Wall clock time and date at job start Wed Apr 1 2020 00:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21281 * 120.00363 * 0.02562 * 9 8 5 11 11 C 1.50707 * 119.99794 * 180.02562 * 9 8 5 12 12 O 1.42902 * 109.46899 * 179.97438 * 11 9 8 13 13 C 1.35921 * 116.99987 * 179.97438 * 12 11 9 14 14 C 1.38712 * 120.06036 * 0.02562 * 13 12 11 15 15 C 1.38151 * 119.95785 * 180.02562 * 14 13 12 16 16 C 1.38277 * 120.07808 * 359.97438 * 15 14 13 17 17 C 1.38248 * 120.11828 * 0.02562 * 16 15 14 18 18 C 1.38261 * 120.04420 * 359.67553 * 17 16 15 19 19 Cl 1.73594 * 120.04175 * 180.31663 * 18 17 16 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 30 30 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 31 31 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 35 35 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 36 36 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 37 37 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 38 38 H 1.08997 * 109.46881 * 299.99970 * 11 9 8 39 39 H 1.08997 * 109.47052 * 60.00335 * 11 9 8 40 40 H 1.07994 * 120.01805 * 359.97438 * 14 13 12 41 41 H 1.07995 * 119.95877 * 179.97438 * 15 14 13 42 42 H 1.07998 * 119.94306 * 180.02562 * 16 15 14 43 43 H 1.07997 * 119.97770 * 179.97438 * 17 16 15 44 44 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 45 45 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9859 -0.0850 -0.2527 11 6 5.9807 -1.7329 1.4368 12 8 7.2692 -1.1888 1.7297 13 6 7.9558 -1.7489 2.7604 14 6 7.4011 -2.8007 3.4746 15 6 8.1006 -3.3681 4.5221 16 6 9.3532 -2.8891 4.8591 17 6 9.9091 -1.8409 4.1495 18 6 9.2160 -1.2734 3.0962 19 17 9.9176 0.0373 2.2000 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 4.1540 0.8503 5.2062 27 1 1.7835 1.3605 5.1727 28 1 2.5735 -0.6603 6.2554 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 5.1509 -1.1482 -2.6697 35 1 3.7724 -2.2740 -2.6699 36 1 3.6264 -0.6885 -3.4657 37 1 3.6648 -2.0583 0.2386 38 1 5.3354 -1.6299 2.3092 39 1 6.0816 -2.7879 1.1820 40 1 6.4227 -3.1753 3.2124 41 1 7.6686 -4.1868 5.0784 42 1 9.8983 -3.3346 5.6781 43 1 10.8874 -1.4683 4.4149 44 1 2.2490 -1.6318 1.1526 45 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146275499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:08 Heat of formation + Delta-G solvation = -58.846619 kcal Electronic energy + Delta-G solvation = -28246.242897 eV Core-core repulsion = 24289.771834 eV Total energy + Delta-G solvation = -3956.471064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51675 -40.61955 -38.75422 -38.12294 -37.34449 -36.01801 -34.31223 -32.48301 -31.81813 -31.15499 -30.10841 -28.84171 -27.66963 -25.50018 -24.04731 -23.44651 -22.50368 -21.85338 -21.26178 -19.59320 -19.33618 -18.22077 -17.60107 -17.43012 -17.06570 -16.72918 -16.68861 -15.92258 -15.62432 -15.53309 -15.47631 -15.01308 -14.85688 -14.55023 -14.49875 -14.05084 -13.75920 -13.55315 -13.41818 -13.17095 -12.90635 -12.86734 -12.79366 -12.56396 -12.53961 -12.22780 -12.21265 -12.12352 -11.92513 -11.81317 -11.79693 -11.64647 -11.14473 -10.91171 -10.88737 -10.01913 -9.91063 -9.25025 -8.93863 -8.24537 -5.17300 0.13113 0.30556 1.16662 1.48656 1.56550 1.62316 1.64822 1.75628 2.62056 2.65944 2.69048 3.46895 3.53054 3.75965 3.77240 3.84455 3.91007 4.01979 4.07348 4.19421 4.27262 4.29352 4.33303 4.45173 4.47698 4.59073 4.75176 4.77858 4.78658 4.82775 4.98694 5.03255 5.06442 5.10530 5.25918 5.29376 5.32069 5.43934 5.52382 5.59353 5.68351 5.71171 6.13740 6.49679 6.64744 7.17735 7.23127 8.07721 8.21500 9.25265 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010410 B = 0.004267 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.058431 B = 6559.964327 C = 8219.132166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.119 4.119 5 C 0.148 3.852 6 H 0.054 0.946 7 C -0.152 4.152 8 N -0.686 5.686 9 C 0.524 3.476 10 O -0.575 6.575 11 C 0.043 3.957 12 O -0.306 6.306 13 C 0.111 3.889 14 C -0.204 4.204 15 C -0.073 4.073 16 C -0.138 4.138 17 C -0.074 4.074 18 C -0.091 4.091 19 Cl -0.073 7.073 20 N -0.731 5.731 21 C -0.314 4.314 22 H 0.044 0.956 23 C -0.082 4.082 24 N -0.956 5.956 25 Si 1.102 2.898 26 H -0.302 1.302 27 H -0.287 1.287 28 H -0.287 1.287 29 H 0.026 0.974 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.404 0.596 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.137 0.863 41 H 0.158 0.842 42 H 0.172 0.828 43 H 0.164 0.836 44 H 0.362 0.638 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.376 -6.152 -4.166 10.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.157 4.157 5 C 0.044 3.956 6 H 0.072 0.928 7 C -0.210 4.210 8 N -0.339 5.339 9 C 0.310 3.690 10 O -0.455 6.455 11 C -0.035 4.035 12 O -0.218 6.218 13 C 0.064 3.936 14 C -0.223 4.223 15 C -0.091 4.091 16 C -0.156 4.156 17 C -0.093 4.093 18 C -0.118 4.118 19 Cl -0.044 7.044 20 N -0.376 5.376 21 C -0.447 4.447 22 H 0.062 0.938 23 C -0.276 4.276 24 N -0.605 5.605 25 Si 0.931 3.069 26 H -0.231 1.231 27 H -0.213 1.213 28 H -0.213 1.213 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.129 0.871 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.241 0.759 38 H 0.115 0.885 39 H 0.129 0.871 40 H 0.155 0.845 41 H 0.176 0.824 42 H 0.189 0.811 43 H 0.181 0.819 44 H 0.197 0.803 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.265 -5.106 -3.166 10.218 hybrid contribution -0.948 0.038 -1.221 1.547 sum 7.317 -5.068 -4.387 9.923 Atomic orbital electron populations 1.22250 0.97532 1.01079 1.00404 1.20432 0.92753 0.94732 0.86285 0.95708 1.22143 0.92517 1.02344 0.98717 1.20986 0.93454 0.95832 0.85361 0.92777 1.22110 1.00600 1.02126 0.96146 1.45805 1.16425 1.37456 1.34179 1.20075 0.82236 0.83336 0.83388 1.90646 1.62776 1.31855 1.60244 1.22588 0.83777 0.98574 0.98525 1.86126 1.29919 1.57980 1.47809 1.19140 0.91354 0.93828 0.89254 1.21535 1.02345 0.98369 1.00072 1.21463 0.94314 0.98977 0.94302 1.21470 0.95880 0.96883 1.01380 1.21267 1.00534 0.95605 0.91873 1.20530 0.93702 0.97104 1.00493 1.98348 1.83360 1.47642 1.75059 1.42504 1.79382 1.09259 1.06466 1.20121 1.39632 0.94424 0.90488 0.93779 1.26240 1.00453 0.97955 1.02972 1.70983 1.53552 1.08048 1.27911 0.82884 0.75718 0.73992 0.74257 1.23063 1.21322 1.21332 0.95499 0.91115 0.93148 0.90053 0.87067 0.94361 0.90831 0.89385 0.75905 0.88500 0.87079 0.84510 0.82398 0.81088 0.81872 0.80324 0.94036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 9.49 71.98 0.68 -4.19 16 2 C 0.17 5.90 2.89 44.99 0.13 6.03 16 3 H 0.02 1.00 8.08 -2.38 -0.02 0.98 16 4 C -0.12 -3.12 4.43 30.60 0.14 -2.98 16 5 C 0.15 4.49 2.58 44.99 0.12 4.61 16 6 H 0.05 2.00 7.58 -2.39 -0.02 1.98 16 7 C -0.15 -3.65 9.48 71.98 0.68 -2.97 16 8 N -0.69 -23.65 3.80 -442.53 -1.68 -25.33 16 9 C 0.52 21.49 7.87 87.66 0.69 22.18 16 10 O -0.58 -27.72 16.16 16.01 0.26 -27.46 16 11 C 0.04 1.67 5.22 71.24 0.37 2.04 16 12 O -0.31 -12.59 9.13 -73.62 -0.67 -13.26 16 13 C 0.11 3.93 6.68 22.52 0.15 4.08 16 14 C -0.20 -6.31 9.04 22.36 0.20 -6.11 16 15 C -0.07 -1.71 10.04 22.26 0.22 -1.49 16 16 C -0.14 -2.76 10.04 22.28 0.22 -2.54 16 17 C -0.07 -1.75 9.83 22.28 0.22 -1.53 16 18 C -0.09 -2.89 6.33 22.41 0.14 -2.75 16 19 Cl -0.07 -2.38 28.50 -2.72 -0.08 -2.46 16 20 N -0.73 -31.76 3.84 -322.94 -1.24 -33.00 16 21 C -0.31 -16.40 9.93 84.03 0.83 -15.57 16 22 H 0.04 2.43 7.83 -2.91 -0.02 2.41 16 23 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 24 N -0.96 -50.71 13.44 21.65 0.29 -50.42 16 25 Si 1.10 51.50 29.92 68.60 2.05 53.55 16 26 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 27 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 28 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.40 13.24 6.51 -92.71 -0.60 12.64 16 38 H 0.10 4.20 7.40 -2.39 -0.02 4.18 16 39 H 0.11 3.45 7.66 -2.39 -0.02 3.43 16 40 H 0.14 4.30 6.30 -2.91 -0.02 4.29 16 41 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 42 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 43 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 44 H 0.36 15.36 4.54 -92.71 -0.42 14.94 16 45 H 0.25 12.60 6.77 -92.71 -0.63 11.97 16 Total: -1.00 -69.24 387.44 4.33 -64.91 By element: Atomic # 1 Polarization: 38.43 SS G_CDS: 0.13 Total: 38.55 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 5.27 Total: -5.08 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -2.63 Total: -108.75 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -0.41 Total: -40.72 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 2.05 Total: 53.55 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -0.08 Total: -2.46 kcal Total: -69.24 4.33 -64.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146275499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.060 kcal (2) G-P(sol) polarization free energy of solvation -69.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds