Wall clock time and date at job start Wed Apr 1 2020 00:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21281 * 120.00363 * 0.02562 * 9 8 5 11 11 C 1.50707 * 119.99794 * 180.02562 * 9 8 5 12 12 O 1.42902 * 109.46899 * 179.97438 * 11 9 8 13 13 C 1.35921 * 116.99987 * 179.97438 * 12 11 9 14 14 C 1.38712 * 120.06036 * 0.02562 * 13 12 11 15 15 C 1.38151 * 119.95785 * 180.02562 * 14 13 12 16 16 C 1.38277 * 120.07808 * 359.97438 * 15 14 13 17 17 C 1.38248 * 120.11828 * 0.02562 * 16 15 14 18 18 C 1.38261 * 120.04420 * 359.67553 * 17 16 15 19 19 Cl 1.73594 * 120.04175 * 180.31663 * 18 17 16 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 30 30 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 31 31 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 35 35 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 36 36 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 37 37 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 38 38 H 1.08997 * 109.46881 * 299.99970 * 11 9 8 39 39 H 1.08997 * 109.47052 * 60.00335 * 11 9 8 40 40 H 1.07994 * 120.01805 * 359.97438 * 14 13 12 41 41 H 1.07995 * 119.95877 * 179.97438 * 15 14 13 42 42 H 1.07998 * 119.94306 * 180.02562 * 16 15 14 43 43 H 1.07997 * 119.97770 * 179.97438 * 17 16 15 44 44 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 45 45 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9859 -0.0850 -0.2527 11 6 5.9807 -1.7329 1.4368 12 8 7.2692 -1.1888 1.7297 13 6 7.9558 -1.7489 2.7604 14 6 7.4011 -2.8007 3.4746 15 6 8.1006 -3.3681 4.5221 16 6 9.3532 -2.8891 4.8591 17 6 9.9091 -1.8409 4.1495 18 6 9.2160 -1.2734 3.0962 19 17 9.9176 0.0373 2.2000 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 4.1540 0.8503 5.2062 27 1 1.7835 1.3605 5.1727 28 1 2.5735 -0.6603 6.2554 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 5.1509 -1.1482 -2.6697 35 1 3.7724 -2.2740 -2.6699 36 1 3.6264 -0.6885 -3.4657 37 1 3.6648 -2.0583 0.2386 38 1 5.3354 -1.6299 2.3092 39 1 6.0816 -2.7879 1.1820 40 1 6.4227 -3.1753 3.2124 41 1 7.6686 -4.1868 5.0784 42 1 9.8983 -3.3346 5.6781 43 1 10.8874 -1.4683 4.4149 44 1 2.2490 -1.6318 1.1526 45 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146275499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:09 Heat of formation + Delta-G solvation = -42.476468 kcal Electronic energy + Delta-G solvation = -28245.533035 eV Core-core repulsion = 24289.771834 eV Total energy + Delta-G solvation = -3955.761201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.19589 -39.25096 -37.44461 -36.66511 -36.15584 -34.40174 -32.62956 -31.05226 -30.70472 -29.97340 -28.45006 -27.50238 -26.43004 -23.59049 -22.88064 -22.31175 -21.19995 -20.43929 -19.76737 -18.30100 -17.47371 -16.84242 -16.31675 -16.05278 -15.79705 -15.43253 -15.06606 -14.49090 -14.23806 -14.15809 -13.80109 -13.69953 -13.50607 -13.23278 -13.18132 -12.69838 -12.46984 -12.21941 -12.07046 -11.82435 -11.80097 -11.68337 -11.34926 -11.18458 -11.10997 -10.84149 -10.78661 -10.61147 -10.55091 -10.48023 -10.18945 -10.07521 -9.31934 -9.26132 -9.05067 -8.81350 -8.54115 -8.06579 -7.10447 -6.20271 -3.19347 1.22028 1.40813 2.35175 2.86711 3.13207 3.48970 3.51935 3.63992 3.71017 3.98775 4.58783 4.83461 4.87916 4.97533 5.15180 5.16231 5.27604 5.30914 5.35141 5.36180 5.48499 5.54052 5.55384 5.74157 5.79485 5.80859 5.84824 5.88441 6.01730 6.11526 6.16657 6.25525 6.27131 6.29201 6.39977 6.45768 6.48321 6.69142 6.73937 6.91776 6.98743 7.39833 7.74549 7.95040 8.62731 8.69516 9.09479 9.94553 10.10698 11.26205 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010410 B = 0.004267 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.058431 B = 6559.964327 C = 8219.132166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.134 4.134 5 C 0.153 3.847 6 H 0.085 0.915 7 C -0.163 4.163 8 N -0.697 5.697 9 C 0.532 3.468 10 O -0.535 6.535 11 C 0.033 3.967 12 O -0.278 6.278 13 C 0.146 3.854 14 C -0.191 4.191 15 C -0.073 4.073 16 C -0.154 4.154 17 C -0.078 4.078 18 C -0.072 4.072 19 Cl -0.060 7.060 20 N -0.728 5.728 21 C -0.312 4.312 22 H 0.063 0.937 23 C -0.044 4.044 24 N -0.946 5.946 25 Si 1.070 2.930 26 H -0.295 1.295 27 H -0.296 1.296 28 H -0.288 1.288 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.400 0.600 38 H 0.122 0.878 39 H 0.083 0.917 40 H 0.145 0.855 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.360 0.640 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.445 -4.507 -4.170 9.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.065 3.935 3 H 0.068 0.932 4 C -0.173 4.173 5 C 0.048 3.952 6 H 0.103 0.897 7 C -0.221 4.221 8 N -0.351 5.351 9 C 0.317 3.683 10 O -0.411 6.411 11 C -0.045 4.045 12 O -0.190 6.190 13 C 0.098 3.902 14 C -0.210 4.210 15 C -0.091 4.091 16 C -0.172 4.172 17 C -0.097 4.097 18 C -0.099 4.099 19 Cl -0.031 7.031 20 N -0.373 5.373 21 C -0.443 4.443 22 H 0.081 0.919 23 C -0.240 4.240 24 N -0.594 5.594 25 Si 0.902 3.098 26 H -0.223 1.223 27 H -0.223 1.223 28 H -0.214 1.214 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.236 0.764 38 H 0.140 0.860 39 H 0.101 0.899 40 H 0.162 0.838 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.195 0.805 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.378 -3.446 -3.144 9.589 hybrid contribution -0.985 -0.468 -1.255 1.663 sum 7.393 -3.914 -4.400 9.452 Atomic orbital electron populations 1.22397 0.99136 1.00662 1.00106 1.20233 0.91701 0.95761 0.85851 0.93209 1.22229 0.93900 1.01576 0.99582 1.20822 0.92426 0.97352 0.84570 0.89696 1.22213 1.01914 1.00820 0.97171 1.45768 1.17368 1.37802 1.34125 1.19722 0.81696 0.83714 0.83211 1.90680 1.61591 1.30088 1.58763 1.22729 0.84226 0.97269 1.00289 1.86176 1.29665 1.56724 1.46413 1.18783 0.90471 0.92293 0.88605 1.21444 1.02193 0.98304 0.99025 1.21063 0.93955 0.98743 0.95331 1.20974 0.96557 0.98267 1.01444 1.20846 0.99705 0.95867 0.93261 1.20180 0.93617 0.96771 0.99350 1.98362 1.83362 1.46910 1.74489 1.42491 1.79103 1.09242 1.06422 1.20083 1.40275 0.95035 0.88895 0.91899 1.25532 0.99888 0.97475 1.01088 1.70963 1.52836 1.07913 1.27650 0.83328 0.76094 0.74409 0.75960 1.22273 1.22270 1.21391 0.92791 0.94403 0.93725 0.91794 0.90528 0.92284 0.92772 0.91933 0.76376 0.86031 0.89877 0.83773 0.85103 0.85243 0.84669 0.80539 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.49 37.16 0.35 -2.38 16 2 C 0.17 3.15 2.89 -67.93 -0.20 2.95 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 C -0.13 -1.92 4.43 -26.73 -0.12 -2.04 16 5 C 0.15 2.37 2.58 -67.93 -0.17 2.20 16 6 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 7 C -0.16 -2.11 9.48 37.16 0.35 -1.76 16 8 N -0.70 -11.88 3.80 -53.81 -0.20 -12.08 16 9 C 0.53 10.47 7.87 -10.98 -0.09 10.38 16 10 O -0.53 -12.24 16.16 -14.35 -0.23 -12.47 16 11 C 0.03 0.61 5.22 36.01 0.19 0.79 16 12 O -0.28 -5.45 9.13 -39.40 -0.36 -5.81 16 13 C 0.15 2.53 6.68 -39.19 -0.26 2.27 16 14 C -0.19 -2.95 9.04 -39.44 -0.36 -3.31 16 15 C -0.07 -0.94 10.04 -39.60 -0.40 -1.33 16 16 C -0.15 -1.80 10.04 -39.56 -0.40 -2.20 16 17 C -0.08 -1.00 9.83 -39.57 -0.39 -1.39 16 18 C -0.07 -1.14 6.33 -39.36 -0.25 -1.39 16 19 Cl -0.06 -0.96 28.50 -51.86 -1.48 -2.44 16 20 N -0.73 -15.73 3.84 -53.43 -0.21 -15.93 16 21 C -0.31 -7.97 9.93 -15.06 -0.15 -8.11 16 22 H 0.06 1.68 7.83 -52.48 -0.41 1.27 16 23 C -0.04 -1.14 5.50 -17.43 -0.10 -1.24 16 24 N -0.95 -24.89 13.44 55.49 0.75 -24.14 16 25 Si 1.07 25.09 29.92 -169.99 -5.09 20.00 16 26 H -0.30 -6.99 7.11 56.52 0.40 -6.58 16 27 H -0.30 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.40 6.57 6.51 -40.82 -0.27 6.31 16 38 H 0.12 2.50 7.40 -51.93 -0.38 2.12 16 39 H 0.08 1.25 7.66 -51.93 -0.40 0.85 16 40 H 0.14 2.21 6.30 -52.49 -0.33 1.88 16 41 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 43 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 44 H 0.36 7.66 4.54 -40.82 -0.19 7.48 16 45 H 0.25 6.23 6.77 -40.82 -0.28 5.95 16 LS Contribution 387.44 15.07 5.84 5.84 Total: -1.00 -30.40 387.44 -9.47 -39.87 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -6.51 Total: 13.72 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -1.98 Total: -6.55 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.34 Total: -52.16 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.59 Total: -18.28 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.09 Total: 20.00 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.48 Total: -2.44 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.40 -9.47 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146275499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.607 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds