Wall clock time and date at job start Tue Mar 31 2020 23:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33020 * 1 3 3 C 1.47064 * 119.99749 * 2 1 4 4 O 1.21631 * 120.00019 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99976 * 180.02562 * 3 2 1 6 6 C 1.39867 * 119.99985 * 185.27724 * 5 3 2 7 7 C 1.39015 * 119.99615 * 213.36525 * 6 5 3 8 8 C 1.38214 * 120.22039 * 180.02562 * 7 6 5 9 9 C 1.38023 * 120.22579 * 359.72221 * 8 7 6 10 10 C 1.39594 * 119.99584 * 0.55453 * 9 8 7 11 11 C 1.47836 * 120.10670 * 179.71489 * 10 9 8 12 12 O 1.21573 * 119.99997 * 179.72507 * 11 10 9 13 13 N 1.34781 * 120.00067 * 359.45503 * 11 10 9 14 14 C 1.40079 * 119.99829 * 180.27250 * 13 11 10 15 15 C 1.40429 * 125.97791 * 359.71439 * 14 13 11 16 16 C 1.35232 * 107.86947 * 179.82820 * 15 14 13 17 17 N 1.34978 * 107.86343 * 0.43005 * 16 15 14 18 18 C 1.46491 * 125.97366 * 179.70325 * 17 16 15 19 19 C 1.50706 * 109.47153 * 125.00226 * 18 17 16 20 20 H 1.08006 * 119.99504 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00325 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00080 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00017 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46661 * 90.00070 * 23 21 19 25 25 H 1.48499 * 109.47449 * 209.99984 * 23 21 19 26 26 H 1.48503 * 109.47223 * 330.00466 * 23 21 19 27 27 N 1.31233 * 125.97888 * 180.02562 * 14 13 11 28 28 C 1.38611 * 120.00477 * 33.38022 * 6 5 3 29 29 H 1.07997 * 119.99909 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.99928 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.99909 * 179.97438 * 2 1 3 32 32 H 0.97000 * 119.99921 * 5.26219 * 5 3 2 33 33 H 1.07999 * 119.89205 * 0.02562 * 7 6 5 34 34 H 1.07997 * 119.88129 * 180.02562 * 8 7 6 35 35 H 1.07999 * 120.00386 * 180.29224 * 9 8 7 36 36 H 0.96997 * 120.00000 * 0.27337 * 13 11 10 37 37 H 1.08003 * 126.06626 * 359.97438 * 15 14 13 38 38 H 1.07997 * 126.07103 * 180.13499 * 16 15 14 39 39 H 1.09002 * 109.47361 * 244.99698 * 18 17 16 40 40 H 1.09000 * 109.47262 * 5.00260 * 18 17 16 41 41 H 0.96999 * 120.00232 * 180.02562 * 22 21 19 42 42 H 1.08002 * 120.10989 * 0.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3302 0.0000 0.0000 3 6 2.0655 1.2736 0.0000 4 8 1.4573 2.3270 -0.0005 5 7 3.4132 1.2737 -0.0005 6 6 4.1126 2.4799 0.1109 7 6 5.3306 2.6397 -0.5398 8 6 6.0258 3.8294 -0.4324 9 6 5.5127 4.8688 0.3168 10 6 4.2932 4.7164 0.9788 11 6 3.7444 5.8259 1.7870 12 8 2.6797 5.6928 2.3587 13 7 4.4270 6.9831 1.8947 14 6 3.9097 8.0323 2.6652 15 6 2.6955 8.0170 3.3706 16 6 2.5590 9.2126 3.9877 17 7 3.6380 9.9629 3.6799 18 6 3.8918 11.3323 4.1343 19 6 5.2359 11.3953 4.8130 20 1 5.8403 10.5042 4.8978 21 6 5.6940 12.5904 5.3258 22 7 4.9577 13.6753 5.2230 23 14 7.3597 12.6683 6.1677 24 1 8.4075 12.9830 5.1636 25 1 7.3388 13.7263 7.2095 26 1 7.6569 11.3575 6.7992 27 7 4.4722 9.2035 2.8496 28 6 3.5914 3.5157 0.8702 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8702 -0.9353 0.0004 32 1 3.8982 0.4372 -0.0779 33 1 5.7350 1.8315 -1.1311 34 1 6.9714 3.9477 -0.9405 35 1 6.0567 5.7986 0.3944 36 1 5.2764 7.0893 1.4386 37 1 1.9960 7.1953 3.4145 38 1 1.7312 9.5152 4.6117 39 1 3.8855 12.0064 3.2777 40 1 3.1151 11.6315 4.8380 41 1 5.2801 14.5162 5.5834 42 1 2.6455 3.3933 1.3770 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136891839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:14 Heat of formation + Delta-G solvation = 71.932530 kcal Electronic energy + Delta-G solvation = -27173.066398 eV Core-core repulsion = 23121.158849 eV Total energy + Delta-G solvation = -4051.907548 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.07154 -40.57571 -39.52387 -38.21960 -35.22793 -34.74951 -33.47697 -33.32397 -31.62978 -30.80813 -29.91750 -29.26177 -26.73830 -24.78795 -24.62243 -22.86835 -22.27147 -21.44031 -20.38791 -20.11973 -19.53867 -18.22238 -17.90657 -16.77020 -16.57688 -16.40230 -16.23872 -15.63825 -15.29157 -15.14677 -14.98131 -14.48117 -14.42057 -14.24001 -13.96611 -13.78596 -13.74206 -12.99366 -12.77681 -12.40567 -12.37379 -12.26033 -12.09848 -11.86386 -11.75724 -11.02710 -10.88983 -10.82898 -10.41221 -10.36297 -10.27405 -10.24131 -10.01096 -9.59924 -9.47555 -9.26022 -8.61867 -8.53140 -8.09833 -7.43437 -6.22665 -4.27662 0.50629 0.80744 1.16734 2.46884 2.56934 2.79386 2.84221 2.99927 3.24973 3.30590 3.35980 3.52179 3.87890 3.90189 4.22479 4.33401 4.49301 4.55334 4.56441 4.80927 4.82246 5.06595 5.12354 5.12818 5.14195 5.51096 5.60077 5.68180 5.76638 5.83272 5.93543 5.94613 6.04972 6.08159 6.29531 6.53184 6.59273 6.67662 6.88753 6.93185 7.07668 7.42275 7.60355 7.69294 7.73000 7.90922 8.07210 8.26896 8.65502 8.82034 9.37824 10.86042 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.001997 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.800558 B =14020.169274 C =15005.852202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.219 4.219 3 C 0.539 3.461 4 O -0.514 6.514 5 N -0.670 5.670 6 C 0.136 3.864 7 C -0.122 4.122 8 C -0.105 4.105 9 C -0.101 4.101 10 C -0.106 4.106 11 C 0.563 3.437 12 O -0.508 6.508 13 N -0.625 5.625 14 C 0.257 3.743 15 C -0.286 4.286 16 C 0.052 3.948 17 N -0.318 5.318 18 C 0.258 3.742 19 C -0.528 4.528 20 H 0.069 0.931 21 C 0.062 3.938 22 N -0.895 5.895 23 Si 0.908 3.092 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.273 1.273 27 N -0.304 5.304 28 C -0.060 4.060 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.413 0.587 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.410 0.590 37 H 0.160 0.840 38 H 0.169 0.831 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.267 0.733 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.130 -29.154 -12.951 31.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.240 4.240 3 C 0.329 3.671 4 O -0.389 6.389 5 N -0.315 5.315 6 C 0.042 3.958 7 C -0.143 4.143 8 C -0.123 4.123 9 C -0.120 4.120 10 C -0.110 4.110 11 C 0.350 3.650 12 O -0.382 6.382 13 N -0.273 5.273 14 C 0.004 3.996 15 C -0.317 4.317 16 C -0.098 4.098 17 N -0.100 5.100 18 C 0.140 3.860 19 C -0.566 4.566 20 H 0.087 0.913 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.736 3.264 24 H -0.203 1.203 25 H -0.210 1.210 26 H -0.197 1.197 27 N -0.135 5.135 28 C -0.081 4.081 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.148 0.852 32 H 0.249 0.751 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.246 0.754 37 H 0.178 0.822 38 H 0.186 0.814 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.373 -27.471 -12.699 30.357 hybrid contribution 1.000 -0.697 0.353 1.269 sum -1.373 -28.168 -12.346 30.786 Atomic orbital electron populations 1.24860 0.95307 1.03784 0.88244 1.22642 0.96463 0.96359 1.08503 1.18922 0.81631 0.90539 0.75996 1.90900 1.67807 1.33014 1.47201 1.43379 1.06605 1.08257 1.73276 1.17551 0.93166 0.87335 0.97710 1.21073 0.94984 0.98834 0.99363 1.20887 1.00107 0.92339 0.98997 1.21391 0.94577 0.99537 0.96490 1.19669 0.96094 0.94536 1.00672 1.18105 0.84375 0.81465 0.81076 1.90731 1.21314 1.80847 1.45342 1.42298 1.24344 1.11744 1.48871 1.19051 0.94417 0.88976 0.97109 1.21544 1.00733 1.00455 1.09016 1.22562 0.93671 0.92256 1.01339 1.49080 1.13026 1.13733 1.34179 1.19753 0.98874 0.71658 0.95679 1.21261 1.02187 0.96002 1.37187 0.91295 1.24947 0.98168 0.95109 0.95891 1.69919 1.37658 0.99987 1.45786 0.86321 0.83175 0.77878 0.79075 1.20350 1.20996 1.19731 1.77323 1.17793 1.02364 1.15999 1.21219 1.00350 0.91024 0.95516 0.86455 0.86335 0.85243 0.75113 0.85185 0.84691 0.85077 0.75377 0.82237 0.81419 0.93683 0.92490 0.92341 0.83218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 14.31 28.92 0.41 -0.01 16 2 C -0.22 -1.20 10.03 -37.82 -0.38 -1.58 16 3 C 0.54 5.00 7.50 -12.68 -0.10 4.90 16 4 O -0.51 -7.17 13.91 5.25 0.07 -7.10 16 5 N -0.67 -4.81 5.33 -10.97 -0.06 -4.87 16 6 C 0.14 1.31 6.27 -83.77 -0.53 0.79 16 7 C -0.12 -0.89 9.95 -39.30 -0.39 -1.28 16 8 C -0.10 -0.79 10.02 -39.67 -0.40 -1.19 16 9 C -0.10 -0.98 9.54 -39.15 -0.37 -1.35 16 10 C -0.11 -1.38 5.87 -105.00 -0.62 -1.99 16 11 C 0.56 9.30 7.74 -12.33 -0.10 9.20 16 12 O -0.51 -9.95 13.47 5.30 0.07 -9.88 16 13 N -0.62 -10.46 5.40 -11.99 -0.06 -10.53 16 14 C 0.26 5.41 8.11 -154.45 -1.25 4.16 16 15 C -0.29 -5.97 9.60 -39.83 -0.38 -6.35 16 16 C 0.05 1.07 11.44 -17.24 -0.20 0.87 16 17 N -0.32 -7.58 3.67 -62.56 -0.23 -7.81 16 18 C 0.26 6.65 6.26 -5.20 -0.03 6.62 16 19 C -0.53 -14.84 9.24 -34.44 -0.32 -15.16 16 20 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.90 -25.51 13.29 55.43 0.74 -24.77 16 23 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 27 N -0.30 -7.17 12.42 31.43 0.39 -6.78 16 28 C -0.06 -0.78 8.20 -38.97 -0.32 -1.10 16 29 H 0.12 0.80 7.49 -52.49 -0.39 0.41 16 30 H 0.12 0.25 8.06 -52.49 -0.42 -0.17 16 31 H 0.13 0.28 8.06 -52.49 -0.42 -0.15 16 32 H 0.41 1.28 8.80 -40.82 -0.36 0.92 16 33 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 34 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.13 1.04 6.40 -52.49 -0.34 0.71 16 36 H 0.41 5.56 6.85 -40.82 -0.28 5.28 16 37 H 0.16 3.27 5.91 -52.48 -0.31 2.96 16 38 H 0.17 2.84 8.06 -52.49 -0.42 2.41 16 39 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.44 8.07 -51.93 -0.42 1.02 16 41 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.15 2.30 6.01 -52.49 -0.32 1.98 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -36.82 371.95 -8.05 -44.87 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -4.49 Total: 6.62 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -5.06 Total: -1.86 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.77 Total: -54.75 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.14 Total: -16.98 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.82 -8.05 -44.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136891839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.804 kcal (2) G-P(sol) polarization free energy of solvation -36.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds