Wall clock time and date at job start Wed Apr 1 2020 00:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35651 * 116.99673 * 2 1 4 4 C 1.38674 * 120.14573 * 359.96890 * 3 2 1 5 5 C 1.38096 * 120.12176 * 180.02562 * 4 3 2 6 6 C 1.38482 * 120.41545 * 359.95710 * 5 4 3 7 7 C 1.37972 * 120.27980 * 359.76256 * 6 5 4 8 8 Cl 1.73598 * 120.05971 * 180.28177 * 7 6 5 9 9 C 1.39838 * 119.87279 * 0.53457 * 7 6 5 10 10 C 1.47464 * 120.20212 * 179.71565 * 9 7 6 11 11 O 1.21589 * 120.00266 * 269.73102 * 10 9 7 12 12 N 1.34781 * 119.99471 * 89.72770 * 10 9 7 13 13 C 1.46500 * 119.99835 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.47239 * 34.99990 * 13 12 10 15 15 C 1.53005 * 109.46961 * 274.99986 * 13 12 10 16 16 C 1.52996 * 109.47059 * 155.00281 * 13 12 10 17 17 C 1.52997 * 109.46894 * 294.99630 * 16 13 12 18 18 H 1.09000 * 109.47140 * 55.00428 * 17 16 13 19 19 C 1.53006 * 109.47164 * 175.00377 * 17 16 13 20 20 N 1.46500 * 109.47204 * 295.00302 * 17 16 13 21 21 C 1.36936 * 119.99910 * 155.00440 * 20 17 16 22 22 H 1.08005 * 120.00209 * 359.97438 * 21 20 17 23 23 C 1.38815 * 120.00133 * 180.02562 * 21 20 17 24 24 N 1.31621 * 119.99867 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00173 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46815 * 89.99842 * 25 23 21 27 27 H 1.48498 * 109.46933 * 209.99808 * 25 23 21 28 28 H 1.48497 * 109.47288 * 330.00320 * 25 23 21 29 29 H 1.08998 * 109.46933 * 60.01216 * 1 2 3 30 30 H 1.09004 * 109.46812 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47555 * 300.00421 * 1 2 3 32 32 H 1.08000 * 119.93840 * 0.02824 * 4 3 2 33 33 H 1.07996 * 119.79214 * 179.97438 * 5 4 3 34 34 H 1.07994 * 119.85822 * 179.97438 * 6 5 4 35 35 H 0.97005 * 119.99762 * 0.02562 * 12 10 9 36 36 H 1.09000 * 109.46901 * 60.00056 * 15 13 12 37 37 H 1.08995 * 109.46964 * 179.97438 * 15 13 12 38 38 H 1.09000 * 109.47146 * 300.00060 * 15 13 12 39 39 H 1.09001 * 109.46995 * 174.99879 * 16 13 12 40 40 H 1.08994 * 109.47388 * 54.99584 * 16 13 12 41 41 H 1.09001 * 109.46801 * 180.02562 * 19 17 16 42 42 H 1.09001 * 109.46998 * 299.99705 * 19 17 16 43 43 H 1.09000 * 109.47050 * 59.99996 * 19 17 16 44 44 H 0.96997 * 120.00110 * 334.99611 * 20 17 16 45 45 H 0.96997 * 120.00144 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3736 -0.0007 5 6 1.9198 3.6038 -0.0012 6 6 3.3022 3.6858 -0.0002 7 6 4.0672 2.5376 0.0063 8 17 5.7997 2.6471 0.0149 9 6 3.4443 1.2856 0.0006 10 6 4.2549 0.0538 0.0011 11 8 4.5896 -0.4543 -1.0516 12 7 4.6249 -0.5089 1.1687 13 6 5.4307 -1.7323 1.1693 14 1 6.1233 -1.7117 0.3279 15 6 4.5111 -2.9487 1.0432 16 6 6.2195 -1.8228 2.4771 17 6 7.2278 -0.6741 2.5450 18 1 6.7068 0.2747 2.4164 19 6 7.9291 -0.6907 3.9048 20 7 8.2220 -0.8335 1.4808 21 6 8.8927 0.2598 1.0012 22 1 8.6886 1.2396 1.4071 23 6 9.8344 0.1089 -0.0075 24 7 10.0829 -1.0851 -0.5025 25 14 10.7489 1.6003 -0.6622 26 1 11.9908 1.8048 0.1260 27 1 11.0986 1.3797 -2.0885 28 1 9.8845 2.8020 -0.5446 29 1 -0.3633 0.5136 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2138 2.3186 -0.0007 33 1 1.3286 4.5076 -0.0021 34 1 3.7834 4.6526 -0.0010 35 1 4.3576 -0.1036 2.0085 36 1 3.9491 -2.8842 0.1114 37 1 5.1107 -3.8589 1.0432 38 1 3.8185 -2.9693 1.8846 39 1 6.7496 -2.7744 2.5166 40 1 5.5330 -1.7540 3.3210 41 1 8.6471 0.1280 3.9532 42 1 7.1893 -0.5721 4.6965 43 1 8.4500 -1.6395 4.0333 44 1 8.4052 -1.7134 1.1161 45 1 10.7412 -1.1906 -1.2071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146614250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:36 Heat of formation + Delta-G solvation = -47.595500 kcal Electronic energy + Delta-G solvation = -28432.060401 eV Core-core repulsion = 24476.077222 eV Total energy + Delta-G solvation = -3955.983179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.66921 -39.05868 -37.75500 -36.61798 -36.15199 -34.30164 -32.19377 -31.63428 -30.29155 -30.06151 -28.49017 -27.62908 -26.22404 -24.21560 -23.48868 -22.38209 -21.29067 -20.27500 -19.59463 -18.56398 -17.45967 -16.97414 -16.70276 -16.16356 -15.74101 -15.39502 -15.00250 -14.68778 -14.43085 -13.97278 -13.85444 -13.70262 -13.36660 -13.29759 -12.81955 -12.67811 -12.54049 -12.09322 -11.98812 -11.95241 -11.89223 -11.64131 -11.56600 -11.51632 -11.01418 -10.93985 -10.76704 -10.75724 -10.52223 -10.32278 -10.13940 -9.79520 -9.54165 -9.51174 -8.94248 -8.77629 -8.56326 -8.50623 -6.81068 -5.62939 -2.89624 0.79370 1.04794 2.10947 2.98529 3.03480 3.26654 3.50506 3.55470 3.56707 3.57586 4.46085 4.66604 4.70566 4.76777 4.83987 4.92252 5.01888 5.06713 5.17878 5.24042 5.40434 5.53409 5.59573 5.72167 5.80577 5.84646 5.93031 6.00130 6.03645 6.05651 6.11362 6.23537 6.24133 6.38618 6.47001 6.53972 6.67359 6.82933 6.92690 7.01140 7.04417 7.17057 7.81836 7.90523 8.55571 8.64151 9.66994 10.24771 10.59284 11.60164 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011444 B = 0.004565 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.125561 B = 6131.964832 C = 7482.126333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.304 6.304 3 C 0.169 3.831 4 C -0.213 4.213 5 C -0.056 4.056 6 C -0.153 4.153 7 C 0.024 3.976 8 Cl -0.015 7.015 9 C -0.149 4.149 10 C 0.577 3.423 11 O -0.517 6.517 12 N -0.703 5.703 13 C 0.145 3.855 14 H 0.106 0.894 15 C -0.159 4.159 16 C -0.130 4.130 17 C 0.171 3.829 18 H 0.047 0.953 19 C -0.165 4.165 20 N -0.719 5.719 21 C -0.224 4.224 22 H 0.065 0.935 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.895 3.105 26 H -0.292 1.292 27 H -0.292 1.292 28 H -0.284 1.284 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.393 0.607 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.033 0.967 43 H 0.045 0.955 44 H 0.383 0.617 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.787 5.445 5.946 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.216 6.216 3 C 0.122 3.878 4 C -0.232 4.232 5 C -0.074 4.074 6 C -0.172 4.172 7 C -0.003 4.003 8 Cl 0.015 6.985 9 C -0.154 4.154 10 C 0.361 3.639 11 O -0.392 6.392 12 N -0.353 5.353 13 C 0.041 3.959 14 H 0.124 0.876 15 C -0.218 4.218 16 C -0.169 4.169 17 C 0.061 3.939 18 H 0.065 0.935 19 C -0.225 4.225 20 N -0.360 5.360 21 C -0.355 4.355 22 H 0.083 0.917 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.727 3.273 26 H -0.219 1.219 27 H -0.218 1.218 28 H -0.210 1.210 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.226 0.774 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.216 0.784 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.222 5.019 5.116 23.349 hybrid contribution 0.399 0.982 -0.098 1.065 sum -21.822 6.001 5.018 23.182 Atomic orbital electron populations 1.23138 0.77835 1.04403 1.01445 1.86117 1.21698 1.26063 1.87740 1.18731 0.90127 0.84932 0.94001 1.21218 1.00339 0.91908 1.09726 1.20969 0.93758 0.97349 0.95363 1.20956 0.93621 0.97511 1.05085 1.20917 0.87760 0.92679 0.98992 1.98528 1.05696 1.98319 1.95989 1.19149 0.91124 0.93993 1.11104 1.17554 0.79088 0.82724 0.84573 1.90828 1.54322 1.62874 1.31196 1.45869 1.54093 1.27860 1.07507 1.21045 0.91984 0.82232 1.00642 0.87581 1.22167 0.99909 0.98108 1.01578 1.22162 0.98038 1.01076 0.95613 1.20223 0.89506 0.95522 0.88623 0.93468 1.22457 1.00190 1.01540 0.98300 1.42377 1.44609 1.08005 1.41015 1.19076 1.14544 0.87954 1.13946 0.91736 1.24632 1.00350 0.96124 0.99592 1.69634 1.37294 1.20504 1.30592 0.86364 0.80027 0.82641 0.78317 1.21936 1.21803 1.20972 0.92362 0.87895 0.92366 0.84555 0.84606 0.84257 0.77354 0.92478 0.91843 0.93215 0.90643 0.92159 0.92986 0.94827 0.93589 0.78366 0.93716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.75 9.94 -18.65 -0.19 -3.94 16 3 C 0.17 2.18 6.70 -38.70 -0.26 1.92 16 4 C -0.21 -2.03 9.03 -39.47 -0.36 -2.38 16 5 C -0.06 -0.50 10.03 -39.54 -0.40 -0.90 16 6 C -0.15 -1.73 9.81 -39.59 -0.39 -2.12 16 7 C 0.02 0.37 6.35 -39.08 -0.25 0.12 16 8 Cl -0.01 -0.27 28.04 -51.86 -1.45 -1.73 16 9 C -0.15 -2.35 5.64 -104.82 -0.59 -2.94 16 10 C 0.58 10.80 5.81 -12.50 -0.07 10.72 16 11 O -0.52 -12.04 16.77 5.29 0.09 -11.95 16 12 N -0.70 -11.53 4.44 -54.87 -0.24 -11.77 16 13 C 0.14 2.50 2.52 -67.93 -0.17 2.33 16 14 H 0.11 2.37 7.05 -51.93 -0.37 2.01 16 15 C -0.16 -2.35 9.48 37.16 0.35 -2.00 16 16 C -0.13 -2.07 4.29 -26.73 -0.11 -2.19 16 17 C 0.17 3.33 2.84 -67.93 -0.19 3.14 16 18 H 0.05 0.95 7.56 -51.93 -0.39 0.56 16 19 C -0.16 -2.95 9.49 37.16 0.35 -2.60 16 20 N -0.72 -17.83 4.49 -53.42 -0.24 -18.07 16 21 C -0.22 -6.24 9.93 -15.06 -0.15 -6.39 16 22 H 0.06 1.79 7.83 -52.48 -0.41 1.37 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -28.90 13.06 55.49 0.72 -28.18 16 25 Si 0.89 23.42 29.55 -169.99 -5.02 18.40 16 26 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 27 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 28 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 29 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 32 H 0.14 0.87 6.30 -52.49 -0.33 0.54 16 33 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 34 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.39 5.45 8.59 -40.82 -0.35 5.10 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 45 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 392.99 15.07 5.92 5.92 Total: -1.00 -35.31 392.99 -8.50 -43.81 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.75 Total: 10.05 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -1.34 Total: -2.55 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.24 Total: -58.02 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.10 Total: -15.89 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.02 Total: 18.40 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.45 Total: -1.73 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.31 -8.50 -43.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146614250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.787 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds