Wall clock time and date at job start Wed Apr 1 2020 00:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34239 * 116.99788 * 2 1 4 4 O 1.20828 * 119.99942 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99856 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.46741 * 60.00042 * 5 3 2 7 7 C 1.52996 * 109.47282 * 300.00012 * 5 3 2 8 8 C 1.50694 * 109.47432 * 174.99782 * 7 5 3 9 9 C 1.38233 * 119.60308 * 124.99757 * 8 7 5 10 10 C 1.38613 * 119.17625 * 180.02562 * 9 8 7 11 11 C 1.38780 * 118.40577 * 0.25575 * 10 9 8 12 12 Cl 1.73608 * 120.42624 * 179.72626 * 11 10 9 13 13 C 1.38302 * 119.13930 * 359.50003 * 11 10 9 14 14 N 1.31846 * 119.60674 * 305.02261 * 8 7 5 15 15 N 1.46895 * 109.47217 * 179.97438 * 5 3 2 16 16 C 1.46898 * 111.00079 * 275.00396 * 15 5 3 17 17 H 1.09001 * 109.47227 * 34.99719 * 16 15 5 18 18 C 1.52999 * 109.47008 * 274.99736 * 16 15 5 19 19 C 1.53002 * 109.47356 * 154.99847 * 16 15 5 20 20 C 1.53000 * 109.47114 * 294.99794 * 19 16 15 21 21 C 1.50698 * 109.47310 * 179.97438 * 20 19 16 22 22 H 1.08001 * 119.99796 * 0.02562 * 21 20 19 23 23 C 1.37879 * 120.00090 * 179.97438 * 21 20 19 24 24 N 1.31505 * 119.99813 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99880 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46939 * 60.00343 * 25 23 21 27 27 H 1.48498 * 109.47163 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47455 * 300.00632 * 25 23 21 29 29 H 1.09001 * 109.47017 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47063 * 300.00234 * 1 2 3 31 31 H 1.08998 * 109.47246 * 59.99894 * 1 2 3 32 32 H 1.09004 * 109.47110 * 54.99540 * 7 5 3 33 33 H 1.08995 * 109.46994 * 295.00170 * 7 5 3 34 34 H 1.08002 * 120.41515 * 0.04798 * 9 8 7 35 35 H 1.08002 * 120.79267 * 179.97438 * 10 9 8 36 36 H 1.08004 * 119.62475 * 180.23223 * 13 11 10 37 37 H 1.00902 * 110.99621 * 38.95418 * 15 5 3 38 38 H 1.08998 * 109.47083 * 60.00184 * 18 16 15 39 39 H 1.09001 * 109.47136 * 180.02562 * 18 16 15 40 40 H 1.09001 * 109.47112 * 300.00053 * 18 16 15 41 41 H 1.08996 * 109.46860 * 54.99444 * 19 16 15 42 42 H 1.09001 * 109.47369 * 174.99655 * 19 16 15 43 43 H 1.08997 * 109.46930 * 300.00135 * 20 19 16 44 44 H 1.09001 * 109.47116 * 59.99706 * 20 19 16 45 45 H 0.97007 * 120.00108 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9557 0.7810 -0.8909 7 6 4.1139 0.5812 1.2483 8 6 5.6193 0.5518 1.1873 9 6 6.3555 1.0783 2.2321 10 6 7.7397 1.0471 2.1666 11 6 8.3351 0.4892 1.0440 12 17 10.0645 0.4293 0.9041 13 6 7.5329 -0.0226 0.0404 14 7 6.2186 0.0246 0.1379 15 7 3.9828 2.6837 -0.0011 16 6 4.0169 3.2221 -1.3674 17 1 3.2141 2.7755 -1.9541 18 6 5.3644 2.8917 -2.0123 19 6 3.8317 4.7402 -1.3222 20 6 2.4342 5.0680 -0.7927 21 6 2.2520 6.5632 -0.7475 22 1 3.0528 7.2146 -1.0651 23 6 1.0626 7.0997 -0.3018 24 7 0.0874 6.3065 0.0844 25 14 0.8366 8.9531 -0.2465 26 1 0.9920 9.5117 -1.6136 27 1 -0.5198 9.2712 0.2675 28 1 1.8581 9.5498 0.6511 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.7321 -0.4388 1.2942 33 1 3.7968 1.1281 2.1362 34 1 5.8583 1.5084 3.0891 35 1 8.3404 1.4514 2.9679 36 1 7.9880 -0.4620 -0.8350 37 1 3.3831 3.2382 0.5913 38 1 5.4963 1.8102 -2.0446 39 1 5.3899 3.2916 -3.0260 40 1 6.1672 3.3383 -1.4257 41 1 4.5817 5.1782 -0.6635 42 1 3.9455 5.1502 -2.3257 43 1 1.6842 4.6299 -1.4513 44 1 2.3204 4.6579 0.2108 45 1 -0.7493 6.6838 0.3984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:35 Heat of formation + Delta-G solvation = -90.078859 kcal Electronic energy + Delta-G solvation = -27831.457441 eV Core-core repulsion = 23873.632045 eV Total energy + Delta-G solvation = -3957.825396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.84027 -41.07701 -38.83094 -37.58580 -37.28636 -35.76881 -34.62318 -33.33553 -32.33878 -31.02557 -29.40227 -28.39410 -27.02302 -25.62859 -24.57989 -23.33326 -22.86080 -21.45650 -21.18409 -18.97949 -18.45098 -18.14575 -17.78488 -17.52963 -17.37716 -16.64398 -16.53234 -16.43809 -15.72394 -15.38076 -14.90519 -14.64957 -14.52028 -14.38991 -14.30610 -14.15760 -13.88129 -13.57303 -13.33614 -13.16599 -13.11158 -12.89703 -12.82750 -12.76521 -12.48155 -12.45901 -12.32962 -12.09428 -11.90524 -11.79598 -11.72941 -11.53558 -11.24872 -10.93635 -10.71976 -10.51950 -10.43815 -9.69953 -9.63479 -8.15055 -6.27965 0.01322 0.29646 1.10685 1.16162 1.37332 1.40985 1.48652 1.74226 2.41049 2.74696 2.99431 3.15910 3.36654 3.56784 3.85919 3.92709 3.97172 4.01938 4.12480 4.17932 4.29155 4.32000 4.33804 4.38866 4.43391 4.66151 4.68588 4.76423 4.79085 4.87159 4.95190 5.01493 5.03467 5.07214 5.16337 5.24812 5.36405 5.41503 5.54501 5.61909 5.73316 5.91629 5.98935 6.22338 6.28601 6.73579 6.91370 6.97001 7.40520 8.94768 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010565 B = 0.003212 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.538179 B = 8713.963517 C =10472.892145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.419 3.581 4 O -0.521 6.521 5 C 0.112 3.888 6 H 0.128 0.872 7 C -0.049 4.049 8 C 0.153 3.847 9 C -0.150 4.150 10 C -0.064 4.064 11 C -0.102 4.102 12 Cl -0.058 7.058 13 C 0.112 3.888 14 N -0.479 5.479 15 N -0.647 5.647 16 C 0.091 3.909 17 H 0.019 0.981 18 C -0.122 4.122 19 C -0.102 4.102 20 C 0.045 3.955 21 C -0.548 4.548 22 H 0.057 0.943 23 C 0.000 4.000 24 N -0.927 5.927 25 Si 0.962 3.038 26 H -0.268 1.268 27 H -0.284 1.284 28 H -0.265 1.265 29 H 0.139 0.861 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.176 0.824 37 H 0.348 0.652 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.054 0.946 43 H -0.028 1.028 44 H 0.001 0.999 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.778 -18.600 3.871 24.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.260 3.740 4 O -0.408 6.408 5 C -0.001 4.001 6 H 0.145 0.855 7 C -0.087 4.087 8 C 0.015 3.985 9 C -0.169 4.169 10 C -0.091 4.091 11 C -0.131 4.131 12 Cl -0.030 7.030 13 C -0.046 4.046 14 N -0.188 5.188 15 N -0.281 5.281 16 C -0.019 4.019 17 H 0.037 0.963 18 C -0.180 4.180 19 C -0.140 4.140 20 C 0.007 3.993 21 C -0.586 4.586 22 H 0.076 0.924 23 C -0.198 4.198 24 N -0.566 5.566 25 Si 0.787 3.213 26 H -0.193 1.193 27 H -0.210 1.210 28 H -0.190 1.190 29 H 0.157 0.843 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.133 0.867 33 H 0.113 0.887 34 H 0.177 0.823 35 H 0.179 0.821 36 H 0.193 0.807 37 H 0.170 0.830 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.072 0.928 43 H -0.010 1.010 44 H 0.019 0.981 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.678 -18.782 3.267 24.060 hybrid contribution -1.276 1.664 0.397 2.135 sum 13.402 -17.118 3.664 22.047 Atomic orbital electron populations 1.23461 0.75740 1.05475 1.01753 1.86504 1.24197 1.32774 1.83797 1.25816 0.94463 0.81637 0.72126 1.90937 1.67535 1.37272 1.45053 1.21604 0.83063 0.92438 1.02997 0.85487 1.20493 0.89490 1.02331 0.96416 1.20931 0.95870 0.92143 0.89506 1.22167 0.93643 1.00147 1.00988 1.21754 0.95055 0.95382 0.96877 1.22137 0.86198 1.05860 0.98909 1.98378 1.09412 1.97237 1.97937 1.22945 0.88308 0.95587 0.97769 1.67516 1.10664 1.16282 1.24369 1.61143 1.54672 1.00993 1.11241 1.21513 0.97057 0.94581 0.88701 0.96274 1.21674 0.95181 1.01565 0.99546 1.21649 0.97935 0.93945 1.00459 1.18798 0.91607 0.94360 0.94505 1.21719 0.99818 0.93766 1.43262 0.92430 1.25982 0.95746 1.03074 0.94969 1.70173 1.05183 1.36732 1.44546 0.85554 0.77290 0.79649 0.78844 1.19348 1.20958 1.18979 0.84252 0.92693 0.93481 0.86705 0.88650 0.82343 0.82111 0.80708 0.82982 0.91861 0.92090 0.92512 0.92344 0.92771 1.00976 0.98122 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.56 113.37 1.20 1.90 16 2 O -0.36 -9.84 10.37 -51.50 -0.53 -10.38 16 3 C 0.42 13.86 6.96 71.24 0.50 14.36 16 4 O -0.52 -23.02 14.66 21.96 0.32 -22.70 16 5 C 0.11 3.10 2.24 44.17 0.10 3.19 16 6 H 0.13 3.40 6.77 -2.38 -0.02 3.38 16 7 C -0.05 -1.02 5.26 29.84 0.16 -0.86 16 8 C 0.15 3.12 5.91 42.55 0.25 3.37 16 9 C -0.15 -2.62 9.71 22.36 0.22 -2.40 16 10 C -0.06 -1.04 9.98 22.49 0.22 -0.82 16 11 C -0.10 -1.77 6.34 22.41 0.14 -1.63 16 12 Cl -0.06 -0.92 28.99 -2.72 -0.08 -1.00 16 13 C 0.11 2.05 10.99 84.70 0.93 2.98 16 14 N -0.48 -10.13 9.78 -183.80 -1.80 -11.93 16 15 N -0.65 -21.21 5.62 -473.32 -2.66 -23.87 16 16 C 0.09 3.25 2.29 44.92 0.10 3.35 16 17 H 0.02 0.76 7.64 -2.39 -0.02 0.74 16 18 C -0.12 -3.46 9.40 71.98 0.68 -2.78 16 19 C -0.10 -4.41 4.74 30.60 0.15 -4.27 16 20 C 0.04 2.47 4.44 29.85 0.13 2.60 16 21 C -0.55 -32.62 9.11 25.60 0.23 -32.38 16 22 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 23 C 0.00 0.02 5.46 84.66 0.46 0.48 16 24 N -0.93 -59.14 13.29 21.45 0.28 -58.85 16 25 Si 0.96 45.92 29.54 68.60 2.03 47.95 16 26 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 27 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 28 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 29 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.05 1.40 8.13 -2.39 -0.02 1.38 16 31 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 32 H 0.11 2.02 7.99 -2.39 -0.02 2.00 16 33 H 0.09 1.86 7.87 -2.39 -0.02 1.84 16 34 H 0.16 2.19 7.95 -2.91 -0.02 2.17 16 35 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 37 H 0.35 13.73 5.49 -89.69 -0.49 13.24 16 38 H 0.06 1.63 7.42 -2.39 -0.02 1.62 16 39 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 43 H -0.03 -1.78 8.14 -2.39 -0.02 -1.80 16 44 H 0.00 0.03 6.05 -2.39 -0.01 0.02 16 45 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 Total: -1.00 -74.44 391.43 3.53 -70.90 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.51 Total: 22.79 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 5.47 Total: -12.92 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -4.17 Total: -94.65 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -0.21 Total: -33.07 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -74.44 3.53 -70.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.175 kcal (2) G-P(sol) polarization free energy of solvation -74.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds