Wall clock time and date at job start Wed Apr 1 2020 00:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34239 * 116.99788 * 2 1 4 4 O 1.20828 * 119.99942 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99856 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.46741 * 60.00042 * 5 3 2 7 7 C 1.52996 * 109.47282 * 300.00012 * 5 3 2 8 8 C 1.50694 * 109.47432 * 174.99782 * 7 5 3 9 9 C 1.38233 * 119.60308 * 124.99757 * 8 7 5 10 10 C 1.38613 * 119.17625 * 180.02562 * 9 8 7 11 11 C 1.38780 * 118.40577 * 0.25575 * 10 9 8 12 12 Cl 1.73608 * 120.42624 * 179.72626 * 11 10 9 13 13 C 1.38302 * 119.13930 * 359.50003 * 11 10 9 14 14 N 1.31846 * 119.60674 * 305.02261 * 8 7 5 15 15 N 1.46895 * 109.47217 * 179.97438 * 5 3 2 16 16 C 1.46898 * 111.00079 * 275.00396 * 15 5 3 17 17 H 1.09001 * 109.47227 * 34.99719 * 16 15 5 18 18 C 1.52999 * 109.47008 * 274.99736 * 16 15 5 19 19 C 1.53002 * 109.47356 * 154.99847 * 16 15 5 20 20 C 1.53000 * 109.47114 * 294.99794 * 19 16 15 21 21 C 1.50698 * 109.47310 * 179.97438 * 20 19 16 22 22 H 1.08001 * 119.99796 * 0.02562 * 21 20 19 23 23 C 1.37879 * 120.00090 * 179.97438 * 21 20 19 24 24 N 1.31505 * 119.99813 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99880 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46939 * 60.00343 * 25 23 21 27 27 H 1.48498 * 109.47163 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47455 * 300.00632 * 25 23 21 29 29 H 1.09001 * 109.47017 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47063 * 300.00234 * 1 2 3 31 31 H 1.08998 * 109.47246 * 59.99894 * 1 2 3 32 32 H 1.09004 * 109.47110 * 54.99540 * 7 5 3 33 33 H 1.08995 * 109.46994 * 295.00170 * 7 5 3 34 34 H 1.08002 * 120.41515 * 0.04798 * 9 8 7 35 35 H 1.08002 * 120.79267 * 179.97438 * 10 9 8 36 36 H 1.08004 * 119.62475 * 180.23223 * 13 11 10 37 37 H 1.00902 * 110.99621 * 38.95418 * 15 5 3 38 38 H 1.08998 * 109.47083 * 60.00184 * 18 16 15 39 39 H 1.09001 * 109.47136 * 180.02562 * 18 16 15 40 40 H 1.09001 * 109.47112 * 300.00053 * 18 16 15 41 41 H 1.08996 * 109.46860 * 54.99444 * 19 16 15 42 42 H 1.09001 * 109.47369 * 174.99655 * 19 16 15 43 43 H 1.08997 * 109.46930 * 300.00135 * 20 19 16 44 44 H 1.09001 * 109.47116 * 59.99706 * 20 19 16 45 45 H 0.97007 * 120.00108 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9557 0.7810 -0.8909 7 6 4.1139 0.5812 1.2483 8 6 5.6193 0.5518 1.1873 9 6 6.3555 1.0783 2.2321 10 6 7.7397 1.0471 2.1666 11 6 8.3351 0.4892 1.0440 12 17 10.0645 0.4293 0.9041 13 6 7.5329 -0.0226 0.0404 14 7 6.2186 0.0246 0.1379 15 7 3.9828 2.6837 -0.0011 16 6 4.0169 3.2221 -1.3674 17 1 3.2141 2.7755 -1.9541 18 6 5.3644 2.8917 -2.0123 19 6 3.8317 4.7402 -1.3222 20 6 2.4342 5.0680 -0.7927 21 6 2.2520 6.5632 -0.7475 22 1 3.0528 7.2146 -1.0651 23 6 1.0626 7.0997 -0.3018 24 7 0.0874 6.3065 0.0844 25 14 0.8366 8.9531 -0.2465 26 1 0.9920 9.5117 -1.6136 27 1 -0.5198 9.2712 0.2675 28 1 1.8581 9.5498 0.6511 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.7321 -0.4388 1.2942 33 1 3.7968 1.1281 2.1362 34 1 5.8583 1.5084 3.0891 35 1 8.3404 1.4514 2.9679 36 1 7.9880 -0.4620 -0.8350 37 1 3.3831 3.2382 0.5913 38 1 5.4963 1.8102 -2.0446 39 1 5.3899 3.2916 -3.0260 40 1 6.1672 3.3383 -1.4257 41 1 4.5817 5.1782 -0.6635 42 1 3.9455 5.1502 -2.3257 43 1 1.6842 4.6299 -1.4513 44 1 2.3204 4.6579 0.2108 45 1 -0.7493 6.6838 0.3984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:36 Heat of formation + Delta-G solvation = -69.780510 kcal Electronic energy + Delta-G solvation = -27830.577238 eV Core-core repulsion = 23873.632045 eV Total energy + Delta-G solvation = -3956.945193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.71364 -40.13980 -37.51857 -36.84395 -35.89998 -34.33806 -32.76954 -32.59236 -31.08628 -29.33710 -28.24486 -27.41561 -25.15475 -24.46558 -23.81325 -22.00663 -21.44770 -20.22164 -19.59853 -17.71780 -17.25386 -16.84686 -16.65816 -16.20933 -16.13455 -15.62285 -15.26317 -14.65057 -14.43723 -14.32310 -13.84624 -13.69301 -13.51238 -13.00405 -12.90916 -12.76098 -12.43525 -12.33313 -12.23449 -11.94062 -11.87318 -11.65385 -11.49551 -11.34454 -11.31630 -11.04686 -10.84848 -10.58369 -10.45512 -10.28817 -10.25951 -9.99293 -9.67402 -9.65773 -9.17207 -8.93390 -8.90784 -8.33168 -8.20739 -5.88445 -3.91722 0.77340 1.01916 1.82700 2.44731 2.89024 3.37505 3.41550 3.44279 3.52284 4.05975 4.36285 4.42513 4.52666 4.54709 4.74737 4.96999 5.02118 5.16573 5.21357 5.25671 5.34242 5.44578 5.45232 5.53533 5.58564 5.65169 5.68728 5.76107 5.80561 5.89031 5.95735 6.18667 6.34708 6.38208 6.53219 6.53994 6.58598 6.93900 7.17393 7.30513 7.67473 7.73509 7.83313 7.97163 8.01621 8.14747 8.53653 9.16322 9.71104 11.21269 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010565 B = 0.003212 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.538179 B = 8713.963517 C =10472.892145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.366 6.366 3 C 0.413 3.587 4 O -0.465 6.465 5 C 0.107 3.893 6 H 0.122 0.878 7 C -0.056 4.056 8 C 0.167 3.833 9 C -0.146 4.146 10 C -0.063 4.063 11 C -0.099 4.099 12 Cl -0.065 7.065 13 C 0.120 3.880 14 N -0.463 5.463 15 N -0.655 5.655 16 C 0.084 3.916 17 H 0.039 0.961 18 C -0.136 4.136 19 C -0.114 4.114 20 C 0.029 3.971 21 C -0.522 4.522 22 H 0.052 0.948 23 C 0.058 3.942 24 N -0.888 5.888 25 Si 0.887 3.113 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.278 1.278 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.161 0.839 37 H 0.364 0.636 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.013 0.987 44 H 0.021 0.979 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.073 -18.307 3.539 22.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.283 6.283 3 C 0.251 3.749 4 O -0.349 6.349 5 C -0.007 4.007 6 H 0.139 0.861 7 C -0.095 4.095 8 C 0.029 3.971 9 C -0.166 4.166 10 C -0.090 4.090 11 C -0.128 4.128 12 Cl -0.036 7.036 13 C -0.038 4.038 14 N -0.172 5.172 15 N -0.291 5.291 16 C -0.025 4.025 17 H 0.057 0.943 18 C -0.194 4.194 19 C -0.152 4.152 20 C -0.008 4.008 21 C -0.561 4.561 22 H 0.070 0.930 23 C -0.143 4.143 24 N -0.527 5.527 25 Si 0.716 3.284 26 H -0.204 1.204 27 H -0.214 1.214 28 H -0.203 1.203 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.178 0.822 37 H 0.189 0.811 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.032 0.968 44 H 0.039 0.961 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.941 -18.448 2.945 22.727 hybrid contribution -0.730 1.668 0.500 1.888 sum 12.211 -16.781 3.444 21.037 Atomic orbital electron populations 1.23210 0.76949 1.02977 1.02845 1.86506 1.23052 1.34148 1.84556 1.25385 0.93652 0.81942 0.73892 1.90940 1.66240 1.35442 1.42242 1.21475 0.84506 0.93641 1.01034 0.86083 1.20522 0.89078 1.01874 0.98009 1.20934 0.96105 0.91210 0.88825 1.21971 0.93296 1.00561 1.00806 1.21490 0.95036 0.95902 0.96526 1.22042 0.85817 1.06098 0.98838 1.98374 1.10003 1.97282 1.97947 1.22674 0.88588 0.95511 0.97051 1.67547 1.09947 1.15749 1.23946 1.61064 1.55332 1.00047 1.12653 1.21638 0.95880 0.97244 0.87778 0.94250 1.21811 0.97480 1.00635 0.99488 1.21836 1.01364 0.91062 1.00905 1.19042 0.89630 0.95782 0.96366 1.21234 0.99333 0.92335 1.43175 0.93005 1.25015 0.96177 0.97514 0.95632 1.70006 1.04637 1.34276 1.43776 0.86741 0.77044 0.86370 0.78292 1.20384 1.21421 1.20326 0.88627 0.91914 0.91965 0.88249 0.89273 0.83859 0.84019 0.82190 0.81067 0.93224 0.92987 0.92677 0.92671 0.92841 0.96849 0.96103 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.48 16 2 O -0.37 -5.09 10.37 -39.28 -0.41 -5.50 16 3 C 0.41 6.66 6.96 36.01 0.25 6.91 16 4 O -0.47 -9.70 14.66 -18.75 -0.27 -9.98 16 5 C 0.11 1.48 2.24 -68.87 -0.15 1.33 16 6 H 0.12 1.66 6.77 -51.93 -0.35 1.31 16 7 C -0.06 -0.62 5.26 -27.89 -0.15 -0.76 16 8 C 0.17 1.83 5.91 -82.59 -0.49 1.34 16 9 C -0.15 -1.42 9.71 -39.44 -0.38 -1.80 16 10 C -0.06 -0.58 9.98 -39.24 -0.39 -0.97 16 11 C -0.10 -0.96 6.34 -39.36 -0.25 -1.21 16 12 Cl -0.06 -0.57 28.99 -51.86 -1.50 -2.08 16 13 C 0.12 1.21 10.99 -17.51 -0.19 1.02 16 14 N -0.46 -5.29 9.78 -9.45 -0.09 -5.38 16 15 N -0.65 -10.62 5.62 -100.96 -0.57 -11.19 16 16 C 0.08 1.48 2.29 -67.71 -0.15 1.32 16 17 H 0.04 0.75 7.64 -51.93 -0.40 0.36 16 18 C -0.14 -2.03 9.40 37.16 0.35 -1.68 16 19 C -0.11 -2.42 4.74 -26.73 -0.13 -2.54 16 20 C 0.03 0.77 4.44 -27.88 -0.12 0.64 16 21 C -0.52 -15.24 9.11 -34.44 -0.31 -15.55 16 22 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 23 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 24 N -0.89 -27.53 13.29 55.43 0.74 -26.79 16 25 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 31 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 32 H 0.10 0.96 7.99 -51.93 -0.42 0.54 16 33 H 0.09 0.91 7.87 -51.93 -0.41 0.50 16 34 H 0.14 1.13 7.95 -52.49 -0.42 0.71 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 37 H 0.36 6.91 5.49 -39.29 -0.22 6.70 16 38 H 0.05 0.69 7.42 -51.93 -0.39 0.30 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.02 0.58 6.05 -51.93 -0.31 0.27 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 391.43 15.07 5.90 5.90 Total: -1.00 -33.46 391.43 -9.06 -42.52 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.67 Total: 4.13 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -1.16 Total: -8.85 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.08 Total: -43.36 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.68 Total: -15.47 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.46 -9.06 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.265 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds