Wall clock time and date at job start Wed Apr 1 2020 00:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35676 * 116.99730 * 2 1 4 4 C 1.38702 * 120.13870 * 0.02562 * 3 2 1 5 5 C 1.38046 * 120.09784 * 179.97438 * 4 3 2 6 6 C 1.38644 * 120.38324 * 0.02562 * 5 4 3 7 7 Cl 1.73597 * 119.86741 * 180.02562 * 6 5 4 8 8 C 1.37901 * 120.26953 * 359.78797 * 6 5 4 9 9 C 1.39716 * 119.89151 * 0.44559 * 8 6 5 10 10 C 1.47537 * 120.18154 * 179.81329 * 9 8 6 11 11 O 1.21593 * 119.99856 * 179.72101 * 10 9 8 12 12 N 1.34777 * 120.00133 * 359.44654 * 10 9 8 13 13 C 1.46504 * 119.99854 * 180.27865 * 12 10 9 14 14 H 1.08993 * 109.47334 * 34.99803 * 13 12 10 15 15 C 1.52997 * 109.46930 * 274.99613 * 13 12 10 16 16 C 1.53001 * 109.47114 * 154.99905 * 13 12 10 17 17 C 1.53008 * 109.46978 * 294.99750 * 16 13 12 18 18 H 1.09000 * 109.47158 * 54.99961 * 17 16 13 19 19 C 1.52997 * 109.46844 * 175.00069 * 17 16 13 20 20 N 1.46503 * 109.46782 * 295.00051 * 17 16 13 21 21 C 1.36938 * 119.99596 * 154.99765 * 20 17 16 22 22 H 1.08004 * 120.00090 * 0.02562 * 21 20 17 23 23 C 1.38814 * 119.99575 * 179.97438 * 21 20 17 24 24 N 1.31611 * 120.00413 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99680 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47067 * 90.00111 * 25 23 21 27 27 H 1.48500 * 109.47268 * 210.00268 * 25 23 21 28 28 H 1.48505 * 109.47306 * 330.00473 * 25 23 21 29 29 H 1.08992 * 109.47872 * 300.00353 * 1 2 3 30 30 H 1.09007 * 109.47348 * 60.00875 * 1 2 3 31 31 H 1.09007 * 109.47500 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.94973 * 359.97438 * 4 3 2 33 33 H 1.08007 * 119.81073 * 180.02562 * 5 4 3 34 34 H 1.08002 * 120.05223 * 180.23268 * 8 6 5 35 35 H 0.97000 * 119.99736 * 0.27139 * 12 10 9 36 36 H 1.09000 * 109.47470 * 59.99994 * 15 13 12 37 37 H 1.08998 * 109.47338 * 180.02562 * 15 13 12 38 38 H 1.09001 * 109.46979 * 300.00198 * 15 13 12 39 39 H 1.09001 * 109.47245 * 54.98845 * 16 13 12 40 40 H 1.08994 * 109.47377 * 174.99736 * 16 13 12 41 41 H 1.09007 * 109.46360 * 179.97438 * 19 17 16 42 42 H 1.08998 * 109.47327 * 299.99517 * 19 17 16 43 43 H 1.08991 * 109.47135 * 60.00058 * 19 17 16 44 44 H 0.96991 * 119.99971 * 335.00292 * 20 17 16 45 45 H 0.96994 * 120.00059 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 6 1.2922 2.3740 0.0005 5 6 1.9197 3.6035 0.0011 6 6 3.3038 3.6844 0.0005 7 17 4.0790 5.2377 0.0019 8 6 4.0672 2.5360 0.0039 9 6 3.4440 1.2856 -0.0016 10 6 4.2545 0.0528 -0.0022 11 8 3.7086 -1.0337 -0.0019 12 7 5.6000 0.1310 -0.0088 13 6 6.4048 -1.0932 -0.0156 14 1 5.8981 -1.8579 -0.6041 15 6 6.5871 -1.5916 1.4194 16 6 7.7743 -0.7998 -0.6314 17 6 7.6009 -0.4212 -2.1038 18 1 6.9006 0.4101 -2.1851 19 6 8.9536 -0.0075 -2.6866 20 7 7.0807 -1.5723 -2.8458 21 6 6.3748 -1.3786 -4.0031 22 1 6.2018 -0.3772 -4.3689 23 6 5.8824 -2.4693 -4.7065 24 7 6.0936 -3.6896 -4.2610 25 14 4.9199 -2.2051 -6.2856 26 1 5.8546 -2.1977 -7.4396 27 1 3.9340 -3.3027 -6.4540 28 1 4.2061 -0.9045 -6.2185 29 1 -0.3634 0.5138 0.8898 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 0.2136 2.3190 0.0005 33 1 1.3291 4.5078 0.0019 34 1 5.1451 2.6031 0.0073 35 1 6.0354 0.9978 -0.0091 36 1 5.6115 -1.8006 1.8582 37 1 7.1863 -2.5021 1.4145 38 1 7.0939 -0.8268 2.0080 39 1 8.2437 0.0261 -0.0969 40 1 8.4041 -1.6861 -0.5559 41 1 8.8301 0.2617 -3.7357 42 1 9.3406 0.8489 -2.1345 43 1 9.6538 -0.8388 -2.6053 44 1 7.2363 -2.4716 -2.5174 45 1 5.7492 -4.4516 -4.7524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136082173.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:09 Heat of formation + Delta-G solvation = -69.583574 kcal Electronic energy + Delta-G solvation = -27951.094444 eV Core-core repulsion = 23994.157790 eV Total energy + Delta-G solvation = -3956.936653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.70709 -40.25901 -38.72483 -38.21000 -37.13613 -36.01772 -34.06595 -33.09015 -31.35030 -31.02231 -30.37785 -28.19056 -27.58172 -25.70252 -25.30539 -23.35317 -22.46662 -21.62146 -21.15977 -19.64013 -19.20800 -18.32078 -17.71265 -16.93519 -16.86069 -16.61120 -16.43175 -15.88726 -15.76144 -15.62438 -15.37731 -14.84053 -14.70016 -14.48919 -14.34371 -14.12951 -13.60420 -13.55740 -13.34913 -13.15897 -13.02972 -12.91501 -12.81602 -12.78115 -12.66563 -12.32267 -12.22269 -12.20665 -11.97277 -11.80868 -11.67049 -11.54297 -11.40873 -10.91308 -10.80937 -10.31122 -9.93460 -9.22690 -8.93355 -7.91080 -5.16039 -0.30374 0.09708 1.10200 1.41236 1.43805 1.50848 1.83098 2.20918 2.29907 2.56435 2.68482 3.43305 3.54771 3.60902 3.83758 3.90067 4.01353 4.08786 4.15643 4.27548 4.30176 4.35612 4.42365 4.56193 4.59547 4.62946 4.70438 4.72278 4.80522 4.84762 4.95403 5.01542 5.03443 5.07013 5.11831 5.25781 5.36583 5.38420 5.44205 5.52507 5.64495 5.68862 6.30676 6.32230 6.65985 7.37694 7.37956 8.18472 8.38229 9.32837 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008700 B = 0.003902 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.489183 B = 7173.862035 C = 7815.431261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.315 6.315 3 C 0.169 3.831 4 C -0.201 4.201 5 C -0.035 4.035 6 C -0.088 4.088 7 Cl -0.057 7.057 8 C -0.034 4.034 9 C -0.184 4.184 10 C 0.552 3.448 11 O -0.565 6.565 12 N -0.702 5.702 13 C 0.148 3.852 14 H 0.046 0.954 15 C -0.150 4.150 16 C -0.118 4.118 17 C 0.163 3.837 18 H 0.041 0.959 19 C -0.155 4.155 20 N -0.731 5.731 21 C -0.225 4.225 22 H 0.068 0.932 23 C -0.077 4.077 24 N -0.968 5.968 25 Si 0.960 3.040 26 H -0.284 1.284 27 H -0.299 1.299 28 H -0.275 1.275 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.174 0.826 33 H 0.173 0.827 34 H 0.158 0.842 35 H 0.407 0.593 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.029 0.971 42 H 0.077 0.923 43 H 0.042 0.958 44 H 0.370 0.630 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.598 19.338 15.099 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.226 6.226 3 C 0.120 3.880 4 C -0.220 4.220 5 C -0.053 4.053 6 C -0.115 4.115 7 Cl -0.028 7.028 8 C -0.054 4.054 9 C -0.188 4.188 10 C 0.340 3.660 11 O -0.445 6.445 12 N -0.355 5.355 13 C 0.043 3.957 14 H 0.064 0.936 15 C -0.208 4.208 16 C -0.156 4.156 17 C 0.055 3.945 18 H 0.059 0.941 19 C -0.215 4.215 20 N -0.371 5.371 21 C -0.357 4.357 22 H 0.086 0.914 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.790 3.210 26 H -0.211 1.211 27 H -0.226 1.226 28 H -0.201 1.201 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.123 0.877 32 H 0.191 0.809 33 H 0.190 0.810 34 H 0.175 0.825 35 H 0.245 0.755 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.126 0.874 40 H 0.096 0.904 41 H 0.048 0.952 42 H 0.096 0.904 43 H 0.061 0.939 44 H 0.202 0.798 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.906 18.586 14.967 24.843 hybrid contribution -0.473 -0.371 -1.172 1.317 sum -7.379 18.215 13.795 24.012 Atomic orbital electron populations 1.23489 0.76342 1.05516 1.03070 1.86402 1.23512 1.26377 1.86353 1.19495 0.91235 0.85953 0.91284 1.21490 1.01981 0.90069 1.08410 1.21368 0.92177 0.98986 0.92787 1.20694 0.93509 0.86820 1.10470 1.98377 1.81066 1.26124 1.97207 1.21142 1.01136 0.88705 0.94381 1.19367 0.91575 0.93506 1.14365 1.18307 0.82901 0.88596 0.76216 1.90814 1.72484 1.30533 1.50660 1.45753 1.05045 1.10132 1.74581 1.20834 0.91700 0.86486 0.96637 0.93572 1.22074 1.01235 1.02226 0.95288 1.22085 0.94887 1.03682 0.94927 1.20528 0.93613 0.89708 0.90665 0.94126 1.22297 0.98215 1.00791 1.00201 1.42586 1.64200 1.04322 1.26000 1.19488 1.24404 0.92217 0.99587 0.91429 1.25410 1.03697 0.95298 1.02535 1.69794 1.52849 0.97637 1.41720 0.85330 0.78319 0.76648 0.80715 1.21082 1.22624 1.20063 0.89922 0.90903 0.87697 0.80884 0.80998 0.82495 0.75518 0.94582 0.91067 0.89880 0.87427 0.90393 0.95224 0.90408 0.93859 0.79835 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.32 -9.98 8.57 -69.01 -0.59 -10.57 16 3 C 0.17 4.70 6.70 22.84 0.15 4.85 16 4 C -0.20 -3.65 9.03 22.34 0.20 -3.45 16 5 C -0.03 -0.54 9.81 22.32 0.22 -0.32 16 6 C -0.09 -1.64 6.31 22.29 0.14 -1.50 16 7 Cl -0.06 -0.92 28.94 -2.72 -0.08 -1.00 16 8 C -0.03 -0.76 9.31 22.55 0.21 -0.55 16 9 C -0.18 -5.47 5.89 -20.01 -0.12 -5.59 16 10 C 0.55 20.55 7.73 86.70 0.67 21.22 16 11 O -0.57 -26.95 14.82 16.92 0.25 -26.70 16 12 N -0.70 -21.69 4.40 -445.70 -1.96 -23.65 16 13 C 0.15 4.99 2.52 44.99 0.11 5.10 16 14 H 0.05 2.15 7.05 -2.39 -0.02 2.14 16 15 C -0.15 -4.18 9.48 71.98 0.68 -3.49 16 16 C -0.12 -3.44 4.29 30.60 0.13 -3.30 16 17 C 0.16 6.12 2.84 44.99 0.13 6.25 16 18 H 0.04 1.57 7.56 -2.39 -0.02 1.55 16 19 C -0.16 -5.16 9.49 71.98 0.68 -4.48 16 20 N -0.73 -37.27 4.49 -322.92 -1.45 -38.72 16 21 C -0.22 -12.95 9.93 84.03 0.83 -12.12 16 22 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 23 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 24 N -0.97 -62.29 13.06 21.65 0.28 -62.01 16 25 Si 0.96 49.01 29.55 68.60 2.03 51.04 16 26 H -0.28 -13.99 7.11 99.48 0.71 -13.29 16 27 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 28 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 29 H 0.08 1.05 7.66 -2.39 -0.02 1.03 16 30 H 0.07 1.10 7.66 -2.38 -0.02 1.08 16 31 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.17 1.96 6.30 -2.91 -0.02 1.94 16 33 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 34 H 0.16 2.77 6.40 -2.91 -0.02 2.75 16 35 H 0.41 9.41 6.63 -92.71 -0.61 8.80 16 36 H 0.03 1.14 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 41 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.37 20.57 7.80 -92.71 -0.72 19.84 16 45 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -81.95 388.33 3.79 -78.16 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: -0.32 Total: 33.75 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 5.63 Total: -0.29 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -3.13 Total: -124.38 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -0.34 Total: -37.28 kcal Atomic # 14 Polarization: 49.01 SS G_CDS: 2.03 Total: 51.04 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -81.95 3.79 -78.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136082173.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.576 kcal (2) G-P(sol) polarization free energy of solvation -81.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds