152 3.83247 3.89189 3.92970 4.08054 4.11185 4.27122 4.28684 4.32969 4.48304 4.48606 4.60007 4.76065 4.79399 4.83638 4.86021 4.94283 4.99632 5.03834 5.07267 5.18245 5.21846 5.30521 5.32679 5.49704 5.53651 5.61536 5.71304 6.17473 6.49970 6.64921 7.17531 7.23060 8.08132 8.21761 9.25714 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.003471 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.633787 B = 8064.823617 C = 9787.658695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.166 3.834 3 H 0.026 0.974 4 C -0.119 4.119 5 C 0.148 3.852 6 H 0.055 0.945 7 C -0.152 4.152 8 N -0.686 5.686 9 C 0.524 3.476 10 O -0.576 6.576 11 C 0.042 3.958 12 O -0.310 6.310 13 C 0.115 3.885 14 C -0.199 4.199 15 C -0.071 4.071 16 C -0.080 4.080 17 Cl -0.066 7.066 18 C -0.065 4.065 19 C -0.146 4.146 20 N -0.731 5.731 21 C -0.315 4.315 22 H 0.045 0.955 23 C -0.081 4.081 24 N -0.957 5.957 25 Si 1.098 2.902 26 H -0.290 1.290 27 H -0.298 1.298 28 H -0.287 1.287 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.026 0.974 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.039 0.961 37 H 0.404 0.596 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.139 0.861 41 H 0.149 0.851 42 H 0.167 0.833 43 H 0.150 0.850 44 H 0.362 0.638 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.378 -4.841 -5.539 10.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.058 3.942 3 H 0.044 0.956 4 C -0.158 4.158 5 C 0.044 3.956 6 H 0.074 0.926 7 C -0.210 4.210 8 N -0.339 5.339 9 C 0.310 3.690 10 O -0.456 6.456 11 C -0.036 4.036 12 O -0.223 6.223 13 C 0.070 3.930 14 C -0.218 4.218 15 C -0.089 4.089 16 C -0.107 4.107 17 Cl -0.037 7.037 18 C -0.084 4.084 19 C -0.165 4.165 20 N -0.376 5.376 21 C -0.447 4.447 22 H 0.063 0.937 23 C -0.275 4.275 24 N -0.606 5.606 25 Si 0.928 3.072 26 H -0.215 1.215 27 H -0.225 1.225 28 H -0.213 1.213 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.099 0.901 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.241 0.759 38 H 0.115 0.885 39 H 0.130 0.870 40 H 0.157 0.843 41 H 0.167 0.833 42 H 0.184 0.816 43 H 0.168 0.832 44 H 0.197 0.803 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.296 -3.988 -4.329 10.171 hybrid contribution -0.982 -0.355 -0.815 1.324 sum 7.314 -4.343 -5.144 9.940 Atomic orbital electron populations 1.22256 0.97600 1.01043 1.00414 1.20440 0.92714 0.94796 0.86286 0.95575 1.22145 0.92612 1.02306 0.98705 1.20989 0.93395 0.95888 0.85355 0.92634 1.22114 1.00685 1.02094 0.96130 1.45825 1.16482 1.37441 1.34169 1.20080 0.82215 0.83319 0.83379 1.90635 1.62791 1.31893 1.60321 1.22594 0.83834 0.98643 0.98510 1.86068 1.29947 1.58153 1.48090 1.19481 0.92657 0.92893 0.87996 1.21428 1.02041 0.99088 0.99214 1.21029 0.92539 0.99608 0.95760 1.20892 0.94948 0.99757 0.95071 1.98349 1.75606 1.83032 1.46712 1.21075 1.00774 0.93578 0.92951 1.20599 0.92611 1.03192 1.00095 1.42502 1.79380 1.09254 1.06455 1.20112 1.39628 0.94498 0.90509 0.93656 1.26224 1.00458 0.97907 1.02932 1.71023 1.53548 1.08106 1.27911 0.82942 0.76205 0.73836 0.74248 1.21537 1.22535 1.21335 0.91100 0.93224 0.95498 0.90132 0.87060 0.90909 0.89388 0.94207 0.75909 0.88495 0.87011 0.84301 0.83282 0.81582 0.83234 0.80342 0.94044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.81 9.49 71.98 0.68 -4.13 16 2 C 0.17 5.77 2.89 44.99 0.13 5.90 16 3 H 0.03 1.03 8.08 -2.38 -0.02 1.01 16 4 C -0.12 -3.04 4.43 30.60 0.14 -2.91 16 5 C 0.15 4.33 2.58 44.99 0.12 4.45 16 6 H 0.06 1.98 7.58 -2.39 -0.02 1.96 16 7 C -0.15 -3.50 9.48 71.98 0.68 -2.82 16 8 N -0.69 -22.90 3.80 -442.53 -1.68 -24.58 16 9 C 0.52 20.63 7.87 87.66 0.69 21.32 16 10 O -0.58 -26.53 16.16 16.01 0.26 -26.27 16 11 C 0.04 1.55 5.22 71.24 0.37 1.92 16 12 O -0.31 -11.88 9.67 -73.62 -0.71 -12.59 16 13 C 0.12 3.82 6.69 22.50 0.15 3.97 16 14 C -0.20 -6.16 9.04 22.36 0.20 -5.95 16 15 C -0.07 -1.91 9.82 22.28 0.22 -1.69 16 16 C -0.08 -1.99 6.32 22.33 0.14 -1.85 16 17 Cl -0.07 -1.43 28.95 -2.72 -0.08 -1.51 16 18 C -0.07 -1.53 9.82 22.28 0.22 -1.31 16 19 C -0.15 -4.05 9.99 22.36 0.22 -3.83 16 20 N -0.73 -31.28 3.84 -322.94 -1.24 -32.52 16 21 C -0.32 -16.25 9.93 84.03 0.83 -15.42 16 22 H 0.05 2.45 7.83 -2.91 -0.02 2.43 16 23 C -0.08 -4.27 5.50 84.86 0.47 -3.81 16 24 N -0.96 -50.58 13.44 21.65 0.29 -50.29 16 25 Si 1.10 50.97 29.92 68.60 2.05 53.03 16 26 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 27 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 28 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.40 12.89 6.51 -92.71 -0.60 12.28 16 38 H 0.10 4.06 7.39 -2.39 -0.02 4.04 16 39 H 0.11 3.30 7.67 -2.39 -0.02 3.29 16 40 H 0.14 4.37 6.30 -2.91 -0.02 4.35 16 41 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 42 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 43 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 44 H 0.36 15.15 4.54 -92.71 -0.42 14.73 16 45 H 0.25 12.53 6.77 -92.71 -0.63 11.90 16 Total: -1.00 -65.02 388.15 4.28 -60.74 By element: Atomic # 1 Polarization: 40.02 SS G_CDS: 0.13 Total: 40.15 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 5.26 Total: -6.15 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -2.63 Total: -107.39 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -0.45 Total: -38.86 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.05 Total: 53.03 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal Total: -65.02 4.28 -60.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136067415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.409 kcal (2) G-P(sol) polarization free energy of solvation -65.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds