Wall clock time and date at job start Wed Apr 1 2020 00:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35658 * 116.99871 * 2 1 4 4 C 1.38669 * 120.14084 * 0.23470 * 3 2 1 5 5 C 1.38101 * 120.11519 * 180.29889 * 4 3 2 6 6 C 1.38480 * 120.41444 * 359.72169 * 5 4 3 7 7 C 1.37966 * 120.28805 * 0.02562 * 6 5 4 8 8 Cl 1.73594 * 120.06617 * 179.97438 * 7 6 5 9 9 C 1.39846 * 119.86623 * 359.97438 * 7 6 5 10 10 C 1.47456 * 120.19955 * 179.97438 * 9 7 6 11 11 O 1.21601 * 119.99706 * 89.99748 * 10 9 7 12 12 N 1.34777 * 120.00496 * 270.00590 * 10 9 7 13 13 C 1.46495 * 120.00230 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47062 * 324.99175 * 13 12 10 15 15 C 1.52999 * 109.47657 * 84.99077 * 13 12 10 16 16 C 1.53002 * 109.47317 * 204.99663 * 13 12 10 17 17 C 1.53003 * 109.47269 * 64.99221 * 16 13 12 18 18 H 1.09000 * 109.46953 * 305.00936 * 17 16 13 19 19 C 1.52996 * 109.47332 * 185.00423 * 17 16 13 20 20 N 1.46505 * 109.46807 * 65.00478 * 17 16 13 21 21 C 1.36931 * 119.99788 * 205.00000 * 20 17 16 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 17 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 17 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48508 * 109.46872 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 119.99997 * 25 23 21 28 28 H 1.48498 * 109.47018 * 240.00044 * 25 23 21 29 29 H 1.09004 * 109.46572 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46588 * 299.99780 * 1 2 3 31 31 H 1.08997 * 109.46999 * 60.00153 * 1 2 3 32 32 H 1.07997 * 119.94272 * 0.04130 * 4 3 2 33 33 H 1.08000 * 119.79419 * 179.69779 * 5 4 3 34 34 H 1.08000 * 119.85623 * 179.97438 * 6 5 4 35 35 H 0.97000 * 119.99724 * 359.97438 * 12 10 9 36 36 H 1.08991 * 109.47415 * 300.00577 * 15 13 12 37 37 H 1.09005 * 109.46583 * 60.00443 * 15 13 12 38 38 H 1.09001 * 109.47265 * 179.97438 * 15 13 12 39 39 H 1.09000 * 109.46766 * 304.99737 * 16 13 12 40 40 H 1.08992 * 109.47398 * 184.99831 * 16 13 12 41 41 H 1.09002 * 109.46807 * 300.00318 * 19 17 16 42 42 H 1.08998 * 109.47019 * 59.99816 * 19 17 16 43 43 H 1.08998 * 109.47099 * 180.02562 * 19 17 16 44 44 H 0.97000 * 119.99792 * 24.99795 * 20 17 16 45 45 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2925 2.3735 0.0049 5 6 1.9199 3.6038 -0.0013 6 6 3.3023 3.6857 -0.0067 7 6 4.0674 2.5376 -0.0064 8 17 5.7998 2.6470 -0.0139 9 6 3.4444 1.2856 -0.0001 10 6 4.2549 0.0538 -0.0004 11 8 4.5939 -0.4511 1.0527 12 7 4.6203 -0.5124 -1.1676 13 6 5.4251 -1.7365 -1.1677 14 1 6.1208 -1.7140 -0.3290 15 6 4.5052 -2.9518 -1.0347 16 6 6.2091 -1.8313 -2.4782 17 6 7.2179 -0.6834 -2.5531 18 1 6.6981 0.2661 -2.4252 19 6 7.9141 -0.7043 -3.9154 20 7 8.2160 -0.8405 -1.4922 21 6 8.8892 0.2536 -1.0181 22 1 8.6842 1.2324 -1.4260 23 6 9.8308 0.1055 -0.0089 24 7 10.0803 -1.0872 0.4885 25 14 10.7436 1.5992 0.6432 26 1 10.2844 2.8136 -0.0776 27 1 10.4703 1.7515 2.0948 28 1 12.2023 1.4197 0.4303 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2139 2.3186 0.0094 33 1 1.3288 4.5077 -0.0024 34 1 3.7836 4.6525 -0.0120 35 1 4.3497 -0.1098 -2.0076 36 1 3.9467 -2.8843 -0.1012 37 1 3.8095 -2.9744 -1.8736 38 1 5.1040 -3.8626 -1.0353 39 1 5.5195 -1.7644 -3.3197 40 1 6.7383 -2.7833 -2.5169 41 1 8.4339 -1.6539 -4.0432 42 1 7.1715 -0.5875 -4.7047 43 1 8.6331 0.1131 -3.9686 44 1 8.3999 -1.7196 -1.1256 45 1 10.7385 -1.1907 1.1935 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146614252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:41 Heat of formation + Delta-G solvation = -47.643432 kcal Electronic energy + Delta-G solvation = -28432.183049 eV Core-core repulsion = 24476.197791 eV Total energy + Delta-G solvation = -3955.985257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.67074 -39.05903 -37.75727 -36.61824 -36.15727 -34.30344 -32.19586 -31.63644 -30.29508 -30.06283 -28.49203 -27.63026 -26.22479 -24.21822 -23.49144 -22.38443 -21.29253 -20.27633 -19.59649 -18.56620 -17.46129 -16.97582 -16.70399 -16.16374 -15.74307 -15.39760 -15.00696 -14.68980 -14.43259 -13.97307 -13.85592 -13.70117 -13.36932 -13.29687 -12.82187 -12.68086 -12.54452 -12.09492 -11.98937 -11.95552 -11.89380 -11.64188 -11.56840 -11.51715 -11.01741 -10.94567 -10.77126 -10.76509 -10.52793 -10.32184 -10.11989 -9.78606 -9.54441 -9.51613 -8.94481 -8.78235 -8.56434 -8.50893 -6.81124 -5.63307 -2.89859 0.79118 1.04592 2.10336 2.98321 3.03278 3.26430 3.50443 3.54996 3.56574 3.58148 4.45935 4.66441 4.70369 4.76662 4.83878 4.91987 5.01718 5.06492 5.17762 5.23899 5.40229 5.53290 5.59572 5.71944 5.80426 5.84454 5.92776 6.00032 6.03427 6.05667 6.11227 6.23298 6.24052 6.38516 6.46914 6.53917 6.67268 6.82841 6.92593 7.00940 7.04321 7.17011 7.82285 7.90400 8.55213 8.64034 9.66790 10.24579 10.59098 11.59875 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011434 B = 0.004570 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.179937 B = 6125.228276 C = 7478.790926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.304 6.304 3 C 0.169 3.831 4 C -0.213 4.213 5 C -0.056 4.056 6 C -0.153 4.153 7 C 0.025 3.975 8 Cl -0.016 7.016 9 C -0.149 4.149 10 C 0.577 3.423 11 O -0.517 6.517 12 N -0.703 5.703 13 C 0.145 3.855 14 H 0.106 0.894 15 C -0.159 4.159 16 C -0.130 4.130 17 C 0.171 3.829 18 H 0.047 0.953 19 C -0.165 4.165 20 N -0.719 5.719 21 C -0.223 4.223 22 H 0.065 0.935 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.893 3.107 26 H -0.282 1.282 27 H -0.292 1.292 28 H -0.293 1.293 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.393 0.607 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.045 0.955 42 H 0.033 0.967 43 H 0.051 0.949 44 H 0.383 0.617 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.819 5.448 -5.939 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.216 6.216 3 C 0.122 3.878 4 C -0.232 4.232 5 C -0.074 4.074 6 C -0.172 4.172 7 C -0.003 4.003 8 Cl 0.014 6.986 9 C -0.154 4.154 10 C 0.360 3.640 11 O -0.392 6.392 12 N -0.353 5.353 13 C 0.041 3.959 14 H 0.124 0.876 15 C -0.218 4.218 16 C -0.169 4.169 17 C 0.061 3.939 18 H 0.065 0.935 19 C -0.225 4.225 20 N -0.360 5.360 21 C -0.355 4.355 22 H 0.083 0.917 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.725 3.275 26 H -0.208 1.208 27 H -0.219 1.219 28 H -0.220 1.220 29 H 0.121 0.879 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.226 0.774 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.216 0.784 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -22.248 5.029 -5.123 23.378 hybrid contribution 0.392 0.973 0.113 1.055 sum -21.856 6.002 -5.009 23.213 Atomic orbital electron populations 1.23139 0.77832 1.04403 1.01445 1.86118 1.21700 1.26062 1.87745 1.18731 0.90125 0.84934 0.94009 1.21219 1.00344 0.91908 1.09707 1.20971 0.93756 0.97351 0.95361 1.20955 0.93621 0.97510 1.05084 1.20906 0.87709 0.92681 0.99005 1.98524 1.05765 1.98321 1.95994 1.19147 0.91122 0.93996 1.11095 1.17555 0.79103 0.82716 0.84581 1.90832 1.54176 1.63037 1.31174 1.45863 1.54129 1.27813 1.07509 1.21044 0.92033 0.82222 1.00612 0.87579 1.22166 0.99902 0.98112 1.01579 1.22164 0.98057 1.01075 0.95594 1.20223 0.89473 0.95527 0.88650 0.93471 1.22453 1.00179 1.01550 0.98302 1.42385 1.44265 1.08065 1.41303 1.19123 1.14412 0.88001 1.13931 0.91671 1.24629 1.00386 0.96118 0.99571 1.69644 1.37316 1.20527 1.30501 0.86317 0.79750 0.82589 0.78879 1.20752 1.21884 1.21990 0.87893 0.92361 0.92365 0.84551 0.84601 0.84251 0.77355 0.92474 0.93222 0.91843 0.92161 0.90641 0.93593 0.94820 0.92977 0.78368 0.93765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.74 9.95 -18.68 -0.19 -3.93 16 3 C 0.17 2.17 6.70 -38.70 -0.26 1.91 16 4 C -0.21 -2.02 9.03 -39.47 -0.36 -2.38 16 5 C -0.06 -0.50 10.03 -39.54 -0.40 -0.90 16 6 C -0.15 -1.72 9.81 -39.59 -0.39 -2.11 16 7 C 0.02 0.37 6.35 -39.08 -0.25 0.12 16 8 Cl -0.02 -0.28 28.04 -51.86 -1.45 -1.74 16 9 C -0.15 -2.34 5.64 -104.82 -0.59 -2.93 16 10 C 0.58 10.79 5.81 -12.51 -0.07 10.71 16 11 O -0.52 -12.04 16.77 5.28 0.09 -11.95 16 12 N -0.70 -11.52 4.44 -54.87 -0.24 -11.76 16 13 C 0.14 2.50 2.52 -67.93 -0.17 2.33 16 14 H 0.11 2.37 7.05 -51.93 -0.37 2.01 16 15 C -0.16 -2.35 9.48 37.16 0.35 -2.00 16 16 C -0.13 -2.07 4.29 -26.73 -0.11 -2.19 16 17 C 0.17 3.33 2.84 -67.93 -0.19 3.14 16 18 H 0.05 0.95 7.56 -51.93 -0.39 0.56 16 19 C -0.16 -2.95 9.49 37.16 0.35 -2.60 16 20 N -0.72 -17.83 4.49 -53.42 -0.24 -18.07 16 21 C -0.22 -6.23 9.93 -15.06 -0.15 -6.38 16 22 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -28.90 13.06 55.49 0.72 -28.17 16 25 Si 0.89 23.41 29.55 -169.99 -5.02 18.39 16 26 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 28 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 31 H 0.06 0.30 7.67 -51.93 -0.40 -0.10 16 32 H 0.14 0.87 6.30 -52.49 -0.33 0.54 16 33 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.39 5.44 8.59 -40.82 -0.35 5.09 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 45 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 392.99 15.07 5.92 5.92 Total: -1.00 -35.35 392.99 -8.50 -43.85 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -6.75 Total: 9.99 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -1.34 Total: -2.53 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.24 Total: -58.01 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.10 Total: -15.88 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -5.02 Total: 18.39 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.45 Total: -1.74 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.35 -8.50 -43.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146614252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.791 kcal (2) G-P(sol) polarization free energy of solvation -35.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds