Wall clock time and date at job start Wed Apr 1 2020 00:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21281 * 120.00363 * 0.02562 * 9 8 5 11 11 C 1.50707 * 119.99794 * 180.02562 * 9 8 5 12 12 O 1.42902 * 109.46899 * 179.97438 * 11 9 8 13 13 C 1.35899 * 117.00165 * 179.97438 * 12 11 9 14 14 C 1.38759 * 120.04587 * 359.72744 * 13 12 11 15 15 C 1.38134 * 119.97192 * 179.74133 * 14 13 12 16 16 C 1.38271 * 120.06180 * 0.55571 * 15 14 13 17 17 C 1.38362 * 120.10367 * 359.70083 * 16 15 14 18 18 Cl 1.73590 * 119.99051 * 180.02562 * 17 16 15 19 19 C 1.38285 * 120.02586 * 0.02562 * 17 16 15 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 30 30 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 35 35 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 36 36 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 37 37 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 38 38 H 1.08997 * 109.46881 * 299.99970 * 11 9 8 39 39 H 1.08997 * 109.47052 * 60.00335 * 11 9 8 40 40 H 1.08006 * 120.01772 * 0.02689 * 14 13 12 41 41 H 1.07994 * 119.97113 * 180.25660 * 15 14 13 42 42 H 1.07998 * 119.94695 * 179.71632 * 16 15 14 43 43 H 1.07995 * 120.03686 * 180.02562 * 19 17 16 44 44 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 45 45 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9859 -0.0850 -0.2527 11 6 5.9807 -1.7329 1.4368 12 8 7.2692 -1.1888 1.7297 13 6 7.9557 -1.7488 2.7602 14 6 7.3980 -2.7969 3.4784 15 6 8.0994 -3.3685 4.5222 16 6 9.3520 -2.8897 4.8593 17 6 9.9086 -1.8413 4.1485 18 17 11.4816 -1.2429 4.5739 19 6 9.2123 -1.2698 3.0993 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 3.2931 -0.6500 6.1700 27 1 3.7495 1.3891 4.9391 28 1 1.4684 0.8113 5.5254 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.6264 -0.6885 -3.4657 35 1 5.1509 -1.1482 -2.6697 36 1 3.7724 -2.2740 -2.6699 37 1 3.6648 -2.0583 0.2386 38 1 5.3354 -1.6299 2.3092 39 1 6.0816 -2.7879 1.1820 40 1 6.4178 -3.1687 3.2186 41 1 7.6670 -4.1870 5.0785 42 1 9.8968 -3.3350 5.6787 43 1 9.6468 -0.4517 2.5441 44 1 2.2490 -1.6318 1.1526 45 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146216557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:57 Heat of formation + Delta-G solvation = -44.680788 kcal Electronic energy + Delta-G solvation = -27954.304519 eV Core-core repulsion = 23998.447731 eV Total energy + Delta-G solvation = -3955.856787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.22716 -39.28714 -37.61014 -36.82339 -36.17860 -34.42729 -32.65533 -31.20097 -30.75840 -29.90007 -28.47707 -27.55591 -26.44894 -23.60586 -22.87851 -22.40880 -21.19800 -20.46375 -19.79959 -18.33777 -17.49512 -16.90230 -16.24693 -16.05052 -15.78220 -15.47175 -15.08908 -14.78455 -14.23785 -14.19499 -13.79632 -13.62552 -13.49986 -13.31918 -13.20992 -12.89177 -12.61190 -12.25380 -12.11322 -11.82539 -11.80878 -11.70305 -11.59172 -11.21613 -11.17527 -10.89221 -10.83742 -10.70400 -10.58812 -10.50165 -10.20818 -10.05046 -9.36403 -9.27415 -9.07243 -8.83027 -8.57491 -8.18002 -7.12535 -6.21901 -3.21140 1.17175 1.39005 2.00165 2.90029 3.09884 3.47217 3.50191 3.65233 3.68443 4.00744 4.57528 4.78364 4.90635 5.06643 5.09730 5.12640 5.21538 5.31482 5.32688 5.38486 5.45779 5.46820 5.53049 5.72242 5.77273 5.82575 5.84218 5.86458 5.99956 6.09849 6.16545 6.23223 6.27299 6.31963 6.38207 6.41761 6.43772 6.57915 6.72250 6.89584 6.96255 7.42582 7.72324 7.91552 8.60947 8.65131 9.07634 9.92747 10.08895 11.24479 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011653 B = 0.003518 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.281649 B = 7958.069964 C = 9613.989677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.134 4.134 5 C 0.153 3.847 6 H 0.085 0.915 7 C -0.163 4.163 8 N -0.696 5.696 9 C 0.531 3.469 10 O -0.538 6.538 11 C 0.034 3.966 12 O -0.287 6.287 13 C 0.150 3.850 14 C -0.196 4.196 15 C -0.065 4.065 16 C -0.155 4.155 17 C 0.001 3.999 18 Cl -0.072 7.072 19 C -0.148 4.148 20 N -0.728 5.728 21 C -0.313 4.313 22 H 0.063 0.937 23 C -0.043 4.043 24 N -0.946 5.946 25 Si 1.068 2.932 26 H -0.284 1.284 27 H -0.295 1.295 28 H -0.296 1.296 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.400 0.600 38 H 0.122 0.878 39 H 0.084 0.916 40 H 0.143 0.857 41 H 0.136 0.864 42 H 0.132 0.868 43 H 0.140 0.860 44 H 0.360 0.640 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.140 -4.459 -4.442 9.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.173 4.173 5 C 0.048 3.952 6 H 0.103 0.897 7 C -0.221 4.221 8 N -0.350 5.350 9 C 0.317 3.683 10 O -0.415 6.415 11 C -0.044 4.044 12 O -0.199 6.199 13 C 0.103 3.897 14 C -0.214 4.214 15 C -0.083 4.083 16 C -0.174 4.174 17 C -0.025 4.025 18 Cl -0.043 7.043 19 C -0.167 4.167 20 N -0.372 5.372 21 C -0.444 4.444 22 H 0.081 0.919 23 C -0.239 4.239 24 N -0.593 5.593 25 Si 0.899 3.101 26 H -0.209 1.209 27 H -0.223 1.223 28 H -0.224 1.224 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.237 0.763 38 H 0.140 0.860 39 H 0.102 0.898 40 H 0.161 0.839 41 H 0.153 0.847 42 H 0.150 0.850 43 H 0.158 0.842 44 H 0.195 0.805 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.165 -3.473 -3.288 9.462 hybrid contribution -0.916 -0.495 -1.164 1.562 sum 7.249 -3.968 -4.452 9.387 Atomic orbital electron populations 1.22398 0.99117 1.00678 1.00118 1.20237 0.91722 0.95767 0.85849 0.93195 1.22231 0.93871 1.01599 0.99600 1.20829 0.92457 0.97346 0.84558 0.89684 1.22214 1.01902 1.00850 0.97168 1.45773 1.17343 1.37772 1.34098 1.19746 0.81709 0.83681 0.83207 1.90671 1.61671 1.30222 1.58893 1.22722 0.84144 0.97289 1.00241 1.86092 1.29820 1.57126 1.46846 1.18826 0.91128 0.91853 0.87844 1.21581 1.02157 0.98738 0.98967 1.20912 0.93120 0.98722 0.95530 1.20906 0.96887 0.97867 1.01722 1.20475 0.87614 0.97200 0.97251 1.98357 1.25509 1.87730 1.92676 1.20147 0.93622 1.03470 0.99460 1.42485 1.79114 1.09238 1.06409 1.20058 1.40346 0.95052 0.88940 0.91919 1.25535 0.99840 0.97459 1.01080 1.71000 1.52763 1.07917 1.27623 0.83379 0.76027 0.74663 0.76041 1.20947 1.22284 1.22361 0.94391 0.93717 0.92782 0.91776 0.90501 0.91902 0.92290 0.92748 0.76327 0.85992 0.89803 0.83940 0.84665 0.85050 0.84208 0.80540 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.49 37.16 0.35 -2.35 16 2 C 0.17 3.10 2.89 -67.93 -0.20 2.91 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C -0.13 -1.89 4.43 -26.73 -0.12 -2.00 16 5 C 0.15 2.32 2.58 -67.93 -0.17 2.15 16 6 H 0.09 1.51 7.58 -51.93 -0.39 1.11 16 7 C -0.16 -2.06 9.48 37.16 0.35 -1.71 16 8 N -0.70 -11.63 3.80 -53.81 -0.20 -11.84 16 9 C 0.53 10.23 7.87 -10.98 -0.09 10.14 16 10 O -0.54 -12.03 16.16 -14.35 -0.23 -12.27 16 11 C 0.03 0.61 5.22 36.01 0.19 0.80 16 12 O -0.29 -5.40 9.67 -39.33 -0.38 -5.78 16 13 C 0.15 2.50 6.69 -39.22 -0.26 2.24 16 14 C -0.20 -2.96 9.04 -39.43 -0.36 -3.32 16 15 C -0.06 -0.84 10.04 -39.61 -0.40 -1.23 16 16 C -0.15 -1.93 9.83 -39.52 -0.39 -2.32 16 17 C 0.00 0.02 6.32 -39.52 -0.25 -0.23 16 18 Cl -0.07 -0.86 28.95 -51.86 -1.50 -2.36 16 19 C -0.15 -2.25 9.77 -39.40 -0.38 -2.63 16 20 N -0.73 -15.55 3.84 -53.43 -0.21 -15.76 16 21 C -0.31 -7.93 9.93 -15.06 -0.15 -8.08 16 22 H 0.06 1.65 7.83 -52.48 -0.41 1.24 16 23 C -0.04 -1.11 5.50 -17.43 -0.10 -1.21 16 24 N -0.95 -24.70 13.44 55.49 0.75 -23.96 16 25 Si 1.07 24.80 29.92 -169.99 -5.09 19.72 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.30 -6.71 7.11 56.52 0.40 -6.30 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.40 6.45 6.51 -40.82 -0.27 6.19 16 38 H 0.12 2.45 7.39 -51.93 -0.38 2.06 16 39 H 0.08 1.22 7.67 -51.93 -0.40 0.82 16 40 H 0.14 2.14 6.30 -52.48 -0.33 1.81 16 41 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 42 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.14 2.04 8.06 -52.49 -0.42 1.61 16 44 H 0.36 7.58 4.54 -40.82 -0.19 7.39 16 45 H 0.25 6.17 6.77 -40.82 -0.28 5.89 16 LS Contribution 388.15 15.07 5.85 5.85 Total: -1.00 -29.46 388.15 -9.49 -38.95 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -6.51 Total: 14.30 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.97 Total: -6.85 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.34 Total: -51.55 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.61 Total: -18.05 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.09 Total: 19.72 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.46 -9.49 -38.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146216557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.726 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds