Wall clock time and date at job start Wed Apr 1 2020 00:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00028 * 2 1 4 4 C 1.38753 * 120.05659 * 0.20076 * 3 2 1 5 5 C 1.38125 * 119.94256 * 180.23299 * 4 3 2 6 6 C 1.38281 * 120.05649 * 359.82254 * 5 4 3 7 7 C 1.38241 * 120.11286 * 359.97010 * 6 5 4 8 8 C 1.50704 * 119.97509 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.47439 * 199.98110 * 8 7 6 10 10 C 1.52995 * 109.46849 * 79.97845 * 8 7 6 11 11 N 1.46499 * 109.47114 * 319.98122 * 8 7 6 12 12 C 1.34774 * 120.00241 * 205.00081 * 11 8 7 13 13 O 1.21572 * 119.99706 * 359.97438 * 12 11 8 14 14 N 1.34776 * 120.00045 * 179.97438 * 12 11 8 15 15 C 1.38728 * 119.99610 * 175.56298 * 14 12 11 16 16 C 1.38837 * 120.00202 * 59.01412 * 15 14 12 17 17 H 1.08005 * 120.00049 * 204.34475 * 16 15 14 18 18 C 1.40924 * 120.00287 * 24.34320 * 16 15 14 19 19 N 1.30298 * 119.99492 * 6.58560 * 18 16 15 20 20 Si 1.86797 * 120.00359 * 186.58238 * 18 16 15 21 21 H 1.48498 * 109.46881 * 90.00225 * 20 18 16 22 22 H 1.48498 * 109.47350 * 210.00117 * 20 18 16 23 23 H 1.48501 * 109.47010 * 330.00269 * 20 18 16 24 24 C 1.41077 * 119.99801 * 239.00954 * 15 14 12 25 25 C 1.43197 * 119.99684 * 185.31062 * 24 15 14 26 26 N 9.73276 * 140.24299 * 35.70200 * 6 1 2 27 27 C 1.43195 * 119.99804 * 5.31271 * 24 15 14 28 28 N 9.48983 * 166.58614 * 154.15191 * 3 1 2 29 29 C 1.38170 * 120.05723 * 359.97438 * 7 6 5 30 30 H 1.08997 * 109.47298 * 59.99854 * 1 2 3 31 31 H 1.09003 * 109.47224 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47352 * 300.00355 * 1 2 3 33 33 H 1.07999 * 120.02915 * 0.03256 * 4 3 2 34 34 H 1.08003 * 119.97005 * 179.79481 * 5 4 3 35 35 H 1.08006 * 119.94799 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47498 * 299.99821 * 10 8 7 37 37 H 1.08999 * 109.47256 * 60.00244 * 10 8 7 38 38 H 1.09006 * 109.46943 * 180.02562 * 10 8 7 39 39 H 0.97002 * 119.99942 * 24.99376 * 11 8 7 40 40 H 0.96992 * 120.00230 * 355.56268 * 14 12 11 41 41 H 0.96999 * 119.99804 * 184.98905 * 19 18 16 42 42 H 1.07994 * 120.03191 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0042 5 6 1.9209 3.6047 -0.0007 6 6 3.3019 3.6757 -0.0060 7 6 4.0559 2.5171 -0.0059 8 6 5.5608 2.5980 -0.0112 9 1 5.9744 1.6524 -0.3615 10 6 6.0613 2.8794 1.4070 11 7 5.9886 3.6785 -0.9033 12 6 7.2122 3.6424 -1.4669 13 8 7.9612 2.7134 -1.2347 14 7 7.6055 4.6361 -2.2881 15 6 8.8968 4.6468 -2.7950 16 6 9.3519 3.5798 -3.5580 17 1 10.4105 3.3761 -3.6244 18 6 8.4326 2.7626 -4.2459 19 7 7.1696 3.0818 -4.2717 20 14 9.0248 1.2220 -5.1206 21 1 8.9698 0.0698 -4.1854 22 1 8.1524 0.9513 -6.2914 23 1 10.4229 1.4202 -5.5803 24 6 9.7475 5.7418 -2.5354 25 6 11.0387 5.8070 -3.1510 26 7 12.0622 5.8581 -3.6420 27 6 9.3198 6.7880 -1.6562 28 7 8.9809 7.6172 -0.9598 29 6 3.4311 1.2847 0.0001 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.2128 2.3204 0.0080 34 1 1.3340 4.5114 -0.0007 35 1 3.7923 4.6380 -0.0103 36 1 5.6478 3.8251 1.7573 37 1 5.7430 2.0755 2.0708 38 1 7.1497 2.9384 1.4031 39 1 5.3910 4.4198 -1.0884 40 1 6.9858 5.3438 -2.5245 41 1 6.5264 2.4831 -4.6824 42 1 4.0206 0.3798 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192900165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:23 Heat of formation + Delta-G solvation = 17.576461 kcal Electronic energy + Delta-G solvation = -28359.236147 eV Core-core repulsion = 24304.971543 eV Total energy + Delta-G solvation = -4054.264604 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.48618 -39.60866 -38.06830 -36.51109 -35.19180 -34.66833 -34.45241 -33.24981 -31.73669 -30.72981 -29.76784 -28.84981 -27.53062 -27.00730 -23.97571 -22.83103 -22.17984 -20.82514 -20.14235 -18.92565 -18.23495 -17.75552 -17.16953 -16.51577 -16.17008 -16.06278 -15.98965 -15.58983 -14.80583 -14.55330 -14.27353 -13.87577 -13.71444 -13.54379 -13.23810 -13.13292 -12.74988 -12.55757 -12.51721 -12.34141 -12.19706 -12.13398 -11.68382 -11.63394 -11.55248 -11.53047 -11.42317 -11.37462 -11.23050 -10.94018 -10.86186 -10.74686 -10.51106 -9.97334 -9.44971 -9.05109 -8.89895 -8.62958 -8.38504 -7.91518 -7.23299 -5.32057 1.11171 1.27896 2.21420 2.81041 2.85317 2.93813 3.01114 3.32912 3.52819 3.62142 3.93457 4.05707 4.12390 4.32889 4.39092 4.51419 4.57884 4.81086 4.83276 4.87480 4.93791 5.09951 5.15615 5.18965 5.26495 5.35093 5.47203 5.54445 5.67656 5.79064 5.84014 6.03921 6.09246 6.23898 6.32309 6.35464 6.40460 6.41426 6.57417 6.94283 7.13590 7.17449 7.22624 7.41046 7.79462 7.90233 8.23576 8.70954 9.01287 9.20583 9.30641 9.43312 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.003227 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.958672 B = 8673.699328 C =10124.145042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.127 3.873 4 C -0.212 4.212 5 C -0.077 4.077 6 C -0.148 4.148 7 C -0.043 4.043 8 C 0.205 3.795 9 H 0.097 0.903 10 C -0.158 4.158 11 N -0.744 5.744 12 C 0.728 3.272 13 O -0.577 6.577 14 N -0.666 5.666 15 C 0.394 3.606 16 C -0.349 4.349 17 H 0.109 0.891 18 C 0.083 3.917 19 N -0.730 5.730 20 Si 0.927 3.073 21 H -0.256 1.256 22 H -0.270 1.270 23 H -0.250 1.250 24 C -0.314 4.314 25 C 0.327 3.673 26 N -0.536 5.536 27 C 0.313 3.687 28 N -0.540 5.540 29 C -0.140 4.140 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.391 0.609 40 H 0.394 0.606 41 H 0.299 0.701 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.622 -8.398 5.069 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.230 4.230 5 C -0.095 4.095 6 C -0.166 4.166 7 C -0.043 4.043 8 C 0.099 3.901 9 H 0.115 0.885 10 C -0.217 4.217 11 N -0.401 5.401 12 C 0.429 3.571 13 O -0.453 6.453 14 N -0.313 5.313 15 C 0.290 3.710 16 C -0.377 4.377 17 H 0.127 0.873 18 C -0.148 4.148 19 N -0.349 5.349 20 Si 0.749 3.251 21 H -0.180 1.180 22 H -0.195 1.195 23 H -0.173 1.173 24 C -0.333 4.333 25 C 0.019 3.981 26 N -0.219 5.219 27 C 0.006 3.994 28 N -0.222 5.222 29 C -0.159 4.159 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.226 0.774 40 H 0.229 0.771 41 H 0.111 0.889 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.051 -8.110 5.492 20.537 hybrid contribution -1.281 -0.175 -0.677 1.459 sum -19.332 -8.286 4.815 21.577 Atomic orbital electron populations 1.23041 0.78495 1.03865 1.01295 1.86077 1.21281 1.27002 1.88778 1.18951 0.92185 0.84127 0.96520 1.21209 0.99874 0.92459 1.09498 1.20898 0.94467 0.96973 0.97164 1.20878 0.93708 0.98155 1.03883 1.19800 0.95256 0.92515 0.96766 1.19492 0.88151 0.92168 0.90246 0.88477 1.22196 1.02706 1.01679 0.95099 1.45107 1.16553 1.26560 1.51888 1.15429 0.81231 0.82176 0.78268 1.90894 1.53541 1.34370 1.66462 1.41889 1.13358 1.27139 1.48942 1.16456 0.79293 0.89850 0.85367 1.20173 0.96679 1.05884 1.14954 0.87341 1.26465 0.94277 0.99469 0.94568 1.69398 1.03228 1.34432 1.27865 0.85920 0.80867 0.79595 0.78752 1.17992 1.19468 1.17279 1.12889 0.95178 1.01808 1.23427 1.24665 0.91071 0.91482 0.90836 1.81058 1.13278 1.11694 1.15825 1.25160 0.92126 0.91384 0.90747 1.80990 1.11135 1.13249 1.16868 1.20238 0.91312 0.98193 1.06125 0.92665 0.88309 0.92720 0.85670 0.85701 0.85736 0.92475 0.91888 0.91039 0.77430 0.77079 0.88900 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.33 10.50 -19.41 -0.20 -3.54 16 3 C 0.13 1.41 6.69 -39.22 -0.26 1.15 16 4 C -0.21 -2.02 9.04 -39.43 -0.36 -2.37 16 5 C -0.08 -0.72 10.04 -39.61 -0.40 -1.12 16 6 C -0.15 -1.56 9.05 -39.56 -0.36 -1.92 16 7 C -0.04 -0.50 4.95 -104.64 -0.52 -1.02 16 8 C 0.21 2.79 2.77 -69.08 -0.19 2.60 16 9 H 0.10 1.49 7.44 -51.93 -0.39 1.11 16 10 C -0.16 -2.02 9.46 37.16 0.35 -1.67 16 11 N -0.74 -11.17 5.03 -59.82 -0.30 -11.48 16 12 C 0.73 14.03 7.11 -86.92 -0.62 13.41 16 13 O -0.58 -13.09 14.92 5.30 0.08 -13.01 16 14 N -0.67 -12.92 3.22 -13.98 -0.05 -12.96 16 15 C 0.39 8.61 5.53 -83.44 -0.46 8.15 16 16 C -0.35 -7.76 7.55 -38.34 -0.29 -8.05 16 17 H 0.11 2.46 7.20 -52.48 -0.38 2.08 16 18 C 0.08 1.69 4.83 -17.19 -0.08 1.61 16 19 N -0.73 -14.37 11.07 55.60 0.62 -13.76 16 20 Si 0.93 16.24 29.58 -169.99 -5.03 11.21 16 21 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 22 H -0.27 -4.51 7.11 56.52 0.40 -4.11 16 23 H -0.25 -4.44 7.11 56.52 0.40 -4.04 16 24 C -0.31 -7.11 5.88 -104.97 -0.62 -7.73 16 25 C 0.33 7.76 14.00 -22.46 -0.31 7.45 16 26 N -0.54 -13.16 18.54 41.85 0.78 -12.39 16 27 C 0.31 7.11 14.82 -22.52 -0.33 6.78 16 28 N -0.54 -12.55 18.53 41.78 0.77 -11.78 16 29 C -0.14 -1.66 9.61 -39.43 -0.38 -2.03 16 30 H 0.05 0.30 7.67 -51.93 -0.40 -0.10 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.28 7.65 -51.93 -0.40 -0.12 16 33 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 34 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 35 H 0.12 1.18 6.91 -52.48 -0.36 0.82 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.39 5.02 6.89 -40.82 -0.28 4.74 16 40 H 0.39 6.85 8.84 -40.82 -0.36 6.49 16 41 H 0.30 5.42 8.29 -40.82 -0.34 5.08 16 42 H 0.13 1.50 8.04 -52.49 -0.42 1.08 16 LS Contribution 379.69 15.07 5.72 5.72 Total: -1.00 -28.51 379.69 -6.01 -34.53 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -4.56 Total: 11.04 kcal Atomic # 6 Polarization: 20.24 SS G_CDS: -3.84 Total: 16.41 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: 1.82 Total: -62.36 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.12 Total: -16.55 kcal Atomic # 14 Polarization: 16.24 SS G_CDS: -5.03 Total: 11.21 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.51 -6.01 -34.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192900165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.104 kcal (2) G-P(sol) polarization free energy of solvation -28.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds