Wall clock time and date at job start Wed Apr 1 2020 00:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35676 * 116.99730 * 2 1 4 4 C 1.38702 * 120.13870 * 0.02562 * 3 2 1 5 5 C 1.38046 * 120.09784 * 179.97438 * 4 3 2 6 6 C 1.38644 * 120.38324 * 0.02562 * 5 4 3 7 7 Cl 1.73597 * 119.86741 * 180.02562 * 6 5 4 8 8 C 1.37901 * 120.26953 * 359.78797 * 6 5 4 9 9 C 1.39716 * 119.89151 * 0.44559 * 8 6 5 10 10 C 1.47537 * 120.18154 * 179.81329 * 9 8 6 11 11 O 1.21593 * 119.99856 * 179.72101 * 10 9 8 12 12 N 1.34777 * 120.00133 * 359.44654 * 10 9 8 13 13 C 1.46504 * 119.99854 * 180.27865 * 12 10 9 14 14 H 1.08993 * 109.47334 * 34.99803 * 13 12 10 15 15 C 1.52997 * 109.46930 * 274.99613 * 13 12 10 16 16 C 1.53001 * 109.47114 * 154.99905 * 13 12 10 17 17 C 1.53008 * 109.46978 * 294.99750 * 16 13 12 18 18 H 1.09000 * 109.47158 * 54.99961 * 17 16 13 19 19 C 1.52997 * 109.46844 * 175.00069 * 17 16 13 20 20 N 1.46503 * 109.46782 * 295.00051 * 17 16 13 21 21 C 1.36938 * 119.99596 * 154.99765 * 20 17 16 22 22 H 1.08004 * 120.00090 * 0.02562 * 21 20 17 23 23 C 1.38814 * 119.99575 * 179.97438 * 21 20 17 24 24 N 1.31611 * 120.00413 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99680 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47067 * 90.00111 * 25 23 21 27 27 H 1.48500 * 109.47268 * 210.00268 * 25 23 21 28 28 H 1.48505 * 109.47306 * 330.00473 * 25 23 21 29 29 H 1.08992 * 109.47872 * 300.00353 * 1 2 3 30 30 H 1.09007 * 109.47348 * 60.00875 * 1 2 3 31 31 H 1.09007 * 109.47500 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.94973 * 359.97438 * 4 3 2 33 33 H 1.08007 * 119.81073 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.05223 * 180.23268 * 8 6 5 35 35 H 0.97000 * 119.99736 * 0.27139 * 12 10 9 36 36 H 1.09000 * 109.47470 * 59.99994 * 15 13 12 37 37 H 1.08998 * 109.47338 * 180.02562 * 15 13 12 38 38 H 1.09001 * 109.46979 * 300.00198 * 15 13 12 39 39 H 1.09001 * 109.47245 * 54.98845 * 16 13 12 40 40 H 1.08994 * 109.47377 * 174.99736 * 16 13 12 41 41 H 1.09007 * 109.46360 * 179.97438 * 19 17 16 42 42 H 1.08998 * 109.47327 * 299.99517 * 19 17 16 43 43 H 1.08991 * 109.47135 * 60.00058 * 19 17 16 44 44 H 0.96991 * 119.99971 * 335.00292 * 20 17 16 45 45 H 0.96994 * 120.00059 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 6 1.2922 2.3740 0.0005 5 6 1.9197 3.6035 0.0011 6 6 3.3038 3.6844 0.0005 7 17 4.0790 5.2377 0.0019 8 6 4.0672 2.5360 0.0039 9 6 3.4440 1.2856 -0.0016 10 6 4.2545 0.0528 -0.0022 11 8 3.7086 -1.0337 -0.0019 12 7 5.6000 0.1310 -0.0088 13 6 6.4048 -1.0932 -0.0156 14 1 5.8981 -1.8579 -0.6041 15 6 6.5871 -1.5916 1.4194 16 6 7.7743 -0.7998 -0.6314 17 6 7.6009 -0.4212 -2.1038 18 1 6.9006 0.4101 -2.1851 19 6 8.9536 -0.0075 -2.6866 20 7 7.0807 -1.5723 -2.8458 21 6 6.3748 -1.3786 -4.0031 22 1 6.2018 -0.3772 -4.3689 23 6 5.8824 -2.4693 -4.7065 24 7 6.0936 -3.6896 -4.2610 25 14 4.9199 -2.2051 -6.2856 26 1 5.8546 -2.1977 -7.4396 27 1 3.9340 -3.3027 -6.4540 28 1 4.2061 -0.9045 -6.2185 29 1 -0.3634 0.5138 0.8898 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 0.2136 2.3190 0.0005 33 1 1.3291 4.5078 0.0019 34 1 5.1451 2.6031 0.0073 35 1 6.0354 0.9978 -0.0091 36 1 5.6115 -1.8006 1.8582 37 1 7.1863 -2.5021 1.4145 38 1 7.0939 -0.8268 2.0080 39 1 8.2437 0.0261 -0.0969 40 1 8.4041 -1.6861 -0.5559 41 1 8.8301 0.2617 -3.7357 42 1 9.3406 0.8489 -2.1345 43 1 9.6538 -0.8388 -2.6053 44 1 7.2363 -2.4716 -2.5174 45 1 5.7492 -4.4516 -4.7524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136082173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:09 Heat of formation + Delta-G solvation = -47.184415 kcal Electronic energy + Delta-G solvation = -27950.123143 eV Core-core repulsion = 23994.157790 eV Total energy + Delta-G solvation = -3955.965353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.68891 -39.03005 -37.82717 -36.70555 -36.28238 -34.36400 -32.38725 -31.74797 -30.16730 -30.09820 -28.52933 -27.39741 -26.26049 -24.34252 -23.52903 -22.44367 -21.27570 -20.26506 -19.65058 -18.60023 -17.43578 -17.01451 -16.69029 -15.93981 -15.59626 -15.53442 -14.94884 -14.74965 -14.41479 -14.01736 -13.84535 -13.67241 -13.59918 -13.31999 -12.91239 -12.75999 -12.62046 -12.20073 -12.11349 -12.02239 -11.89371 -11.67465 -11.54309 -11.49896 -11.17968 -10.97106 -10.85866 -10.78011 -10.54734 -10.35499 -10.16499 -9.83142 -9.55496 -9.46144 -9.38884 -8.81174 -8.62180 -8.31508 -6.85006 -5.66350 -2.93792 0.62416 0.96601 1.91934 2.89995 3.10060 3.43277 3.49521 3.54628 3.56303 3.79380 4.39374 4.43039 4.68209 4.74456 4.93625 4.98580 5.01998 5.16160 5.19740 5.37508 5.42670 5.48789 5.54264 5.57169 5.68467 5.76145 5.85896 5.86653 5.95914 6.01507 6.07908 6.19274 6.20932 6.35139 6.42934 6.50499 6.63589 6.79271 6.88517 7.00243 7.13355 7.17226 7.79070 7.87632 8.52118 8.64469 9.63532 10.21071 10.55363 11.56532 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008700 B = 0.003902 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.489183 B = 7173.862035 C = 7815.431261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.271 6.271 3 C 0.190 3.810 4 C -0.210 4.210 5 C -0.048 4.048 6 C -0.084 4.084 7 Cl -0.069 7.069 8 C -0.038 4.038 9 C -0.150 4.150 10 C 0.560 3.440 11 O -0.507 6.507 12 N -0.714 5.714 13 C 0.146 3.854 14 H 0.107 0.893 15 C -0.161 4.161 16 C -0.131 4.131 17 C 0.171 3.829 18 H 0.045 0.955 19 C -0.165 4.165 20 N -0.720 5.720 21 C -0.232 4.232 22 H 0.066 0.934 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.901 3.099 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.284 1.284 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.391 0.609 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.034 0.966 43 H 0.045 0.955 44 H 0.383 0.617 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.753 15.632 14.201 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.182 6.182 3 C 0.141 3.859 4 C -0.229 4.229 5 C -0.067 4.067 6 C -0.111 4.111 7 Cl -0.041 7.041 8 C -0.057 4.057 9 C -0.155 4.155 10 C 0.346 3.654 11 O -0.382 6.382 12 N -0.366 5.366 13 C 0.042 3.958 14 H 0.125 0.875 15 C -0.219 4.219 16 C -0.170 4.170 17 C 0.061 3.939 18 H 0.063 0.937 19 C -0.225 4.225 20 N -0.361 5.361 21 C -0.363 4.363 22 H 0.084 0.916 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.733 3.267 26 H -0.219 1.219 27 H -0.218 1.218 28 H -0.209 1.209 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.123 0.877 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.225 0.775 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.217 0.783 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.108 14.785 14.054 21.602 hybrid contribution -0.412 0.637 -0.960 1.224 sum -7.519 15.422 13.094 21.583 Atomic orbital electron populations 1.23215 0.78601 1.04690 1.01082 1.86459 1.20842 1.24859 1.85990 1.19135 0.91075 0.85145 0.90535 1.21184 1.00648 0.91225 1.09822 1.20938 0.92361 0.98098 0.95268 1.20568 0.92886 0.86694 1.10919 1.98368 1.81148 1.27264 1.97283 1.21054 1.00281 0.89393 0.94984 1.19453 0.91083 0.93945 1.10994 1.17703 0.82245 0.88096 0.77388 1.90857 1.71383 1.28185 1.47747 1.45868 1.05547 1.09690 1.75520 1.21028 0.91676 0.87291 0.95834 0.87536 1.22183 1.01866 1.00927 0.96918 1.22173 0.95505 1.01881 0.97401 1.20227 0.93105 0.91770 0.88799 0.93655 1.22456 0.99624 0.99275 1.01179 1.42384 1.64187 1.03205 1.26346 1.19152 1.25705 0.92419 0.99067 0.91567 1.24669 1.01590 0.95306 0.99169 1.69639 1.50949 0.97076 1.40332 0.86275 0.79659 0.76892 0.83900 1.21901 1.21843 1.20942 0.92604 0.92405 0.87697 0.83942 0.84374 0.83953 0.77512 0.92492 0.91743 0.93192 0.92087 0.90575 0.92944 0.94729 0.93547 0.78339 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.18 16 2 O -0.27 -4.13 8.57 -40.62 -0.35 -4.48 16 3 C 0.19 2.65 6.70 -38.70 -0.26 2.39 16 4 C -0.21 -2.15 9.03 -39.48 -0.36 -2.51 16 5 C -0.05 -0.45 9.81 -39.50 -0.39 -0.84 16 6 C -0.08 -0.89 6.31 -39.56 -0.25 -1.14 16 7 Cl -0.07 -0.67 28.94 -51.86 -1.50 -2.17 16 8 C -0.04 -0.44 9.31 -39.15 -0.36 -0.81 16 9 C -0.15 -2.22 5.89 -104.85 -0.62 -2.83 16 10 C 0.56 9.96 7.73 -12.47 -0.10 9.86 16 11 O -0.51 -11.18 14.82 -16.60 -0.25 -11.42 16 12 N -0.71 -10.98 4.40 -54.85 -0.24 -11.22 16 13 C 0.15 2.42 2.52 -67.93 -0.17 2.25 16 14 H 0.11 2.32 7.05 -51.93 -0.37 1.96 16 15 C -0.16 -2.27 9.48 37.16 0.35 -1.91 16 16 C -0.13 -2.03 4.29 -26.73 -0.11 -2.14 16 17 C 0.17 3.29 2.84 -67.93 -0.19 3.10 16 18 H 0.05 0.90 7.56 -51.93 -0.39 0.51 16 19 C -0.17 -2.92 9.49 37.16 0.35 -2.57 16 20 N -0.72 -17.90 4.49 -53.42 -0.24 -18.14 16 21 C -0.23 -6.55 9.93 -15.06 -0.15 -6.70 16 22 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -28.81 13.06 55.49 0.72 -28.08 16 25 Si 0.90 23.27 29.55 -169.99 -5.02 18.25 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 28 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 29 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 30 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 31 H 0.10 0.91 8.14 -51.92 -0.42 0.48 16 32 H 0.14 1.05 6.30 -52.49 -0.33 0.72 16 33 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 34 H 0.14 1.40 6.40 -52.49 -0.34 1.06 16 35 H 0.39 4.80 6.63 -40.82 -0.27 4.53 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.38 10.20 7.80 -40.82 -0.32 9.89 16 45 H 0.25 7.64 8.31 -40.82 -0.34 7.31 16 LS Contribution 388.33 15.07 5.85 5.85 Total: -1.00 -34.90 388.33 -8.97 -43.87 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -6.58 Total: 10.66 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -1.36 Total: -3.12 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.24 Total: -57.44 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.59 Total: -15.90 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.25 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.90 -8.97 -43.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136082173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.316 kcal (2) G-P(sol) polarization free energy of solvation -34.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds