Wall clock time and date at job start Tue Mar 31 2020 23:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33020 * 1 3 3 C 1.47064 * 119.99749 * 2 1 4 4 O 1.21631 * 120.00019 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99976 * 180.02562 * 3 2 1 6 6 C 1.39867 * 119.99985 * 185.27724 * 5 3 2 7 7 C 1.39015 * 119.99615 * 213.36525 * 6 5 3 8 8 C 1.38214 * 120.22039 * 180.02562 * 7 6 5 9 9 C 1.38023 * 120.22579 * 359.72221 * 8 7 6 10 10 C 1.39594 * 119.99584 * 0.55453 * 9 8 7 11 11 C 1.47836 * 120.10670 * 179.71489 * 10 9 8 12 12 O 1.21573 * 119.99997 * 179.72507 * 11 10 9 13 13 N 1.34781 * 120.00067 * 359.45503 * 11 10 9 14 14 C 1.40079 * 119.99829 * 180.27250 * 13 11 10 15 15 C 1.40429 * 125.97791 * 359.71439 * 14 13 11 16 16 C 1.35232 * 107.86947 * 179.82820 * 15 14 13 17 17 N 1.34978 * 107.86343 * 0.43005 * 16 15 14 18 18 C 1.46491 * 125.97366 * 179.70325 * 17 16 15 19 19 C 1.50706 * 109.47153 * 125.00226 * 18 17 16 20 20 H 1.08006 * 119.99504 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00325 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00080 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00017 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46661 * 90.00070 * 23 21 19 25 25 H 1.48499 * 109.47449 * 209.99984 * 23 21 19 26 26 H 1.48503 * 109.47223 * 330.00466 * 23 21 19 27 27 N 1.31233 * 125.97888 * 180.02562 * 14 13 11 28 28 C 1.38611 * 120.00477 * 33.38022 * 6 5 3 29 29 H 1.07997 * 119.99909 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.99928 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.99909 * 179.97438 * 2 1 3 32 32 H 0.97000 * 119.99921 * 5.26219 * 5 3 2 33 33 H 1.07999 * 119.89205 * 0.02562 * 7 6 5 34 34 H 1.07997 * 119.88129 * 180.02562 * 8 7 6 35 35 H 1.07999 * 120.00386 * 180.29224 * 9 8 7 36 36 H 0.96997 * 120.00000 * 0.27337 * 13 11 10 37 37 H 1.08003 * 126.06626 * 359.97438 * 15 14 13 38 38 H 1.07997 * 126.07103 * 180.13499 * 16 15 14 39 39 H 1.09002 * 109.47361 * 244.99698 * 18 17 16 40 40 H 1.09000 * 109.47262 * 5.00260 * 18 17 16 41 41 H 0.96999 * 120.00232 * 180.02562 * 22 21 19 42 42 H 1.08002 * 120.10989 * 0.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3302 0.0000 0.0000 3 6 2.0655 1.2736 0.0000 4 8 1.4573 2.3270 -0.0005 5 7 3.4132 1.2737 -0.0005 6 6 4.1126 2.4799 0.1109 7 6 5.3306 2.6397 -0.5398 8 6 6.0258 3.8294 -0.4324 9 6 5.5127 4.8688 0.3168 10 6 4.2932 4.7164 0.9788 11 6 3.7444 5.8259 1.7870 12 8 2.6797 5.6928 2.3587 13 7 4.4270 6.9831 1.8947 14 6 3.9097 8.0323 2.6652 15 6 2.6955 8.0170 3.3706 16 6 2.5590 9.2126 3.9877 17 7 3.6380 9.9629 3.6799 18 6 3.8918 11.3323 4.1343 19 6 5.2359 11.3953 4.8130 20 1 5.8403 10.5042 4.8978 21 6 5.6940 12.5904 5.3258 22 7 4.9577 13.6753 5.2230 23 14 7.3597 12.6683 6.1677 24 1 8.4075 12.9830 5.1636 25 1 7.3388 13.7263 7.2095 26 1 7.6569 11.3575 6.7992 27 7 4.4722 9.2035 2.8496 28 6 3.5914 3.5157 0.8702 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8702 -0.9353 0.0004 32 1 3.8982 0.4372 -0.0779 33 1 5.7350 1.8315 -1.1311 34 1 6.9714 3.9477 -0.9405 35 1 6.0567 5.7986 0.3944 36 1 5.2764 7.0893 1.4386 37 1 1.9960 7.1953 3.4145 38 1 1.7312 9.5152 4.6117 39 1 3.8855 12.0064 3.2777 40 1 3.1151 11.6315 4.8380 41 1 5.2801 14.5162 5.5834 42 1 2.6455 3.3933 1.3770 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136891839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:13 Heat of formation + Delta-G solvation = 46.477910 kcal Electronic energy + Delta-G solvation = -27174.170193 eV Core-core repulsion = 23121.158849 eV Total energy + Delta-G solvation = -4053.011343 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.34915 -41.68788 -40.75233 -39.17315 -36.38319 -35.95222 -35.29023 -33.94808 -33.02533 -32.07649 -31.05372 -30.65556 -28.63375 -25.95989 -25.36760 -24.63385 -23.00754 -22.74870 -21.91287 -20.97888 -20.77826 -19.27498 -18.70501 -18.50817 -18.20154 -17.32224 -17.26090 -17.03104 -16.60359 -16.30999 -16.17089 -15.77252 -15.58956 -15.35284 -15.17057 -14.80484 -14.49433 -14.31943 -14.27955 -13.88839 -13.85942 -13.63248 -12.98662 -12.92443 -12.83370 -12.73683 -12.62293 -12.30998 -12.11307 -11.71093 -11.59165 -11.43391 -11.06000 -11.03584 -10.78088 -10.72917 -10.07388 -9.81135 -9.26951 -9.15648 -8.33730 -6.47910 -0.33507 0.10707 0.57104 1.00828 1.27077 1.38149 1.38894 1.50186 1.52800 2.01278 2.12435 2.25798 2.29080 2.39060 2.83126 2.98084 3.41248 3.72310 3.87894 3.94413 4.05610 4.14502 4.20844 4.26402 4.37820 4.44339 4.69352 4.74530 4.83322 4.85520 4.89875 5.00161 5.05686 5.13723 5.22144 5.30790 5.32633 5.35804 5.47651 5.55758 5.78070 5.83663 5.87827 6.17656 6.25240 6.40840 6.63080 6.90049 7.01830 7.09838 7.21932 8.74143 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.001997 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.800558 B =14020.169274 C =15005.852202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.221 4.221 3 C 0.528 3.472 4 O -0.574 6.574 5 N -0.654 5.654 6 C 0.128 3.872 7 C -0.099 4.099 8 C -0.095 4.095 9 C -0.099 4.099 10 C -0.130 4.130 11 C 0.562 3.438 12 O -0.548 6.548 13 N -0.617 5.617 14 C 0.264 3.736 15 C -0.298 4.298 16 C 0.060 3.940 17 N -0.341 5.341 18 C 0.271 3.729 19 C -0.548 4.548 20 H 0.053 0.947 21 C 0.018 3.982 22 N -0.920 5.920 23 Si 0.974 3.026 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.273 1.273 27 N -0.339 5.339 28 C -0.085 4.085 29 H 0.089 0.911 30 H 0.155 0.845 31 H 0.173 0.827 32 H 0.435 0.565 33 H 0.175 0.825 34 H 0.176 0.824 35 H 0.147 0.853 36 H 0.424 0.576 37 H 0.162 0.838 38 H 0.204 0.796 39 H 0.023 0.977 40 H 0.060 0.940 41 H 0.273 0.727 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.256 -32.015 -14.169 35.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.241 4.241 3 C 0.320 3.680 4 O -0.454 6.454 5 N -0.300 5.300 6 C 0.033 3.967 7 C -0.119 4.119 8 C -0.113 4.113 9 C -0.118 4.118 10 C -0.134 4.134 11 C 0.352 3.648 12 O -0.425 6.425 13 N -0.266 5.266 14 C 0.010 3.990 15 C -0.329 4.329 16 C -0.089 4.089 17 N -0.123 5.123 18 C 0.153 3.847 19 C -0.586 4.586 20 H 0.071 0.929 21 C -0.182 4.182 22 N -0.559 5.559 23 Si 0.798 3.202 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.198 1.198 27 N -0.170 5.170 28 C -0.106 4.106 29 H 0.107 0.893 30 H 0.173 0.827 31 H 0.190 0.810 32 H 0.275 0.725 33 H 0.193 0.807 34 H 0.193 0.807 35 H 0.165 0.835 36 H 0.264 0.736 37 H 0.180 0.820 38 H 0.220 0.780 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.056 -30.388 -13.943 33.434 hybrid contribution 0.215 0.042 0.635 0.672 sum 0.270 -30.346 -13.307 33.137 Atomic orbital electron populations 1.25083 0.95501 1.04198 0.87259 1.22849 0.96503 0.95896 1.08886 1.19719 0.82278 0.91188 0.74796 1.90883 1.69024 1.35387 1.50071 1.43287 1.06114 1.08550 1.72079 1.17711 0.94179 0.87355 0.97424 1.21580 0.93032 0.99850 0.97465 1.21385 1.01137 0.91260 0.97536 1.21643 0.93125 1.01152 0.95909 1.19423 0.98086 0.93349 1.02522 1.18819 0.83730 0.81781 0.80517 1.90691 1.23144 1.81523 1.47139 1.42368 1.24990 1.10862 1.48403 1.19380 0.94185 0.89049 0.96422 1.21707 1.01023 1.00692 1.09446 1.23149 0.93468 0.91606 1.00675 1.48878 1.14258 1.13557 1.35590 1.19388 0.98178 0.72621 0.94542 1.21392 1.03201 0.95825 1.38223 0.92917 1.25758 1.01741 0.94548 0.96201 1.69996 1.39225 1.00492 1.46160 0.85319 0.78679 0.77981 0.78256 1.19667 1.19664 1.19776 1.77245 1.18964 1.03407 1.17407 1.21056 0.99618 0.92661 0.97300 0.89291 0.82698 0.81000 0.72475 0.80742 0.80661 0.83514 0.73642 0.82034 0.77964 0.95885 0.92243 0.91810 0.86911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 14.31 66.66 0.95 0.19 16 2 C -0.22 -2.07 10.03 23.42 0.23 -1.84 16 3 C 0.53 9.82 7.50 86.56 0.65 10.47 16 4 O -0.57 -17.38 13.91 -4.13 -0.06 -17.44 16 5 N -0.65 -8.34 5.33 -306.87 -1.64 -9.98 16 6 C 0.13 2.29 6.27 38.13 0.24 2.53 16 7 C -0.10 -1.04 9.95 22.45 0.22 -0.82 16 8 C -0.10 -1.04 10.02 22.21 0.22 -0.82 16 9 C -0.10 -1.75 9.54 22.55 0.22 -1.54 16 10 C -0.13 -3.47 5.87 -20.11 -0.12 -3.58 16 11 C 0.56 19.52 7.74 86.78 0.67 20.20 16 12 O -0.55 -23.05 13.47 -3.95 -0.05 -23.10 16 13 N -0.62 -21.25 5.40 -310.11 -1.67 -22.92 16 14 C 0.26 11.44 8.11 133.35 1.08 12.52 16 15 C -0.30 -12.81 9.60 22.11 0.21 -12.59 16 16 C 0.06 2.52 11.44 83.52 0.96 3.47 16 17 N -0.34 -16.70 3.67 -351.85 -1.29 -17.99 16 18 C 0.27 14.43 6.26 85.64 0.54 14.97 16 19 C -0.55 -31.46 9.24 25.60 0.24 -31.22 16 20 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 21 C 0.02 1.00 5.46 84.65 0.46 1.46 16 22 N -0.92 -52.68 13.29 21.45 0.28 -52.40 16 23 Si 0.97 44.04 29.54 68.60 2.03 46.06 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 27 N -0.34 -16.50 12.42 -54.48 -0.68 -17.18 16 28 C -0.08 -2.31 8.20 22.66 0.19 -2.12 16 29 H 0.09 1.35 7.49 -2.91 -0.02 1.33 16 30 H 0.16 0.25 8.06 -2.91 -0.02 0.23 16 31 H 0.17 0.07 8.06 -2.91 -0.02 0.05 16 32 H 0.43 1.28 8.80 -92.71 -0.82 0.46 16 33 H 0.18 0.33 8.06 -2.91 -0.02 0.31 16 34 H 0.18 0.61 8.06 -2.91 -0.02 0.58 16 35 H 0.15 2.04 6.40 -2.91 -0.02 2.02 16 36 H 0.42 11.59 6.85 -92.71 -0.64 10.95 16 37 H 0.16 6.92 5.91 -2.91 -0.02 6.90 16 38 H 0.20 6.76 8.06 -2.91 -0.02 6.74 16 39 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.06 3.08 8.07 -2.39 -0.02 3.06 16 41 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.11 3.89 6.01 -2.91 -0.02 3.87 16 Total: -1.00 -86.23 371.95 3.53 -82.70 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -0.35 Total: 20.96 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 6.96 Total: 11.28 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -4.99 Total: -120.46 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -0.11 Total: -40.54 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -86.23 3.53 -82.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136891839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.180 kcal (2) G-P(sol) polarization free energy of solvation -86.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds