Wall clock time and date at job start Wed Apr 1 2020 00:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21281 * 120.00363 * 0.02562 * 9 8 5 11 11 C 1.50707 * 119.99794 * 180.02562 * 9 8 5 12 12 O 1.42902 * 109.46899 * 179.97438 * 11 9 8 13 13 C 1.35899 * 117.00165 * 179.97438 * 12 11 9 14 14 C 1.38759 * 120.04587 * 359.72744 * 13 12 11 15 15 C 1.38134 * 119.97192 * 179.74133 * 14 13 12 16 16 C 1.38271 * 120.06180 * 0.55571 * 15 14 13 17 17 C 1.38362 * 120.10367 * 359.70083 * 16 15 14 18 18 Cl 1.73590 * 119.99051 * 180.02562 * 17 16 15 19 19 C 1.38285 * 120.02586 * 0.02562 * 17 16 15 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 30 30 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 35 35 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 36 36 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 37 37 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 38 38 H 1.08997 * 109.46881 * 299.99970 * 11 9 8 39 39 H 1.08997 * 109.47052 * 60.00335 * 11 9 8 40 40 H 1.08006 * 120.01772 * 0.02689 * 14 13 12 41 41 H 1.07994 * 119.97113 * 180.25660 * 15 14 13 42 42 H 1.07998 * 119.94695 * 179.71632 * 16 15 14 43 43 H 1.07995 * 120.03686 * 180.02562 * 19 17 16 44 44 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 45 45 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9859 -0.0850 -0.2527 11 6 5.9807 -1.7329 1.4368 12 8 7.2692 -1.1888 1.7297 13 6 7.9557 -1.7488 2.7602 14 6 7.3980 -2.7969 3.4784 15 6 8.0994 -3.3685 4.5222 16 6 9.3520 -2.8897 4.8593 17 6 9.9086 -1.8413 4.1485 18 17 11.4816 -1.2429 4.5739 19 6 9.2123 -1.2698 3.0993 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 3.2931 -0.6500 6.1700 27 1 3.7495 1.3891 4.9391 28 1 1.4684 0.8113 5.5254 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.6264 -0.6885 -3.4657 35 1 5.1509 -1.1482 -2.6697 36 1 3.7724 -2.2740 -2.6699 37 1 3.6648 -2.0583 0.2386 38 1 5.3354 -1.6299 2.3092 39 1 6.0816 -2.7879 1.1820 40 1 6.4178 -3.1687 3.2186 41 1 7.6670 -4.1870 5.0785 42 1 9.8968 -3.3350 5.6787 43 1 9.6468 -0.4517 2.5441 44 1 2.2490 -1.6318 1.1526 45 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146216557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:57 Heat of formation + Delta-G solvation = -59.879022 kcal Electronic energy + Delta-G solvation = -27954.963563 eV Core-core repulsion = 23998.447731 eV Total energy + Delta-G solvation = -3956.515832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.53441 -40.63498 -38.85200 -38.24904 -37.26735 -36.01510 -34.31154 -32.54553 -31.96644 -31.05807 -30.11786 -28.88249 -27.66403 -25.49264 -24.02781 -23.58607 -22.48012 -21.84992 -21.26561 -19.60855 -19.34019 -18.26534 -17.56964 -17.40035 -16.97737 -16.73847 -16.69294 -15.94914 -15.88730 -15.59833 -15.46715 -15.02831 -14.66581 -14.54990 -14.50647 -14.18550 -13.93513 -13.55333 -13.43647 -13.17313 -12.89911 -12.86102 -12.82999 -12.70738 -12.56017 -12.31369 -12.21369 -11.94998 -11.92130 -11.90110 -11.80362 -11.64035 -11.13610 -10.90388 -10.89220 -10.02191 -9.92586 -9.35486 -8.93627 -8.23959 -5.16888 0.06171 0.27340 0.93282 1.50427 1.57546 1.62653 1.68712 1.78182 2.57016 2.67939 2.70667 3.47379 3.53028 3.72058 3.80512 3.88671 3.91448 4.02192 4.08136 4.09897 4.20944 4.28041 4.29705 4.39208 4.48316 4.59695 4.74532 4.75872 4.79287 4.83416 4.99361 5.03835 5.07007 5.08936 5.22078 5.30123 5.32579 5.33210 5.48672 5.53630 5.61322 5.71437 6.17380 6.49708 6.65353 7.17403 7.23193 8.08216 8.22067 9.25854 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011653 B = 0.003518 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.281649 B = 7958.069964 C = 9613.989677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.119 4.119 5 C 0.147 3.853 6 H 0.055 0.945 7 C -0.152 4.152 8 N -0.686 5.686 9 C 0.523 3.477 10 O -0.577 6.577 11 C 0.044 3.956 12 O -0.313 6.313 13 C 0.122 3.878 14 C -0.206 4.206 15 C -0.061 4.061 16 C -0.145 4.145 17 C -0.003 4.003 18 Cl -0.057 7.057 19 C -0.160 4.160 20 N -0.731 5.731 21 C -0.316 4.316 22 H 0.045 0.955 23 C -0.081 4.081 24 N -0.957 5.957 25 Si 1.098 2.902 26 H -0.287 1.287 27 H -0.300 1.300 28 H -0.287 1.287 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.026 0.974 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.404 0.596 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.139 0.861 41 H 0.165 0.835 42 H 0.162 0.838 43 H 0.137 0.863 44 H 0.362 0.638 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.819 -5.979 -4.763 10.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.157 4.157 5 C 0.044 3.956 6 H 0.073 0.927 7 C -0.210 4.210 8 N -0.338 5.338 9 C 0.309 3.691 10 O -0.458 6.458 11 C -0.034 4.034 12 O -0.226 6.226 13 C 0.076 3.924 14 C -0.224 4.224 15 C -0.079 4.079 16 C -0.163 4.163 17 C -0.030 4.030 18 Cl -0.028 7.028 19 C -0.180 4.180 20 N -0.376 5.376 21 C -0.449 4.449 22 H 0.063 0.937 23 C -0.275 4.275 24 N -0.605 5.605 25 Si 0.928 3.072 26 H -0.213 1.213 27 H -0.228 1.228 28 H -0.214 1.214 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.099 0.901 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.241 0.759 38 H 0.116 0.884 39 H 0.132 0.868 40 H 0.157 0.843 41 H 0.182 0.818 42 H 0.180 0.820 43 H 0.154 0.846 44 H 0.197 0.803 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.804 -5.004 -3.634 9.958 hybrid contribution -0.783 0.008 -1.049 1.310 sum 7.021 -4.996 -4.683 9.808 Atomic orbital electron populations 1.22254 0.97568 1.01069 1.00404 1.20438 0.92737 0.94770 0.86303 0.95651 1.22145 0.92553 1.02346 0.98705 1.20990 0.93434 0.95859 0.85364 0.92717 1.22113 1.00646 1.02130 0.96128 1.45813 1.16430 1.37436 1.34154 1.20103 0.82239 0.83322 0.83406 1.90638 1.62828 1.31956 1.60353 1.22601 0.83623 0.98673 0.98512 1.86046 1.30108 1.58313 1.48112 1.19088 0.91810 0.93133 0.88324 1.21677 1.02311 0.98697 0.99754 1.21271 0.93069 0.98947 0.94632 1.21284 0.96608 0.96774 1.01649 1.20613 0.88185 0.97370 0.96794 1.98362 1.24342 1.87638 1.92436 1.20256 0.93578 1.03830 1.00306 1.42494 1.79389 1.09256 1.06437 1.20114 1.39713 0.94490 0.90544 0.93732 1.26224 1.00399 0.97921 1.02914 1.71016 1.53507 1.08060 1.27914 0.82938 0.76162 0.73819 0.74296 1.21291 1.22753 1.21350 0.91123 0.93172 0.95498 0.90056 0.87076 0.89397 0.94276 0.90837 0.75854 0.88360 0.86842 0.84345 0.81777 0.82023 0.84557 0.80315 0.94030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.81 9.49 71.98 0.68 -4.13 16 2 C 0.17 5.79 2.89 44.99 0.13 5.92 16 3 H 0.03 1.01 8.08 -2.38 -0.02 0.99 16 4 C -0.12 -3.05 4.43 30.60 0.14 -2.91 16 5 C 0.15 4.37 2.58 44.99 0.12 4.48 16 6 H 0.05 1.97 7.58 -2.39 -0.02 1.96 16 7 C -0.15 -3.54 9.48 71.98 0.68 -2.86 16 8 N -0.69 -22.99 3.80 -442.53 -1.68 -24.67 16 9 C 0.52 20.83 7.87 87.66 0.69 21.52 16 10 O -0.58 -27.05 16.16 16.01 0.26 -26.79 16 11 C 0.04 1.62 5.22 71.24 0.37 1.99 16 12 O -0.31 -12.36 9.67 -73.38 -0.71 -13.07 16 13 C 0.12 4.18 6.69 22.50 0.15 4.33 16 14 C -0.21 -6.20 9.04 22.37 0.20 -5.99 16 15 C -0.06 -1.47 10.04 22.25 0.22 -1.25 16 16 C -0.14 -3.27 9.83 22.31 0.22 -3.05 16 17 C 0.00 -0.07 6.32 22.31 0.14 0.07 16 18 Cl -0.06 -1.29 28.95 -2.72 -0.08 -1.37 16 19 C -0.16 -4.96 9.77 22.39 0.22 -4.74 16 20 N -0.73 -31.27 3.84 -322.94 -1.24 -32.51 16 21 C -0.32 -16.32 9.93 84.03 0.83 -15.48 16 22 H 0.04 2.42 7.83 -2.91 -0.02 2.40 16 23 C -0.08 -4.22 5.50 84.86 0.47 -3.76 16 24 N -0.96 -50.13 13.44 21.65 0.29 -49.84 16 25 Si 1.10 50.76 29.92 68.60 2.05 52.82 16 26 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 27 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 28 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.40 12.88 6.51 -92.71 -0.60 12.27 16 38 H 0.10 4.11 7.39 -2.39 -0.02 4.09 16 39 H 0.11 3.35 7.67 -2.39 -0.02 3.33 16 40 H 0.14 4.20 6.30 -2.91 -0.02 4.18 16 41 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 42 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 43 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 44 H 0.36 15.11 4.54 -92.71 -0.42 14.69 16 45 H 0.25 12.43 6.77 -92.71 -0.63 11.81 16 Total: -1.00 -65.76 388.15 4.28 -61.47 By element: Atomic # 1 Polarization: 39.69 SS G_CDS: 0.13 Total: 39.82 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 5.27 Total: -5.86 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -2.63 Total: -107.02 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.45 Total: -39.86 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 2.05 Total: 52.82 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -65.76 4.28 -61.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146216557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.595 kcal (2) G-P(sol) polarization free energy of solvation -65.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds